@apollo-annotation/cli 0.1.17 → 0.1.18

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Files changed (36) hide show
  1. package/README.md +28 -28
  2. package/dist/ApolloConf.d.ts +22 -0
  3. package/dist/ApolloConf.js +143 -0
  4. package/dist/baseCommand.js +3 -14
  5. package/dist/commands/assembly/add-fasta.js +16 -26
  6. package/dist/commands/assembly/add-gff.js +11 -23
  7. package/dist/commands/assembly/check.js +7 -18
  8. package/dist/commands/assembly/delete.js +1 -1
  9. package/dist/commands/assembly/sequence.js +3 -11
  10. package/dist/commands/config.js +20 -52
  11. package/dist/commands/feature/add-child.js +10 -16
  12. package/dist/commands/feature/copy.js +13 -22
  13. package/dist/commands/feature/delete.js +7 -16
  14. package/dist/commands/feature/edit-attribute.js +3 -4
  15. package/dist/commands/feature/edit-coords.js +8 -11
  16. package/dist/commands/feature/edit-type.js +4 -3
  17. package/dist/commands/feature/edit.js +3 -15
  18. package/dist/commands/feature/get.js +6 -17
  19. package/dist/commands/feature/import.js +6 -12
  20. package/dist/commands/login.js +16 -28
  21. package/dist/commands/logout.js +4 -13
  22. package/dist/commands/status.js +4 -12
  23. package/dist/utils.d.ts +2 -2
  24. package/dist/utils.js +8 -14
  25. package/oclif.manifest.json +57 -57
  26. package/package.json +2 -1
  27. package/dist/Config.d.ts +0 -43
  28. package/dist/Config.js +0 -233
  29. package/dist/commands/config.test.d.ts +0 -1
  30. package/dist/commands/config.test.js +0 -188
  31. package/dist/commands/login.test.d.ts +0 -1
  32. package/dist/commands/login.test.js +0 -52
  33. package/dist/commands/logout.test.d.ts +0 -1
  34. package/dist/commands/logout.test.js +0 -67
  35. package/dist/commands/status.test.d.ts +0 -1
  36. package/dist/commands/status.test.js +0 -54
package/dist/commands/login.test.js DELETED
@@ -1,52 +0,0 @@
1
- /* eslint-disable @typescript-eslint/no-unsafe-assignment */
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- /* eslint-disable @typescript-eslint/no-unsafe-member-access */
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- import fs from 'node:fs';
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- import { dirname } from 'node:path';
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- import { fileURLToPath } from 'node:url';
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- import { expect, test } from '@oclif/test';
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- import YAML from 'yaml';
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- import { CONFIG_FILE, TEST_DATA_DIR, VERBOSE, copyFile, } from '../test/fixtures.js';
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- const __dirname = fileURLToPath(new URL('.', import.meta.url));
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- describe('apollo login: Config file does not exist', () => {
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- const cmd = ['login', '--config-file', '_tmp.yaml'];
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- test
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- .stderr()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
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- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .it(cmd.join(' '));
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- });
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- describe('apollo login: Profile does not exist', () => {
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- const cmd = [
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- 'login',
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- '--config-file',
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- 'test_data/complete_config.yaml',
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- '--profile',
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- 'notavailable',
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- ];
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- test
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- .stderr()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
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- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .do((output) => expect(output.stderr).to.contain('Profile'))
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- .do((output) => expect(output.stderr).to.contain('notavailable'))
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- .it(cmd.join(' '));
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- });
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- // TODO: Mock server
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- describe.skip('apollo login: Add token for guest', () => {
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- before(() => {
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- copyFile(`${TEST_DATA_DIR}/guest.yaml`, CONFIG_FILE, VERBOSE);
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- });
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- after(() => {
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- fs.rmSync(CONFIG_FILE);
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- });
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- const cmd = ['login'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), () => {
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- const cfg = YAML.parse(fs.readFileSync(CONFIG_FILE, 'utf8'));
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- expect(cfg.default.accessToken).not.empty;
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- });
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- });
package/dist/commands/logout.test.d.ts DELETED
@@ -1 +0,0 @@
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- export {};
package/dist/commands/logout.test.js DELETED
@@ -1,67 +0,0 @@
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- /* eslint-disable @typescript-eslint/no-unsafe-assignment */
2
- /* eslint-disable @typescript-eslint/no-unsafe-member-access */
3
- import fs from 'node:fs';
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- import { dirname } from 'node:path';
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- import { fileURLToPath } from 'node:url';
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- import { expect, test } from '@oclif/test';
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- import YAML from 'yaml';
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- import { CONFIG_FILE, TEST_DATA_DIR, VERBOSE, copyFile, } from '../test/fixtures.js';
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- const __dirname = fileURLToPath(new URL('.', import.meta.url));
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- describe('apollo logout: Set token to empty string', () => {
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- before(() => {
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- copyFile(`${TEST_DATA_DIR}/complete_config.yaml`, CONFIG_FILE, VERBOSE);
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- });
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- after(() => {
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- fs.rmSync(CONFIG_FILE);
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- });
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- let cmd = ['logout', '--profile', 'default'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), () => {
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- const cfg = YAML.parse(fs.readFileSync(CONFIG_FILE, 'utf8'));
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- expect(cfg.default.accessToken).to.equal('');
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- });
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- cmd = ['logout', '--profile', 'profile1'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), () => {
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- const cfg = YAML.parse(fs.readFileSync(CONFIG_FILE, 'utf8'));
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- expect(cfg.profile1.accessToken).to.equal('');
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- });
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- cmd = ['logout', '--profile', 'noAccessToken'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), () => {
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- const cfg = YAML.parse(fs.readFileSync(CONFIG_FILE, 'utf8'));
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- expect(cfg.profile1.accessToken).to.equal('');
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- });
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- });
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- describe('apollo logout: Config file does not exist', () => {
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- const cmd = ['logout', '--config-file', '_tmp.yaml'];
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- test
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- .stderr()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
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- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .it(cmd.join(' '));
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- });
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- describe('apollo logout: Profile does not exist', () => {
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- const cmd = [
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- 'logout',
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- '--config-file',
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- 'test_data/complete_config.yaml',
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- '--profile',
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- 'notavailable',
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- ];
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- test
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- .stderr()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
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- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .do((output) => expect(output.stderr).to.contain('Profile'))
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- .do((output) => expect(output.stderr).to.contain('notavailable'))
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- .it(cmd.join(' '));
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- });
package/dist/commands/status.test.d.ts DELETED
@@ -1 +0,0 @@
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- export {};
package/dist/commands/status.test.js DELETED
@@ -1,54 +0,0 @@
1
- import fs from 'node:fs';
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- import { dirname } from 'node:path';
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- import { fileURLToPath } from 'node:url';
4
- import { expect, test } from '@oclif/test';
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- import { CONFIG_FILE, TEST_DATA_DIR, VERBOSE, copyFile, } from '../test/fixtures.js';
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- const __dirname = fileURLToPath(new URL('.', import.meta.url));
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- describe('apollo status: Check logged in', () => {
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- before(() => {
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- copyFile(`${TEST_DATA_DIR}/complete_config.yaml`, CONFIG_FILE, VERBOSE);
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- });
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- after(() => {
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- fs.rmSync(CONFIG_FILE);
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- });
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- let cmd = ['status', '--profile', 'default'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), (ctx) => {
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- expect(ctx.stdout).contain('Logged in');
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- });
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- cmd = ['status', '--profile', 'noAccessToken'];
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- test
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- .stdout()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .it(cmd.join(' '), (ctx) => {
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- expect(ctx.stdout).contain('Logged out');
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- });
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- });
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- describe('apollo status: Config file does not exist', () => {
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- const cmd = ['status', '--config-file', '_tmp.yaml'];
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- test
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- .stderr()
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- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
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- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .it(cmd.join(' '));
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- });
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- describe('apollo status: Profile does not exist', () => {
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- const cmd = [
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- 'status',
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- '--config-file',
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- 'test_data/complete_config.yaml',
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- '--profile',
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- 'notavailable',
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- ];
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- test
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- .stderr()
48
- .command(cmd, { root: dirname(dirname(__dirname)) })
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- .exit(1)
50
- .do((output) => expect(output.stderr).to.contain('apollo config'))
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- .do((output) => expect(output.stderr).to.contain('Profile'))
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- .do((output) => expect(output.stderr).to.contain('notavailable'))
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- .it(cmd.join(' '));
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- });