@apollo-annotation/cli 1.0.0 → 1.1.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +37 -37
- package/dist/baseCommand.d.ts.map +1 -1
- package/dist/baseCommand.js +1 -3
- package/dist/baseCommand.js.map +1 -1
- package/dist/commands/assembly/check.d.ts.map +1 -1
- package/dist/commands/assembly/check.js +1 -2
- package/dist/commands/assembly/check.js.map +1 -1
- package/dist/commands/assembly/sequence.d.ts.map +1 -1
- package/dist/commands/assembly/sequence.js +1 -2
- package/dist/commands/assembly/sequence.js.map +1 -1
- package/dist/commands/config.d.ts.map +1 -1
- package/dist/commands/config.js +3 -9
- package/dist/commands/config.js.map +1 -1
- package/dist/commands/feature/copy.d.ts.map +1 -1
- package/dist/commands/feature/copy.js +1 -2
- package/dist/commands/feature/copy.js.map +1 -1
- package/dist/commands/feature/edit-attribute.d.ts.map +1 -1
- package/dist/commands/feature/edit-attribute.js +1 -3
- package/dist/commands/feature/edit-attribute.js.map +1 -1
- package/dist/commands/file/download.d.ts.map +1 -1
- package/dist/commands/file/download.js +1 -4
- package/dist/commands/file/download.js.map +1 -1
- package/dist/commands/login.d.ts.map +1 -1
- package/dist/commands/login.js +2 -8
- package/dist/commands/login.js.map +1 -1
- package/dist/commands/logout.d.ts.map +1 -1
- package/dist/commands/logout.js +2 -8
- package/dist/commands/logout.js.map +1 -1
- package/dist/commands/status.d.ts.map +1 -1
- package/dist/commands/status.js +2 -8
- package/dist/commands/status.js.map +1 -1
- package/dist/test/test.js +24 -24
- package/dist/test/test.js.map +1 -1
- package/dist/utils.d.ts.map +1 -1
- package/dist/utils.js +1 -3
- package/dist/utils.js.map +1 -1
- package/oclif.manifest.json +38 -38
- package/package.json +3 -3
package/dist/commands/login.js
CHANGED
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@@ -53,14 +53,8 @@ need to execute this command again unless the token has expired. To setup a new
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};
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async run() {
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const { flags } = await this.parse(Login);
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-
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-
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configFile = path.join(this.config.configDir, 'config.yml');
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}
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-
let profileName = flags.profile;
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if (profileName === undefined) {
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profileName = process.env.APOLLO_PROFILE ?? 'default';
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-
}
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+
const configFile = flags['config-file'] ?? path.join(this.config.configDir, 'config.yml');
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const profileName = flags.profile ?? process.env.APOLLO_PROFILE ?? 'default';
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basicCheckConfig(configFile, profileName);
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const config = new ApolloConf(configFile);
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const accessType = config.get(`${profileName}.accessType`);
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"login.js","sourceRoot":"","sources":["../../src/commands/login.ts"],"names":[],"mappings":"AAAA,qDAAqD;AACrD,2DAA2D;AAC3D,gEAAgE;AAChE,OAAO,YAAY,MAAM,aAAa,CAAA;AACtC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAA;AACjC,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,KAAK,WAAW,MAAM,kBAAkB,CAAA;AAE/C,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,EAAE,MAAM,aAAa,CAAA;AAC/C,OAAO,IAAI,MAAM,MAAM,CAAA;AACvB,OAAO,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAE9B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAEL,gBAAgB,EAChB,uBAAuB,EACvB,kBAAkB,EAClB,OAAO,GACR,MAAM,aAAa,CAAA;AAMpB,MAAM,CAAC,OAAO,OAAO,KAAM,SAAQ,WAAyB;IAC1D,MAAM,CAAC,OAAO,GAAG,iBAAiB,CAAA;IAClC,MAAM,CAAC,WAAW,GAChB;;4GAEwG,CAAA;IAE1G,MAAM,CAAC,QAAQ,GAAG;QAChB;YACE,WAAW,EACT,6GAA6G;YAC/G,OAAO,EAAE,qCAAqC;SAC/C;QACD;YACE,WAAW,EAAE,iCAAiC;YAC9C,OAAO,EAAE,0DAA0D;SACpE;KACF,CAAA;IAED,MAAM,CAAC,KAAK,GAAG;QACb,OAAO,EAAE,KAAK,CAAC,MAAM,CAAC;YACpB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,0BAA0B;YACvC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,yBAAyB;YACtC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,yBAAyB;YACtC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC;YACnB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,2DAA2D;SACzE,CAAC;QACF,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC;YAClB,WAAW,EACT,kFAAkF;YACpF,OAAO,EAAE,IAAI;SACd,CAAC;KACH,CAAA;IAEM,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;QAEzC,
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1
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+
{"version":3,"file":"login.js","sourceRoot":"","sources":["../../src/commands/login.ts"],"names":[],"mappings":"AAAA,qDAAqD;AACrD,2DAA2D;AAC3D,gEAAgE;AAChE,OAAO,YAAY,MAAM,aAAa,CAAA;AACtC,OAAO,KAAK,IAAI,MAAM,WAAW,CAAA;AACjC,OAAO,IAAI,MAAM,WAAW,CAAA;AAC5B,OAAO,KAAK,WAAW,MAAM,kBAAkB,CAAA;AAE/C,OAAO,EAAE,MAAM,EAAE,KAAK,EAAE,EAAE,EAAE,MAAM,aAAa,CAAA;AAC/C,OAAO,IAAI,MAAM,MAAM,CAAA;AACvB,OAAO,EAAE,KAAK,EAAE,MAAM,QAAQ,CAAA;AAE9B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAEL,gBAAgB,EAChB,uBAAuB,EACvB,kBAAkB,EAClB,OAAO,GACR,MAAM,aAAa,CAAA;AAMpB,MAAM,CAAC,OAAO,OAAO,KAAM,SAAQ,WAAyB;IAC1D,MAAM,CAAC,OAAO,GAAG,iBAAiB,CAAA;IAClC,MAAM,CAAC,WAAW,GAChB;;4GAEwG,CAAA;IAE1G,MAAM,CAAC,QAAQ,GAAG;QAChB;YACE,WAAW,EACT,6GAA6G;YAC/G,OAAO,EAAE,qCAAqC;SAC/C;QACD;YACE,WAAW,EAAE,iCAAiC;YAC9C,OAAO,EAAE,0DAA0D;SACpE;KACF,CAAA;IAED,MAAM,CAAC,KAAK,GAAG;QACb,OAAO,EAAE,KAAK,CAAC,MAAM,CAAC;YACpB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,0BAA0B;YACvC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,yBAAyB;YACtC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,QAAQ,EAAE,KAAK,CAAC,MAAM,CAAC;YACrB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,yBAAyB;YACtC,QAAQ,EAAE,KAAK;SAChB,CAAC;QACF,KAAK,EAAE,KAAK,CAAC,OAAO,CAAC;YACnB,IAAI,EAAE,GAAG;YACT,WAAW,EAAE,2DAA2D;SACzE,CAAC;QACF,IAAI,EAAE,KAAK,CAAC,OAAO,CAAC;YAClB,WAAW,EACT,kFAAkF;YACpF,OAAO,EAAE,IAAI;SACd,CAAC;KACH,CAAA;IAEM,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,KAAK,CAAC,CAAA;QAEzC,MAAM,UAAU,GACd,KAAK,CAAC,aAAa,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,CAAA;QAExE,MAAM,WAAW,GAAG,KAAK,CAAC,OAAO,IAAI,OAAO,CAAC,GAAG,CAAC,cAAc,IAAI,SAAS,CAAA;QAC5E,gBAAgB,CAAC,UAAU,EAAE,WAAW,CAAC,CAAA;QACzC,MAAM,MAAM,GAAe,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACrD,MAAM,UAAU,GAAW,MAAM,CAAC,GAAG,CAAC,GAAG,WAAW,aAAa,CAAW,CAAA;QAC5E,MAAM,OAAO,GACX,KAAK,CAAC,OAAO,IAAK,MAAM,CAAC,GAAG,CAAC,GAAG,WAAW,UAAU,CAAY,CAAA;QACnE,IAAI,OAAO,KAAK,SAAS,EAAE,CAAC;YAC1B,IAAI,CAAC,KAAK,CAAC,+BAA+B,CAAC,CAAA;QAC7C,CAAC;QAED,IAAI,eAAe,GAAoB,EAAE,WAAW,EAAE,EAAE,EAAE,CAAA;QAC1D,IAAI,CAAC;YACH,IAAI,CAAC,KAAK,CAAC,KAAK,EAAE,CAAC;gBACjB,MAAM,IAAI,CAAC,wBAAwB,CAAC,MAAM,EAAE,WAAW,CAAC,CAAA;YAC1D,CAAC;YACD,IAAI,UAAU,KAAK,MAAM,IAAI,KAAK,CAAC,QAAQ,KAAK,SAAS,EAAE,CAAC;gBAC1D,MAAM,QAAQ,GACZ,KAAK,CAAC,QAAQ;oBACb,MAAM,CAAC,GAAG,CAAC,GAAG,WAAW,eAAe,CAAY,CAAA;gBACvD,IAAI,QAAQ,KAAK,SAAS,EAAE,CAAC;oBAC3B,IAAI,CAAC,KAAK,CAAC,mCAAmC,CAAC,CAAA;gBACjD,CAAC;gBACD,eAAe,GAAG,MAAM,IAAI,CAAC,cAAc,CAAC,OAAO,EAAE,QAAQ,CAAC,CAAA;YAChE,CAAC;iBAAM,IAAI,UAAU,KAAK,OAAO,EAAE,CAAC;gBAClC,eAAe,GAAG,MAAM,IAAI,CAAC,eAAe,CAAC,OAAO,CAAC,CAAA;YACvD,CAAC;iBAAM,IAAI,UAAU,KAAK,SAAS,EAAE,CAAC;gBACpC,IAAI,CAAC,KAAK,CAAC,uBAAuB,CAAC,CAAA;YACrC,CAAC;iBAAM,CAAC;gBACN,eAAe,GAAG,MAAM,IAAI,CAAC,0BAA0B,CACrD,OAAO,EACP,UAAU,EACV,KAAK,CAAC,IAAI,CACX,CAAA;YACH,CAAC;QACH,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,IACE,CAAC,KAAK,YAAY,MAAM,CAAC,QAAQ,IAAI,KAAK,CAAC,OAAO,KAAK,QAAQ,CAAC;gBAChE,KAAK,YAAY,MAAM,CAAC,SAAS,EACjC,CAAC;gBACD,OAAM;YACR,CAAC;YACD,IAAI,KAAK,YAAY,KAAK,EAAE,CAAC;gBAC3B,MAAM,KAAK,CAAA;YACb,CAAC;QACH,CAAC;QACD,MAAM,CAAC,GAAG,CAAC,GAAG,WAAW,cAAc,EAAE,eAAe,CAAC,WAAW,CAAC,CAAA;IACvE,CAAC;IAEO,KAAK,CAAC,wBAAwB,CACpC,eAA2B,EAC3B,WAAmB;QAEnB,MAAM,WAAW,GAAW,eAAe,CAAC,GAAG,CAC7C,GAAG,WAAW,IAAI,IAAI,CAAC,WAAW,EAAE,CAC3B,CAAA;QACX,IAAI,CAAC,WAAW,EAAE,CAAC;YACjB,OAAM;QACR,CAAC;QACD,MAAM,cAAc,GAAG,MAAM,EAAE,CAAC,OAAO,CACrC,8DAA8D,CAC/D,CAAA;QACD,IAAI,CAAC,cAAc,EAAE,CAAC;YACpB,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC,CAAA;QACd,CAAC;IACH,CAAC;IAEO,KAAK,CAAC,cAAc,CAC1B,OAAe,EACf,QAAgB;QAEhB,MAAM,GAAG,GAAG,kBAAkB,CAAC,GAAG,OAAO,YAAY,CAAC,CAAA;QACtD,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAChC,OAAO,EAAE,EAAE,cAAc,EAAE,kBAAkB,EAAE;YAC/C,MAAM,EAAE,MAAM;YACd,IAAI,EAAE,IAAI,CAAC,SAAS,CAAC,EAAE,QAAQ,EAAE,CAAC;SACnC,CAAC,CAAA;QACF,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,YAAY,GAAG,MAAM,uBAAuB,CAChD,QAAQ,EACR,uBAAuB,CACxB,CAAA;YACD,MAAM,IAAI,KAAK,CAAC,YAAY,CAAC,CAAA;QAC/B,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAA;QACjC,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,GAAG,KAAK,IAAI,IAAI,OAAO,IAAI,GAAG,EAAE,CAAC;YAC9D,OAAO,EAAE,WAAW,EAAE,GAAG,CAAC,KAAe,EAAE,CAAA;QAC7C,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;IAChE,CAAC;IAEO,KAAK,CAAC,eAAe,CAAC,OAAe;QAC3C,MAAM,GAAG,GAAG,kBAAkB,CAAC,GAAG,OAAO,wBAAwB,CAAC,CAAA;QAClE,MAAM,QAAQ,GAAG,MAAM,KAAK,CAAC,GAAG,EAAE;YAChC,OAAO,EAAE,EAAE,cAAc,EAAE,kBAAkB,EAAE;SAChD,CAAC,CAAA;QACF,IAAI,CAAC,QAAQ,CAAC,EAAE,EAAE,CAAC;YACjB,MAAM,YAAY,GAAG,MAAM,uBAAuB,CAChD,QAAQ,EACR,wBAAwB,CACzB,CAAA;YACD,MAAM,IAAI,KAAK,CAAC,YAAY,CAAC,CAAA;QAC/B,CAAC;QACD,MAAM,GAAG,GAAG,MAAM,QAAQ,CAAC,IAAI,EAAE,CAAA;QACjC,IAAI,OAAO,GAAG,KAAK,QAAQ,IAAI,GAAG,KAAK,IAAI,IAAI,OAAO,IAAI,GAAG,EAAE,CAAC;YAC9D,OAAO,EAAE,WAAW,EAAE,GAAG,CAAC,KAAe,EAAE,CAAA;QAC7C,CAAC;QACD,MAAM,IAAI,KAAK,CAAC,wBAAwB,IAAI,CAAC,SAAS,CAAC,GAAG,CAAC,EAAE,CAAC,CAAA;IAChE,CAAC;IAEO,KAAK,CAAC,0BAA0B,CACtC,OAAe,EACf,UAAkB,EAClB,IAAY;QAEZ,MAAM,YAAY,GAAG,GAAG,CAAA;QACxB,uDAAuD;QACvD,MAAM,OAAO,GAAG,IAAI,YAAY,EAAE,CAAA;QAClC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{"version":3,"file":"logout.d.ts","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAG/C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAAW,CAAC,OAAO,MAAM,CAAC;IAC5D,MAAM,CAAC,OAAO,SAAqB;IACnC,MAAM,CAAC,WAAW,SAC+C;IAEjE,MAAM,CAAC,QAAQ;;;QASd;IAEY,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;
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{"version":3,"file":"logout.d.ts","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAG/C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAAW,CAAC,OAAO,MAAM,CAAC;IAC5D,MAAM,CAAC,OAAO,SAAqB;IACnC,MAAM,CAAC,WAAW,SAC+C;IAEjE,MAAM,CAAC,QAAQ;;;QASd;IAEY,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CAWlC"}
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package/dist/commands/logout.js
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async run() {
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const { flags } = await this.parse(Logout);
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profileName = process.env.APOLLO_PROFILE ?? 'default';
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}
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let configFile = flags['config-file'];
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if (configFile === undefined) {
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configFile = path.join(this.config.configDir, 'config.yml');
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}
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const profileName = flags.profile ?? process.env.APOLLO_PROFILE ?? 'default';
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const configFile = flags['config-file'] ?? path.join(this.config.configDir, 'config.yml');
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basicCheckConfig(configFile, profileName);
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const config = new ApolloConf(configFile);
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config.delete(`${profileName}.${KEYS.accessToken}`);
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|
-
{"version":3,"file":"logout.js","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAA;AAE5B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAE9C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAA0B;IAC5D,MAAM,CAAC,OAAO,GAAG,kBAAkB,CAAA;IACnC,MAAM,CAAC,WAAW,GAChB,+DAA+D,CAAA;IAEjE,MAAM,CAAC,QAAQ,GAAG;QAChB;YACE,WAAW,EAAE,yBAAyB;YACtC,OAAO,EAAE,qCAAqC;SAC/C;QACD;YACE,WAAW,EAAE,yBAAyB;YACtC,OAAO,EAAE,0DAA0D;SACpE;KACF,CAAA;IAEM,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE1C,
|
|
1
|
+
{"version":3,"file":"logout.js","sourceRoot":"","sources":["../../src/commands/logout.ts"],"names":[],"mappings":"AAAA,OAAO,IAAI,MAAM,WAAW,CAAA;AAE5B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAE9C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAA0B;IAC5D,MAAM,CAAC,OAAO,GAAG,kBAAkB,CAAA;IACnC,MAAM,CAAC,WAAW,GAChB,+DAA+D,CAAA;IAEjE,MAAM,CAAC,QAAQ,GAAG;QAChB;YACE,WAAW,EAAE,yBAAyB;YACtC,OAAO,EAAE,qCAAqC;SAC/C;QACD;YACE,WAAW,EAAE,yBAAyB;YACtC,OAAO,EAAE,0DAA0D;SACpE;KACF,CAAA;IAEM,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE1C,MAAM,WAAW,GAAG,KAAK,CAAC,OAAO,IAAI,OAAO,CAAC,GAAG,CAAC,cAAc,IAAI,SAAS,CAAA;QAE5E,MAAM,UAAU,GACd,KAAK,CAAC,aAAa,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,CAAA;QACxE,gBAAgB,CAAC,UAAU,EAAE,WAAW,CAAC,CAAA;QACzC,MAAM,MAAM,GAAe,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACrD,MAAM,CAAC,MAAM,CAAC,GAAG,WAAW,IAAI,IAAI,CAAC,WAAW,EAAE,CAAC,CAAA;IACrD,CAAC"}
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAG/C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAAW,CAAC,OAAO,MAAM,CAAC;IAC5D,MAAM,CAAC,OAAO,SAA+B;IAC7C,MAAM,CAAC,WAAW,SAGoD;IAEzD,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;
|
|
1
|
+
{"version":3,"file":"status.d.ts","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAG/C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAAW,CAAC,OAAO,MAAM,CAAC;IAC5D,MAAM,CAAC,OAAO,SAA+B;IAC7C,MAAM,CAAC,WAAW,SAGoD;IAEzD,GAAG,IAAI,OAAO,CAAC,IAAI,CAAC;CAmBlC"}
|
package/dist/commands/status.js
CHANGED
|
@@ -10,14 +10,8 @@ has an access token and "<profile>: Logged out" otherwise.\
|
|
|
10
10
|
Note that this command does not check the validity of the access token.';
|
|
11
11
|
async run() {
|
|
12
12
|
const { flags } = await this.parse(Status);
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
profileName = process.env.APOLLO_PROFILE ?? 'default';
|
|
16
|
-
}
|
|
17
|
-
let configFile = flags['config-file'];
|
|
18
|
-
if (configFile === undefined) {
|
|
19
|
-
configFile = path.join(this.config.configDir, 'config.yml');
|
|
20
|
-
}
|
|
13
|
+
const profileName = flags.profile ?? process.env.APOLLO_PROFILE ?? 'default';
|
|
14
|
+
const configFile = flags['config-file'] ?? path.join(this.config.configDir, 'config.yml');
|
|
21
15
|
basicCheckConfig(configFile, profileName);
|
|
22
16
|
const config = new ApolloConf(configFile);
|
|
23
17
|
const accessToken = config.get(`${profileName}.${KEYS.accessToken}`);
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"file":"status.js","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAAA,gEAAgE;AAChE,OAAO,IAAI,MAAM,WAAW,CAAA;AAE5B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAE9C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAA0B;IAC5D,MAAM,CAAC,OAAO,GAAG,4BAA4B,CAAA;IAC7C,MAAM,CAAC,WAAW,GAChB;;wEAEoE,CAAA;IAE/D,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE1C,
|
|
1
|
+
{"version":3,"file":"status.js","sourceRoot":"","sources":["../../src/commands/status.ts"],"names":[],"mappings":"AAAA,gEAAgE;AAChE,OAAO,IAAI,MAAM,WAAW,CAAA;AAE5B,OAAO,EAAE,UAAU,EAAE,IAAI,EAAE,MAAM,kBAAkB,CAAA;AACnD,OAAO,EAAE,WAAW,EAAE,MAAM,mBAAmB,CAAA;AAC/C,OAAO,EAAE,gBAAgB,EAAE,MAAM,aAAa,CAAA;AAE9C,MAAM,CAAC,OAAO,OAAO,MAAO,SAAQ,WAA0B;IAC5D,MAAM,CAAC,OAAO,GAAG,4BAA4B,CAAA;IAC7C,MAAM,CAAC,WAAW,GAChB;;wEAEoE,CAAA;IAE/D,KAAK,CAAC,GAAG;QACd,MAAM,EAAE,KAAK,EAAE,GAAG,MAAM,IAAI,CAAC,KAAK,CAAC,MAAM,CAAC,CAAA;QAE1C,MAAM,WAAW,GAAG,KAAK,CAAC,OAAO,IAAI,OAAO,CAAC,GAAG,CAAC,cAAc,IAAI,SAAS,CAAA;QAE5E,MAAM,UAAU,GACd,KAAK,CAAC,aAAa,CAAC,IAAI,IAAI,CAAC,IAAI,CAAC,IAAI,CAAC,MAAM,CAAC,SAAS,EAAE,YAAY,CAAC,CAAA;QACxE,gBAAgB,CAAC,UAAU,EAAE,WAAW,CAAC,CAAA;QAEzC,MAAM,MAAM,GAAe,IAAI,UAAU,CAAC,UAAU,CAAC,CAAA;QACrD,MAAM,WAAW,GAAW,MAAM,CAAC,GAAG,CACpC,GAAG,WAAW,IAAI,IAAI,CAAC,WAAW,EAAE,CAC3B,CAAA;QACX,IAAI,WAAW,KAAK,SAAS,IAAI,WAAW,CAAC,IAAI,EAAE,KAAK,EAAE,EAAE,CAAC;YAC3D,IAAI,CAAC,GAAG,CAAC,GAAG,WAAW,cAAc,CAAC,CAAA;QACxC,CAAC;aAAM,CAAC;YACN,IAAI,CAAC,GAAG,CAAC,GAAG,WAAW,aAAa,CAAC,CAAA;QACvC,CAAC;IACH,CAAC"}
|
package/dist/test/test.js
CHANGED
|
@@ -280,7 +280,7 @@ void describe('Test CLI', () => {
|
|
|
280
280
|
// Introduce problems
|
|
281
281
|
new Shell(`${apollo} feature edit-coords ${P} -i ${cds_id} --start 4 --end 24`);
|
|
282
282
|
p = new Shell(`${apollo} feature check ${P} -a checks.gff`);
|
|
283
|
-
|
|
283
|
+
const checks = JSON.parse(p.stdout);
|
|
284
284
|
assert.strictEqual(checks.length, 2);
|
|
285
285
|
assert.ok(p.stdout.includes('InternalStopCodon'));
|
|
286
286
|
assert.ok(p.stdout.includes('MissingStopCodon'));
|
|
@@ -289,8 +289,8 @@ void describe('Test CLI', () => {
|
|
|
289
289
|
assert.ok(p.returncode != 0);
|
|
290
290
|
assert.ok(p.stderr.includes('exceeds the bounds of its parent'));
|
|
291
291
|
// FIXME: Checks should be the same as before the invalid edit
|
|
292
|
-
p = new Shell(`${apollo} feature check ${P} -a checks.gff`)
|
|
293
|
-
checks = JSON.parse(p.stdout)
|
|
292
|
+
// p = new Shell(`${apollo} feature check ${P} -a checks.gff`)
|
|
293
|
+
// checks = JSON.parse(p.stdout)
|
|
294
294
|
//assert.strictEqual(checks.length, 2)
|
|
295
295
|
//assert.ok(p.stdout.includes('InternalStopCodon'))
|
|
296
296
|
//assert.ok(p.stdout.includes('MissingStopCodon'))
|
|
@@ -376,7 +376,7 @@ void describe('Test CLI', () => {
|
|
|
376
376
|
assert.strictEqual(contig.length, 1);
|
|
377
377
|
const contig_id = contig.at(0)._id;
|
|
378
378
|
// Edit type of "contig" feature
|
|
379
|
-
|
|
379
|
+
new Shell(`${apollo} feature edit-type ${P} -i ${contig_id} -t region`);
|
|
380
380
|
p = new Shell(`${apollo} feature get ${P} -r ${refseq} | jq '.[] | select(._id == "${contig_id}")'`);
|
|
381
381
|
contig = JSON.parse(p.stdout);
|
|
382
382
|
assert.deepStrictEqual(contig.type, 'region');
|
|
@@ -407,7 +407,7 @@ void describe('Test CLI', () => {
|
|
|
407
407
|
contig = JSON.parse(p.stdout);
|
|
408
408
|
assert.strictEqual(contig.min, 20 - 1);
|
|
409
409
|
assert.strictEqual(contig.max, 100);
|
|
410
|
-
|
|
410
|
+
new Shell(`${apollo} feature edit-coords ${P} -i ${contig_id} -s 1 -e 1`);
|
|
411
411
|
p = new Shell(`${apollo} feature get ${P} -r ${refseq} | jq '.[] | select(._id == "${contig_id}")'`);
|
|
412
412
|
contig = JSON.parse(p.stdout);
|
|
413
413
|
assert.strictEqual(contig.min, 0);
|
|
@@ -439,7 +439,7 @@ void describe('Test CLI', () => {
|
|
|
439
439
|
p = new Shell(`${apollo} feature get ${P} -r ${refseq} | jq '.[] | select(.type == "contig") | ._id'`);
|
|
440
440
|
const fid = p.stdout.trim();
|
|
441
441
|
// Edit existing attribute value
|
|
442
|
-
|
|
442
|
+
new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a source -v 'Eggs & Stuff'`);
|
|
443
443
|
p = new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a source`);
|
|
444
444
|
let out = JSON.parse(p.stdout);
|
|
445
445
|
assert.deepStrictEqual(out.at(0), `Eggs & Stuff`);
|
|
@@ -451,7 +451,7 @@ void describe('Test CLI', () => {
|
|
|
451
451
|
p = new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a NonExist`);
|
|
452
452
|
assert.deepStrictEqual(p.stdout.trim(), '');
|
|
453
453
|
// List of values
|
|
454
|
-
|
|
454
|
+
new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a newAttr -v A B C`);
|
|
455
455
|
p = new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a newAttr`);
|
|
456
456
|
out = JSON.parse(p.stdout);
|
|
457
457
|
assert.deepStrictEqual(out, ['A', 'B', 'C']);
|
|
@@ -462,12 +462,12 @@ void describe('Test CLI', () => {
|
|
|
462
462
|
// Delete again is ok
|
|
463
463
|
new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a newAttr -d`);
|
|
464
464
|
// Special fields
|
|
465
|
-
|
|
465
|
+
new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a 'Gene Ontology' -v GO:0051728 GO:0019090`);
|
|
466
466
|
p = new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a 'Gene Ontology'`);
|
|
467
467
|
out = JSON.parse(p.stdout);
|
|
468
468
|
assert.deepStrictEqual(out, ['GO:0051728', 'GO:0019090']);
|
|
469
469
|
// This should fail
|
|
470
|
-
|
|
470
|
+
new Shell(`${apollo} feature edit-attribute ${P} -i ${fid} -a 'Gene Ontology' -v FOOBAR`);
|
|
471
471
|
});
|
|
472
472
|
void globalThis.itName('Search features', () => {
|
|
473
473
|
new Shell(`${apollo} assembly add-from-gff ${P} test_data/tiny.fasta.gff3 -a vv1 -f`);
|
|
@@ -555,7 +555,7 @@ void describe('Test CLI', () => {
|
|
|
555
555
|
assert.strictEqual(out.length, 1);
|
|
556
556
|
assert.ok(out.at(0)?.type === 'gene');
|
|
557
557
|
// Gets feature and child feature that were added manually (not imported)
|
|
558
|
-
|
|
558
|
+
new Shell(`${apollo} feature add ${P} <<EOF
|
|
559
559
|
{
|
|
560
560
|
"assembly": "vv1",
|
|
561
561
|
"refSeq": "ctgA",
|
|
@@ -647,23 +647,23 @@ EOF`);
|
|
|
647
647
|
assert.deepStrictEqual(p.stdout.trim(), '[]');
|
|
648
648
|
// Can add a feature using flags
|
|
649
649
|
p = new Shell(`${apollo} feature add ${P} -a tiny -r ctgA -s 1 -e 10 -t remark`);
|
|
650
|
-
|
|
650
|
+
JSON.parse(p.stdout);
|
|
651
651
|
p = new Shell(`${apollo} feature get ${P} -a tiny`);
|
|
652
652
|
out = JSON.parse(p.stdout);
|
|
653
653
|
assert.strictEqual(out.length, 1);
|
|
654
654
|
const refSeqId = out[0].refSeq;
|
|
655
655
|
// Can add a feature using assembly and refSeq ids
|
|
656
|
-
|
|
656
|
+
new Shell(`${apollo} feature add ${P} -a ${assemblyId} -r ${refSeqId} -s 11 -e 20 -t remark`);
|
|
657
657
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId}`);
|
|
658
658
|
out = JSON.parse(p.stdout);
|
|
659
659
|
assert.strictEqual(out.length, 2);
|
|
660
660
|
// Can add a feature using JSON arg
|
|
661
|
-
|
|
661
|
+
new Shell(`${apollo} feature add ${P} '{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":21,"max":30,"type":"remark"}'`);
|
|
662
662
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId}`);
|
|
663
663
|
out = JSON.parse(p.stdout);
|
|
664
664
|
assert.strictEqual(out.length, 3);
|
|
665
665
|
// Can add a feature using JSON from stdin
|
|
666
|
-
|
|
666
|
+
new Shell(`${apollo} feature add ${P} <<EOF
|
|
667
667
|
{
|
|
668
668
|
"assembly": "${assemblyId}",
|
|
669
669
|
"refSeq": "${refSeqId}",
|
|
@@ -677,30 +677,30 @@ EOF`);
|
|
|
677
677
|
assert.strictEqual(out.length, 4);
|
|
678
678
|
// Can add a feature using JSON from a file
|
|
679
679
|
fs.writeFileSync('test_data/tmp.json', `{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":41,"max":50,"type":"remark"}\n`);
|
|
680
|
-
|
|
680
|
+
new Shell(`${apollo} feature add ${P} --feature-json-file test_data/tmp.json`);
|
|
681
681
|
fs.unlinkSync('test_data/tmp.json');
|
|
682
682
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId}`);
|
|
683
683
|
out = JSON.parse(p.stdout);
|
|
684
684
|
assert.strictEqual(out.length, 5);
|
|
685
685
|
// Can add multiple features using JSON
|
|
686
|
-
|
|
686
|
+
new Shell(`${apollo} feature add ${P} '[{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":51,"max":60,"type":"remark"},{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":61,"max":70,"type":"remark"}]'`);
|
|
687
687
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId}`);
|
|
688
688
|
out = JSON.parse(p.stdout);
|
|
689
689
|
assert.strictEqual(out.length, 7);
|
|
690
690
|
// Can add a feature with children from JSON
|
|
691
|
-
|
|
691
|
+
new Shell(`${apollo} feature add ${P} '{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":71,"max":80,"type":"match","children":[{"min":71,"max":75,"type":"match_part"}]}'`);
|
|
692
692
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId} -r ${refSeqId} -s 71 -e 80`);
|
|
693
693
|
out = JSON.parse(p.stdout);
|
|
694
694
|
let feature = out.at(0);
|
|
695
695
|
assert.strictEqual(Object.keys(feature?.children).length, 1);
|
|
696
696
|
// Can add a feature with attributes from JSON
|
|
697
|
-
|
|
697
|
+
new Shell(`${apollo} feature add ${P} '{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":81,"max":90,"type":"remark","attributes":{"key1":["val1"]}}'`);
|
|
698
698
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId} -r ${refSeqId} -s 81 -e 90`);
|
|
699
699
|
out = JSON.parse(p.stdout);
|
|
700
700
|
feature = out.at(0);
|
|
701
701
|
assert.strictEqual(feature?.attributes?.key1?.[0], 'val1');
|
|
702
702
|
// Can add a feature with children from JSON
|
|
703
|
-
|
|
703
|
+
new Shell(`${apollo} feature add ${P} '{"assembly":"${assemblyId}","refSeq":"${refSeqId}","min":91,"max":100,"type":"match","children":[{"min":91,"max":95,"type":"match_part","attributes":{"key2":["val2"]}}]}'`);
|
|
704
704
|
p = new Shell(`${apollo} feature get ${P} -a ${assemblyId} -r ${refSeqId} -s 91 -e 100`);
|
|
705
705
|
out = JSON.parse(p.stdout);
|
|
706
706
|
feature = out.at(0);
|
|
@@ -731,16 +731,16 @@ EOF`);
|
|
|
731
731
|
let out = JSON.parse(p.stdout);
|
|
732
732
|
assert.strictEqual(out.length, 2);
|
|
733
733
|
// Import again: Add to existing feature
|
|
734
|
-
|
|
734
|
+
new Shell(`${apollo} feature import ${P} test_data/tiny.fasta.gff3 -a vv1`);
|
|
735
735
|
p = new Shell(`${apollo} feature search ${P} -a vv1 -t contig`);
|
|
736
736
|
out = JSON.parse(p.stdout);
|
|
737
737
|
assert.strictEqual(out.length, 4);
|
|
738
738
|
// Import again: delete ${P} existing
|
|
739
|
-
|
|
739
|
+
new Shell(`${apollo} feature import ${P} -d test_data/tiny.fasta.gff3 -a vv1`);
|
|
740
740
|
p = new Shell(`${apollo} feature search ${P} -a vv1 -t contig`);
|
|
741
741
|
out = JSON.parse(p.stdout);
|
|
742
742
|
assert.strictEqual(out.length, 2);
|
|
743
|
-
|
|
743
|
+
new Shell(`${apollo} assembly delete ${P} -a vv2`);
|
|
744
744
|
p = new Shell(`${apollo} feature import ${P} test_data/tiny.fasta.gff3 -a vv2`, false);
|
|
745
745
|
assert.ok(p.returncode != 0);
|
|
746
746
|
assert.ok(p.stderr.includes('Assembly "vv2" does not exist'));
|
|
@@ -762,7 +762,7 @@ EOF`);
|
|
|
762
762
|
// RefSeq id does not need assembly
|
|
763
763
|
p = new Shell(`${apollo} refseq get ${P} -a dest2`);
|
|
764
764
|
const destRefSeq = JSON.parse(p.stdout).find((x) => x.name === 'ctgA')._id;
|
|
765
|
-
|
|
765
|
+
new Shell(`${apollo} feature copy ${P} -i ${fid} -r ${destRefSeq} -s 2`);
|
|
766
766
|
p = new Shell(`${apollo} feature search ${P} -a dest2 -t contig`);
|
|
767
767
|
out = JSON.parse(p.stdout).at(0);
|
|
768
768
|
assert.strictEqual(out.min, 1);
|
|
@@ -770,7 +770,7 @@ EOF`);
|
|
|
770
770
|
// Copy to same assembly
|
|
771
771
|
new Shell(`${apollo} feature copy ${P} -i ${fid} -r ctgA -a source -s 10`);
|
|
772
772
|
p = new Shell(`${apollo} feature search ${P} -a source -t contig`);
|
|
773
|
-
|
|
773
|
+
JSON.parse(p.stdout);
|
|
774
774
|
// Copy non-existant feature or refseq
|
|
775
775
|
p = new Shell(`${apollo} feature copy ${P} -i FOOBAR -r ctgA -a dest -s 1`, false);
|
|
776
776
|
assert.ok(p.returncode != 0);
|