@apollo-annotation/common 0.3.4 → 0.3.6

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@apollo-annotation/common",
-  "version": "0.3.4",
+  "version": "0.3.6",
   "repository": {
     "type": "git",
     "url": "https://github.com/GMOD/Apollo3.git",
@@ -11,13 +11,13 @@
     "build": "tsc"
   },
   "dependencies": {
-    "@apollo-annotation/schemas": "^0.3.4",
+    "@apollo-annotation/schemas": "^0.3.6",
     "@jbrowse/core": "^3.0.1",
     "bson-objectid": "^2.0.4",
     "tslib": "^2.3.1"
   },
   "devDependencies": {
-    "@apollo-annotation/mst": "^0.3.4",
+    "@apollo-annotation/mst": "^0.3.6",
     "@nestjs/common": "^10.1.0",
     "@nestjs/core": "^10.1.0",
     "@types/node": "^18.14.2",

package/src/ApolloPlugin.ts

@@ -1,5 +1,5 @@
 import Plugin from '@jbrowse/core/Plugin'
-import PluginManager from '@jbrowse/core/PluginManager'
+import type PluginManager from '@jbrowse/core/PluginManager'
 
 export type ApolloPluginConstructor = new (...args: unknown[]) => ApolloPlugin
 

package/src/AssemblySpecificChange.ts

@@ -1,5 +1,10 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
-import { Change, ChangeOptions, SerializedChange, isChange } from './Change'
+import {
+  Change,
+  type ChangeOptions,
+  type SerializedChange,
+  isChange,
+} from './Change'
 
 export interface SerializedAssemblySpecificChange extends SerializedChange {
   assembly: string

package/src/Change.ts

@@ -1,21 +1,21 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
 import {
-  AnnotationFeature,
-  AnnotationFeatureSnapshot,
-  ApolloAssemblyI,
-  BackendDriverType,
-  CheckResultI,
-  CheckResultSnapshot,
+  type AnnotationFeature,
+  type AnnotationFeatureSnapshot,
+  type ApolloAssemblyI,
+  type BackendDriverType,
+  type CheckResultI,
+  type CheckResultSnapshot,
 } from '@apollo-annotation/mst'
-import { AppRootModel, Region } from '@jbrowse/core/util'
+import { type AppRootModel, type Region } from '@jbrowse/core/util'
 
 import { changeRegistry } from './ChangeTypeRegistry'
 import {
-  BackendDataStore,
+  type BackendDataStore,
   Operation,
-  OperationOptions,
-  SerializedOperation,
+  type OperationOptions,
+  type SerializedOperation,
 } from './Operation'
 
 export interface ClientDataStore {

package/src/ChangeTypeRegistry.ts

@@ -1,4 +1,4 @@
-import { Change } from './Change'
+import { type Change } from './Change'
 
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 type ChangeType = new (...args: any[]) => Change

package/src/Check.ts

@@ -1,11 +1,12 @@
 import {
-  AnnotationFeatureSnapshot,
-  CheckResultSnapshot,
+  type AnnotationFeatureSnapshot,
+  type CheckResultSnapshot,
 } from '@apollo-annotation/mst'
 
 export abstract class Check {
   abstract name: string
   abstract version: number
+  abstract causes: string[]
 
   abstract checkFeature(
     feature: AnnotationFeatureSnapshot,

package/src/CheckRegistry.ts

@@ -1,4 +1,4 @@
-import { Check } from './Check'
+import { type Check } from './Check'
 
 class CheckRegistry {
   checks = new Map<string, Check>()

package/src/FeatureChange.ts

@@ -1,16 +1,16 @@
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/no-unsafe-argument */
-import type { AnnotationFeatureSnapshot } from '@apollo-annotation/mst'
-import { Feature } from '@apollo-annotation/schemas'
+import { type AnnotationFeatureSnapshot } from '@apollo-annotation/mst'
+import { type Feature } from '@apollo-annotation/schemas'
 import ObjectID from 'bson-objectid'
-import type { Types } from 'mongoose'
+import { type Types } from 'mongoose'
 
 import {
   AssemblySpecificChange,
-  SerializedAssemblySpecificChange,
+  type SerializedAssemblySpecificChange,
   isAssemblySpecificChange,
 } from './AssemblySpecificChange'
-import { ChangeOptions } from './Change'
+import { type ChangeOptions } from './Change'
 
 export interface SerializedFeatureChange
   extends SerializedAssemblySpecificChange {
@@ -109,6 +109,7 @@ export abstract class FeatureChange extends AssemblySpecificChange {
         : (feature.refSeq as unknown as Types.ObjectId).toHexString()
 
     return {
+      // eslint-disable-next-line @typescript-eslint/no-misused-spread
       ...feature,
       refSeq,
       children: feature.children && children,

package/src/Operation.ts

@@ -1,22 +1,22 @@
 /* eslint-disable @typescript-eslint/no-confusing-void-expression */
 /* eslint-disable @typescript-eslint/no-unnecessary-condition */
 /* eslint-disable @typescript-eslint/restrict-template-expressions */
-import type { ReadStream } from 'node:fs'
-import type { FileHandle } from 'node:fs/promises'
+import { type ReadStream } from 'node:fs'
+import { type FileHandle } from 'node:fs/promises'
 
 import {
-  AssemblyDocument,
-  FeatureDocument,
-  FileDocument,
-  RefSeqChunkDocument,
-  RefSeqDocument,
-  JBrowseConfigDocument,
-  UserDocument,
-  CheckDocument,
+  type AssemblyDocument,
+  type CheckDocument,
+  type FeatureDocument,
+  type FileDocument,
+  type JBrowseConfigDocument,
+  type RefSeqChunkDocument,
+  type RefSeqDocument,
+  type UserDocument,
 } from '@apollo-annotation/schemas'
-import type { LoggerService } from '@nestjs/common'
-import type { ClientSession, Model } from 'mongoose'
-import { GenericFilehandle } from 'generic-filehandle'
+import { type LoggerService } from '@nestjs/common'
+import { type GenericFilehandle } from 'generic-filehandle'
+import { type ClientSession, type Model } from 'mongoose'
 
 export interface LocalGFF3DataStore {
   typeName: 'LocalGFF3'

package/src/OperationTypeRegistry.ts

@@ -1,4 +1,4 @@
-import { Operation } from './Operation'
+import { type Operation } from './Operation'
 
 // eslint-disable-next-line @typescript-eslint/no-explicit-any
 type OperationType = new (...args: any[]) => Operation

package/src/Validation.ts

@@ -1,10 +1,10 @@
 /* eslint-disable @typescript-eslint/require-await */
-import { FeatureDocument } from '@apollo-annotation/schemas'
-import type { ExecutionContext } from '@nestjs/common'
-import type { Reflector } from '@nestjs/core'
-import { ClientSession, Model } from 'mongoose'
+import { type FeatureDocument } from '@apollo-annotation/schemas'
+import { type ExecutionContext } from '@nestjs/common'
+import { type Reflector } from '@nestjs/core'
+import { type ClientSession, type Model } from 'mongoose'
 
-import { Change, ClientDataStore } from './Change'
+import { type Change, type ClientDataStore } from './Change'
 
 export interface Context {
   context: ExecutionContext