@apollo-annotation/cli 0.3.0 → 0.3.1

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Files changed (3) hide show
  1. package/README.md +33 -33
  2. package/oclif.manifest.json +1 -1
  3. package/package.json +3 -3
package/README.md CHANGED
@@ -16,7 +16,7 @@ $ npm install -g @apollo-annotation/cli
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  $ apollo COMMAND
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  running command...
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  $ apollo (--version)
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- @apollo-annotation/cli/0.3.0 linux-x64 node-v18.20.5
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+ @apollo-annotation/cli/0.3.1 linux-x64 node-v18.20.5
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  $ apollo --help [COMMAND]
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  USAGE
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  $ apollo COMMAND
@@ -108,7 +108,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/assembly/add-from-fasta.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/add-from-fasta.ts)_
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+ [src/commands/assembly/add-from-fasta.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/add-from-fasta.ts)_
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  ## `apollo assembly add-from-gff INPUT-FILE`
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@@ -144,7 +144,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/assembly/add-from-gff.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/add-from-gff.ts)_
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+ [src/commands/assembly/add-from-gff.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/add-from-gff.ts)_
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  ## `apollo assembly check`
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@@ -186,7 +186,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/assembly/check.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/check.ts)_
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+ [src/commands/assembly/check.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/check.ts)_
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  ## `apollo assembly delete`
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@@ -214,7 +214,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/assembly/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/delete.ts)_
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+ [src/commands/assembly/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/delete.ts)_
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  ## `apollo assembly get`
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@@ -236,7 +236,7 @@ DESCRIPTION
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  ```
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  _See code:
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- [src/commands/assembly/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/get.ts)_
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+ [src/commands/assembly/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/get.ts)_
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  ## `apollo assembly sequence`
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@@ -271,7 +271,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/assembly/sequence.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/assembly/sequence.ts)_
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+ [src/commands/assembly/sequence.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/assembly/sequence.ts)_
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  ## `apollo change get`
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@@ -295,7 +295,7 @@ DESCRIPTION
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  ```
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  _See code:
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- [src/commands/change/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/change/get.ts)_
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+ [src/commands/change/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/change/get.ts)_
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  ## `apollo config [KEY] [VALUE]`
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@@ -347,7 +347,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/config.ts)_
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+ [src/commands/config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/config.ts)_
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  ## `apollo feature add-child`
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@@ -378,7 +378,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/add-child.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/add-child.ts)_
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+ [src/commands/feature/add-child.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/add-child.ts)_
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  ## `apollo feature check`
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@@ -411,7 +411,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/check.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/check.ts)_
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+ [src/commands/feature/check.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/check.ts)_
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  ## `apollo feature copy`
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@@ -442,7 +442,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/copy.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/copy.ts)_
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+ [src/commands/feature/copy.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/copy.ts)_
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  ## `apollo feature delete`
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@@ -466,7 +466,7 @@ DESCRIPTION
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  ```
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  _See code:
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- [src/commands/feature/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/delete.ts)_
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+ [src/commands/feature/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/delete.ts)_
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  ## `apollo feature edit`
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@@ -508,7 +508,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/edit.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/edit.ts)_
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+ [src/commands/feature/edit.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/edit.ts)_
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  ## `apollo feature edit-attribute`
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@@ -548,7 +548,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/edit-attribute.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/edit-attribute.ts)_
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+ [src/commands/feature/edit-attribute.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/edit-attribute.ts)_
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  ## `apollo feature edit-coords`
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@@ -582,7 +582,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/edit-coords.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/edit-coords.ts)_
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+ [src/commands/feature/edit-coords.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/edit-coords.ts)_
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  ## `apollo feature edit-type`
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@@ -606,7 +606,7 @@ DESCRIPTION
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  ```
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  _See code:
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- [src/commands/feature/edit-type.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/edit-type.ts)_
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+ [src/commands/feature/edit-type.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/edit-type.ts)_
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  ## `apollo feature get`
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@@ -640,7 +640,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/get.ts)_
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+ [src/commands/feature/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/get.ts)_
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  ## `apollo feature get-id`
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@@ -668,7 +668,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/get-id.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/get-id.ts)_
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+ [src/commands/feature/get-id.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/get-id.ts)_
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  ## `apollo feature import INPUT-FILE`
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@@ -699,7 +699,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/import.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/import.ts)_
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+ [src/commands/feature/import.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/import.ts)_
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  ## `apollo feature search`
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@@ -750,7 +750,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/feature/search.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/feature/search.ts)_
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+ [src/commands/feature/search.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/feature/search.ts)_
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  ## `apollo file delete`
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@@ -777,7 +777,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/file/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/file/delete.ts)_
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+ [src/commands/file/delete.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/file/delete.ts)_
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  ## `apollo file download`
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@@ -805,7 +805,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/file/download.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/file/download.ts)_
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+ [src/commands/file/download.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/file/download.ts)_
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  ## `apollo file get`
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@@ -832,7 +832,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/file/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/file/get.ts)_
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+ [src/commands/file/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/file/get.ts)_
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  ## `apollo file upload INPUT-FILE`
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@@ -869,7 +869,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/file/upload.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/file/upload.ts)_
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+ [src/commands/file/upload.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/file/upload.ts)_
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  ## `apollo help [COMMANDS]`
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@@ -916,7 +916,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/jbrowse/get-config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/jbrowse/get-config.ts)_
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+ [src/commands/jbrowse/get-config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/jbrowse/get-config.ts)_
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  ## `apollo jbrowse set-config INPUTFILE`
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@@ -945,7 +945,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/jbrowse/set-config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/jbrowse/set-config.ts)_
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+ [src/commands/jbrowse/set-config.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/jbrowse/set-config.ts)_
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  ## `apollo login`
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@@ -984,7 +984,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/login.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/login.ts)_
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+ [src/commands/login.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/login.ts)_
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  ## `apollo logout`
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@@ -1014,7 +1014,7 @@ EXAMPLES
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  ```
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- [src/commands/logout.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/logout.ts)_
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+ [src/commands/logout.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/logout.ts)_
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  ## `apollo refseq add-alias INPUT-FILE`
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@@ -1045,7 +1045,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/refseq/add-alias.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/refseq/add-alias.ts)_
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+ [src/commands/refseq/add-alias.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/refseq/add-alias.ts)_
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  ## `apollo refseq get`
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@@ -1077,7 +1077,7 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/refseq/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/refseq/get.ts)_
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+ [src/commands/refseq/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/refseq/get.ts)_
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  ## `apollo status`
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@@ -1099,7 +1099,7 @@ DESCRIPTION
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  ```
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  _See code:
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- [src/commands/status.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/status.ts)_
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+ [src/commands/status.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/status.ts)_
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  ## `apollo user get`
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@@ -1135,6 +1135,6 @@ EXAMPLES
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  ```
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  _See code:
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- [src/commands/user/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.0/packages/apollo-cli/src/commands/user/get.ts)_
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+ [src/commands/user/get.ts](https://github.com/GMOD/Apollo3/blob/v0.3.1/packages/apollo-cli/src/commands/user/get.ts)_
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  <!-- commandsstop -->
package/oclif.manifest.json CHANGED
@@ -2048,5 +2048,5 @@
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  ]
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  }
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  },
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- "version": "0.3.0"
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+ "version": "0.3.1"
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  }
package/package.json CHANGED
@@ -1,6 +1,6 @@
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  {
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  "name": "@apollo-annotation/cli",
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- "version": "0.3.0",
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+ "version": "0.3.1",
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  "description": "Command line interface for the Apollo annotation server",
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  "repository": {
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  "type": "git",
@@ -84,8 +84,8 @@
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  "yaml": "^2.3.4"
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  },
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  "devDependencies": {
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- "@apollo-annotation/mst": "^0.3.0",
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- "@apollo-annotation/shared": "^0.3.0",
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+ "@apollo-annotation/mst": "^0.3.1",
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+ "@apollo-annotation/shared": "^0.3.1",
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  "@istanbuljs/esm-loader-hook": "^0.2.0",
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  "@istanbuljs/nyc-config-typescript": "^1.0.2",
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  "@oclif/test": "^3.1.3",