@aperant/framework 0.8.6 → 0.9.0

package/dist/cli/commands/toolchain-detect.mjs

@@ -268,6 +268,31 @@ export function cmdToolchainDetect(projectDir, extraArgs = []) {
         }
     }
     const scripts = packageJson?.scripts ?? {};
+    // FRAMEWORK-BUG-006 (Part B) — turbo cache-bypass detection.
+    // A turbo-backed verify command can replay a STALE CACHE HIT and report
+    // PASS while a broken import sits on disk (sighted on PR #244). When the
+    // project is turbo-backed we additionally emit a `no_cache_command`
+    // variant that appends turbo's `--force` flag so pr-review (and any
+    // consumer) can run a cache-bypassing verification. This is ADDITIVE —
+    // the existing `command` strings are never altered (ID-03).
+    const hasTurboConfig = existsSync(join(scopePath, 'turbo.json'));
+    // A package script "resolves through turbo" when its script body invokes
+    // the turbo CLI (e.g. "turbo run typecheck"). package.json scripts are
+    // hand-authored and tiny; a substring match on the `turbo` token is
+    // sufficient and avoids parsing shell.
+    function scriptIsTurboBacked(scriptName) {
+        const body = scripts[scriptName];
+        return typeof body === 'string' && /\bturbo\b/.test(body);
+    }
+    // Append --force to a turbo-backed package script so it reaches the
+    // underlying `turbo run …`. Only used when the command is known to be
+    // turbo-backed, so --force is always meaningful here. npm does NOT
+    // forward trailing args to the script unless they follow a `--`
+    // separator (`npm run typecheck --force` swallows --force as an npm flag),
+    // so insert `--` for npm. pnpm/yarn/bun forward trailing args directly.
+    function withTurboForce(command) {
+        return pm === 'npm' ? `${command} -- --force` : `${command} --force`;
+    }
     // Read pyproject.toml as string if present
     let pyproject = null;
     const pyprojectPath = join(scopePath, 'pyproject.toml');
@@ -330,6 +355,20 @@ export function cmdToolchainDetect(projectDir, extraArgs = []) {
     else if (pyproject && pyproject.includes('[tool.mypy]')) {
         typecheck = { tool: 'mypy', command: 'mypy .' };
     }
+    // Additive turbo cache-bypass variant (FRAMEWORK-BUG-006). When the
+    // project is turbo-backed AND has a turbo-backed typecheck script, the
+    // plain command (often `tsc --noEmit` when tsconfig.json wins above) can
+    // be masked by a replayed turbo cache PASS. The no_cache_command routes
+    // through the turbo-backed script with `--force` so pr-review's post-fix
+    // typecheck cannot be fooled by a stale cache.
+    if (typecheck && hasTurboConfig) {
+        if (scriptIsTurboBacked('typecheck')) {
+            typecheck.no_cache_command = withTurboForce(`${pmRun} typecheck`);
+        }
+        else if (scriptIsTurboBacked('type-check')) {
+            typecheck.no_cache_command = withTurboForce(`${pmRun} type-check`);
+        }
+    }
     // --- Test ---
     let test = null;
     if (hasFilePrefix('vitest.config')) {
@@ -364,6 +403,11 @@ export function cmdToolchainDetect(projectDir, extraArgs = []) {
     if (!test && scripts.test) {
         test = { tool: 'package-script', command: `${pmRun} test` };
     }
+    // Additive turbo cache-bypass variant for tests (FRAMEWORK-BUG-006), same
+    // rationale as typecheck above — only when turbo backs the test script.
+    if (test && hasTurboConfig && scriptIsTurboBacked('test')) {
+        test.no_cache_command = withTurboForce(`${pmRun} test`);
+    }
     // --- Build ---
     let build = null;
     if (hasFile('turbo.json')) {

package/dist/cli/commands/toolchain-detect.mjs.map

@@ -1 +1 @@
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package/dist/cli/commands/triage.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"triage.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/triage.mjs"],"names":[],"mappings":"AAiIA;;GAEG;AACH,wHAoJC;AAGD,+BAA6B;AAC7B,mCAAqC;AACrC,6CAAmD"}
+{"version":3,"file":"triage.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/triage.mjs"],"names":[],"mappings":"AAmcA;;GAEG;AACH,wHAuKC;AAGD,+BAA6B;AAC7B,mCAAqC;AACrC,6CAAmD"}

package/dist/cli/commands/triage.mjs

@@ -3,8 +3,10 @@
  *
  * 5-state triage state machine with extensible metadata for v2 OSS
  * contributor primitives. Backend-configured: writes to
- * `.aperant/tasks/{task-id}/triage.json` by default (local-only); other
- * backends (github-issues, app-inbox) ship as not-implemented stubs.
+ * `.aperant/tasks/{task-id}/triage.json` by default (local-only). The
+ * `github-issues` backend mirrors triage state to a real GitHub issue via
+ * the `gh` CLI (create on first mirror, update/close on transition); the
+ * `app-inbox` backend remains a not-implemented stub (post-app-launch).
  *
  * Subcommands:
  *   apt-tools triage init <project-dir> --id <task-id> [--category bug|enhancement] [--extra '{...}']
@@ -19,6 +21,7 @@
  * routes around QUICK tasks before invoking the CLI. The CLI is the
  * mechanical state-machine surface; the routing is the skill body's job.
  */
+import { execFileSync } from 'node:child_process';
 import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'node:fs';
 import { dirname, join, resolve } from 'node:path';
 import { parseFlags } from '../util/args.mjs';
@@ -66,6 +69,31 @@ function readBackend(absProjectDir) {
         return 'local-only';
     }
 }
+/**
+ * Read task_tracking.tracker_label_vocabulary from .aperant/config.json.
+ * Absent or "default" → use the `triage:<state>` prefix; any other
+ * non-empty string → that string is used as the label prefix instead
+ * (`<vocab>:<state>`). Per spec ID-03 / AC5. This is the ONLY label
+ * configurability — no speculative label-map.
+ *
+ * @param {string} absProjectDir
+ * @returns {string} the label prefix (default 'triage')
+ */
+function readLabelVocabulary(absProjectDir) {
+    const configPath = join(absProjectDir, '.aperant', 'config.json');
+    if (!existsSync(configPath))
+        return 'triage';
+    try {
+        const parsed = JSON.parse(readFileSync(configPath, 'utf-8'));
+        const vocab = parsed?.task_tracking?.tracker_label_vocabulary;
+        if (typeof vocab === 'string' && vocab.length > 0 && vocab !== 'default')
+            return vocab;
+        return 'triage';
+    }
+    catch {
+        return 'triage';
+    }
+}
 /**
  * Triage record file path.
  *
@@ -103,24 +131,314 @@ function writeTriage(path, record) {
     writeFileSync(path, `${JSON.stringify(record, null, 2)}\n`);
 }
 /**
- * Apply the backend mirror step. local-only writes to disk; the other
- * backends return a not-implemented envelope so callers can handle the
- * stub gracefully.
+ * Map a `gh` invocation's arg array to a stable subcommand key for the
+ * test fixture (ID-07). The fixture maps these keys to {stdout, exitCode}.
+ *
+ * @param {string[]} args
+ * @returns {string}
+ */
+function ghFixtureKey(args) {
+    if (args[0] === '--version')
+        return 'version';
+    if (args[0] === 'auth' && args[1] === 'status')
+        return 'auth-status';
+    if (args[0] === 'repo' && args[1] === 'view')
+        return 'repo-view';
+    if (args[0] === 'issue' && args[1] === 'create')
+        return 'issue-create';
+    if (args[0] === 'issue' && args[1] === 'edit')
+        return 'issue-edit';
+    if (args[0] === 'issue' && args[1] === 'close')
+        return 'issue-close';
+    return args.slice(0, 2).join('-');
+}
+/**
+ * The single injection seam for `gh` shell-outs (ID-07). When
+ * process.env.APT_TRIAGE_GH_FIXTURE is set (a JSON map of subcommand key →
+ * {stdout, exitCode}), it returns the scripted response instead of
+ * shelling out — keeping unit tests hermetic (no network). Otherwise it
+ * runs `execFileSync('gh', args, ...)` with an arg array (NEVER a shell
+ * string — titles/bodies derive from task ids/reasons, ID-01).
+ *
+ * Returns a uniform `{ stdout, exitCode }`. A non-zero exit (or ENOENT) is
+ * reported via the return shape, NOT thrown — the caller maps it to an
+ * error envelope. The only thrown-then-caught path is ENOENT (gh missing),
+ * surfaced as exitCode:127 with code:'ENOENT' on the result.
+ *
+ * @param {string[]} args
+ * @param {string} cwd
+ * @returns {{ stdout: string, stderr: string, exitCode: number, code?: string }}
+ */
+function runGh(args, cwd) {
+    const fixtureRaw = process.env.APT_TRIAGE_GH_FIXTURE;
+    if (fixtureRaw) {
+        let fixture;
+        try {
+            fixture = JSON.parse(fixtureRaw);
+        }
+        catch {
+            return { stdout: '', stderr: 'invalid APT_TRIAGE_GH_FIXTURE JSON', exitCode: 1 };
+        }
+        const key = ghFixtureKey(args);
+        const scripted = fixture[key];
+        if (!scripted) {
+            // No scripted entry → treat as gh missing so tests must be explicit.
+            return { stdout: '', stderr: `no fixture for ${key}`, exitCode: 127, code: 'ENOENT' };
+        }
+        return {
+            stdout: typeof scripted.stdout === 'string' ? scripted.stdout : '',
+            stderr: typeof scripted.stderr === 'string' ? scripted.stderr : '',
+            exitCode: typeof scripted.exitCode === 'number' ? scripted.exitCode : 0,
+            ...(scripted.code ? { code: scripted.code } : {}),
+        };
+    }
+    try {
+        const stdout = execFileSync('gh', args, {
+            cwd,
+            encoding: 'utf-8',
+            stdio: ['ignore', 'pipe', 'pipe'],
+        });
+        return { stdout: stdout ?? '', stderr: '', exitCode: 0 };
+    }
+    catch (e) {
+        // execFileSync throws on non-zero exit AND on spawn failure (ENOENT).
+        return {
+            stdout: typeof e?.stdout === 'string' ? e.stdout : '',
+            stderr: typeof e?.stderr === 'string' ? e.stderr : (e?.message ?? String(e)),
+            exitCode: typeof e?.status === 'number' ? e.status : 1,
+            ...(e?.code ? { code: e.code } : {}),
+        };
+    }
+}
+/**
+ * Truncate a gh stderr message to a plain ~200-char string for the error
+ * envelope. NEVER returns an Error object / stacktrace (AC6).
+ *
+ * @param {string} stderr
+ * @returns {string}
+ */
+function ghErrorMessage(stderr) {
+    return String(stderr ?? '')
+        .trim()
+        .slice(0, 200);
+}
+/**
+ * Build the structured `gh` error envelope (ID-04). The adapter NEVER
+ * throws past its own boundary; every failure routes here.
+ *
+ * @param {string} reason
+ * @param {string} message
+ */
+function ghError(reason, message) {
+    return { status: 'error', backend: 'github-issues', reason, error: ghErrorMessage(message) };
+}
+/**
+ * Preflight: gh present? authenticated? remote/repo resolvable? (ID-05).
+ * Short-circuits to an error envelope on the first failure; on success
+ * returns the resolved `owner/repo` for deterministic `--repo` passing.
+ *
+ * @param {string} cwd
+ * @returns {{ ok: true, repo: string } | { ok: false, envelope: object }}
+ */
+function ghPreflight(cwd) {
+    const version = runGh(['--version'], cwd);
+    if (version.code === 'ENOENT' || version.exitCode === 127) {
+        return { ok: false, envelope: ghError('gh-unavailable', 'gh CLI not found on PATH') };
+    }
+    if (version.exitCode !== 0) {
+        return { ok: false, envelope: ghError('gh-unavailable', version.stderr) };
+    }
+    const auth = runGh(['auth', 'status'], cwd);
+    if (auth.exitCode !== 0) {
+        return { ok: false, envelope: ghError('gh-unauthenticated', auth.stderr) };
+    }
+    const repo = runGh(['repo', 'view', '--json', 'nameWithOwner', '--jq', '.nameWithOwner'], cwd);
+    if (repo.exitCode !== 0) {
+        return { ok: false, envelope: ghError('no-remote', repo.stderr) };
+    }
+    const nameWithOwner = repo.stdout.trim();
+    if (!nameWithOwner) {
+        return { ok: false, envelope: ghError('no-remote', 'gh repo view returned no nameWithOwner') };
+    }
+    return { ok: true, repo: nameWithOwner };
+}
+/**
+ * Parse the issue number + url from `gh issue create` stdout. gh prints
+ * the issue URL as the trailing line; the number is the path tail
+ * (`.../issues/N`). Documented parse assumption (spec Further Notes).
+ *
+ * @param {string} stdout
+ * @returns {{ issue_number: number, issue_url: string } | null}
+ */
+function parseCreatedIssue(stdout) {
+    const url = String(stdout ?? '')
+        .trim()
+        .split('\n')
+        .filter((l) => l.includes('/issues/'))
+        .pop();
+    if (!url)
+        return null;
+    const m = url.match(/\/issues\/(\d+)\b/);
+    if (!m)
+        return null;
+    return { issue_number: Number(m[1]), issue_url: url.trim() };
+}
+/**
+ * github-issues adapter (ID-01/02/03/04/05). Mirrors triage state to a
+ * real GitHub issue via the `gh` CLI: first mirror CREATES an issue,
+ * subsequent transitions UPDATE the SAME issue (label swap), and a
+ * transition to `wontfix` CLOSES it as "not planned". Persists the issue
+ * pointer onto `triage.json` (like local-only) so the pointer survives.
+ *
+ * Precedence (spec Further Notes): the local triage.json write is the
+ * caller's responsibility for local-only; here, the github backend is the
+ * sole persistence path, so this adapter writes triage.json itself with
+ * the github block attached. Label ops are best-effort (AC8): a failed
+ * label edit degrades to a warnings[] entry, the open/closed state change
+ * still lands.
+ *
+ * @param {string} absProjectDir
+ * @param {string} taskId
+ * @param {object} record  the (init or post-transition) triage record; mutated to carry `record.github`
+ * @returns {{ status: string, backend: 'github-issues', [k: string]: unknown }}
+ */
+function mirrorToGithubIssues(absProjectDir, taskId, record) {
+    const cwd = absProjectDir;
+    const prefix = readLabelVocabulary(absProjectDir);
+    const stateLabel = (state) => `${prefix}:${state}`;
+    const pre = ghPreflight(cwd);
+    if (!pre.ok)
+        return pre.envelope;
+    const repo = pre.repo;
+    const warnings = [];
+    const persist = () => writeTriage(triagePath(absProjectDir, taskId), record);
+    // CREATE path: no issue yet on the record.
+    if (!record.github || typeof record.github.issue_number !== 'number') {
+        const labels = [];
+        if (typeof record.category === 'string' && record.category)
+            labels.push(record.category);
+        labels.push(stateLabel(record.state));
+        const createArgs = [
+            'issue',
+            'create',
+            '--title',
+            `triage: ${taskId}`,
+            '--body',
+            `Triage state: ${record.state}${record.category ? ` (${record.category})` : ''}`,
+            '--repo',
+            repo,
+        ];
+        for (const l of labels)
+            createArgs.push('--label', l);
+        let res = runGh(createArgs, cwd);
+        if (res.exitCode !== 0) {
+            // AC8: a label that doesn't exist in the repo fails the create.
+            // Retry WITHOUT label flags so the issue still gets created.
+            const noLabelArgs = createArgs.filter((a, i) => a !== '--label' && createArgs[i - 1] !== '--label');
+            const retry = runGh(noLabelArgs, cwd);
+            if (retry.exitCode !== 0) {
+                return ghError('gh-command-failed', res.stderr || retry.stderr);
+            }
+            warnings.push(`label(s) not applied on create: ${ghErrorMessage(res.stderr)}`);
+            res = retry;
+        }
+        const parsed = parseCreatedIssue(res.stdout);
+        if (!parsed) {
+            return ghError('gh-command-failed', `could not parse issue URL from: ${res.stdout}`);
+        }
+        record.github = { issue_number: parsed.issue_number, issue_url: parsed.issue_url, repo };
+        persist();
+        return {
+            status: 'ok',
+            backend: 'github-issues',
+            action: 'created',
+            issue_number: parsed.issue_number,
+            issue_url: parsed.issue_url,
+            warnings,
+        };
+    }
+    // UPDATE / CLOSE path: the record already points at an issue.
+    const issueNumber = record.github.issue_number;
+    const issueRepo = typeof record.github.repo === 'string' ? record.github.repo : repo;
+    // The previous state is the `from` of the last transition (the one that
+    // produced this record); on init there are no transitions.
+    const txs = Array.isArray(record.transitions) ? record.transitions : [];
+    const lastTx = txs.length > 0 ? txs[txs.length - 1] : null;
+    const oldLabel = lastTx ? stateLabel(lastTx.from) : null;
+    const newLabel = stateLabel(record.state);
+    const editArgs = ['issue', 'edit', String(issueNumber), '--repo', issueRepo];
+    if (oldLabel)
+        editArgs.push('--remove-label', oldLabel);
+    editArgs.push('--add-label', newLabel);
+    const edit = runGh(editArgs, cwd);
+    if (edit.exitCode !== 0) {
+        // AC8: label op failed (e.g. label not in repo). Degrade: skip the
+        // label swap, still perform the open/closed state change, warn.
+        warnings.push(`label swap skipped: ${ghErrorMessage(edit.stderr)}`);
+    }
+    if (record.state === 'wontfix') {
+        const close = runGh(['issue', 'close', String(issueNumber), '--repo', issueRepo, '--reason', 'not planned'], cwd);
+        if (close.exitCode !== 0) {
+            return ghError('gh-command-failed', close.stderr);
+        }
+        record.github = {
+            issue_number: issueNumber,
+            issue_url: record.github.issue_url,
+            repo: issueRepo,
+        };
+        persist();
+        return {
+            status: 'ok',
+            backend: 'github-issues',
+            action: 'closed',
+            issue_number: issueNumber,
+            issue_url: record.github.issue_url,
+            warnings,
+        };
+    }
+    record.github = { issue_number: issueNumber, issue_url: record.github.issue_url, repo: issueRepo };
+    persist();
+    return {
+        status: 'ok',
+        backend: 'github-issues',
+        action: 'updated',
+        issue_number: issueNumber,
+        issue_url: record.github.issue_url,
+        warnings,
+    };
+}
+/**
+ * Apply the backend mirror step. local-only writes to disk; github-issues
+ * dispatches to the gh-CLI adapter; app-inbox stays a not-implemented stub
+ * so callers can handle it gracefully.
  *
  * @param {string} backend
  * @param {string} absProjectDir
  * @param {string} taskId
  * @param {object} record
- * @returns {null | { status: 'not-implemented', backend: string, v2_issue: string }}
+ * @returns {null | { status: string, backend?: string, [k: string]: unknown }}
  */
 function mirrorToBackend(backend, absProjectDir, taskId, record) {
     if (backend === 'local-only') {
         writeTriage(triagePath(absProjectDir, taskId), record);
         return null;
     }
-    // v1 stubs: github-issues and app-inbox return not-implemented.
+    if (backend === 'github-issues') {
+        return mirrorToGithubIssues(absProjectDir, taskId, record);
+    }
+    // v1 stub: app-inbox returns not-implemented (out of scope per spec).
     return { status: 'not-implemented', backend, v2_issue: '#TBD' };
 }
+/**
+ * Map a non-null mirror envelope to its exit code. github-issues errors
+ * exit 1 (ID-04); the not-implemented stub and ok envelopes exit 0.
+ *
+ * @param {{ status: string, [k: string]: unknown }} mirror
+ * @returns {number}
+ */
+function mirrorExitCode(mirror) {
+    return mirror.status === 'error' ? 1 : 0;
+}
 /**
  * Entry: `apt-tools triage <subcommand> <project-dir> [flags]`.
  */
@@ -184,9 +502,16 @@ export function cmdTriage(subcommand, projectDir, extraArgs) {
             transitions: [],
             extra,
         };
-        const stub = mirrorToBackend(backend, absProjectDir, taskId, record);
-        if (stub)
-            return exitWith({ command: 'triage-init', ...stub }, 0);
+        const mirror = mirrorToBackend(backend, absProjectDir, taskId, record);
+        if (mirror) {
+            // github-issues success merges its action/issue fields and echoes
+            // the persisted record (which now carries `github`); errors + the
+            // app-inbox not-implemented stub pass through as-is.
+            const merged = mirror.status === 'ok'
+                ? { command: 'triage-init', ...mirror, record }
+                : { command: 'triage-init', ...mirror };
+            return exitWith(merged, mirrorExitCode(mirror));
+        }
         return ok({ status: 'ok', command: 'triage-init', backend, record });
     }
     if (subcommand === 'transition') {
@@ -236,10 +561,18 @@ export function cmdTriage(subcommand, projectDir, extraArgs) {
             category: current.category,
             extra: current.extra ?? {},
             transitions: [...(current.transitions || []), transition],
+            // ID-02: carry the github issue pointer forward so subsequent
+            // transitions target the SAME issue instead of creating a duplicate.
+            // Only set when present (local-only records never carry it).
+            ...(current.github ? { github: current.github } : {}),
         };
-        const stub = mirrorToBackend(backend, absProjectDir, taskId, next);
-        if (stub)
-            return exitWith({ command: 'triage-transition', ...stub }, 0);
+        const mirror = mirrorToBackend(backend, absProjectDir, taskId, next);
+        if (mirror) {
+            const merged = mirror.status === 'ok'
+                ? { command: 'triage-transition', ...mirror, transition, record: next }
+                : { command: 'triage-transition', ...mirror };
+            return exitWith(merged, mirrorExitCode(mirror));
+        }
         return ok({
             status: 'ok',
             command: 'triage-transition',

package/dist/cli/commands/triage.mjs.map

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package/dist/cli/commands/uninstall.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"uninstall.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/uninstall.mjs"],"names":[],"mappings":"AA8XA;;;;;GAKG;AACH,yCAHW,MAAM,cACN,MAAM,EAAE,uDAyDlB;;WA3Ya,OAAO;SACP,OAAO;YACP,OAAO;aACP,MAAM,GAAC,IAAI"}
+{"version":3,"file":"uninstall.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/uninstall.mjs"],"names":[],"mappings":"AAiYA;;;;;GAKG;AACH,yCAHW,MAAM,cACN,MAAM,EAAE,uDAyDlB;;WA3Ya,OAAO;SACP,OAAO;YACP,OAAO;aACP,MAAM,GAAC,IAAI"}

package/dist/cli/commands/uninstall.mjs

@@ -7,10 +7,10 @@
  * root — unknown files are left alone and the directory is preserved if
  * it would otherwise be non-empty.
  *
- * The APT section in `CLAUDE.md` / `AGENTS.md` is stripped between the
- * `<!-- APT:framework-start -->` / `<!-- APT:framework-end -->` markers
- * (same injection surface as `injectInstructionFile`). If the file becomes
- * empty after the strip, the file is removed too.
+ * The APT section in `CLAUDE.md` / `AGENTS.md` / `GEMINI.md` is stripped
+ * between the `<!-- APT:framework-start -->` / `<!-- APT:framework-end -->`
+ * markers (same injection surface as `injectInstructionFile`). If the file
+ * becomes empty after the strip, the file is removed too.
  *
  * Flags:
  *   --purge               Also delete `.aperant/` state. Default: preserve
@@ -24,13 +24,16 @@ import { existsSync, readdirSync, readFileSync, rmdirSync, rmSync, statSync, unl
 import { join, resolve } from 'node:path';
 import { MANIFEST_FILENAME } from '../install/manifest.mjs';
 import { RUNTIMES } from '../install/runtime-detect.mjs';
+import { APT_SECTION_STRIP_RE as APT_SECTION_RE } from '../util/aperant-section.mjs';
 import { err, ok } from '../util/result.mjs';
-const APT_SECTION_RE = /<!-- APT:framework-start -->[\s\S]*?<!-- APT:framework-end -->\n?/;
 const APT_GITIGNORE_BLOCK_RE = /# APT:gitignore-start[\s\S]*?# APT:gitignore-end\n?/;
 /**
  * Files inside the project root that may carry the APT-injected section.
+ * Derived from RUNTIMES.nativeInstructionFile so the list stays in sync with
+ * whatever targets `init` writes — the same drift class as the bug this PR
+ * fixes cannot occur here.
  */
-const INSTRUCTION_FILES = ['CLAUDE.md', 'AGENTS.md'];
+const INSTRUCTION_FILES = [...new Set(RUNTIMES.map((r) => r.nativeInstructionFile).filter(Boolean))];
 /**
  * @typedef {Object} UninstallFlags
  * @property {boolean} purge
@@ -286,8 +289,8 @@ function removeRuntime(target, flags) {
     };
 }
 /**
- * Strip the APT-injected section from CLAUDE.md / AGENTS.md. If the
- * remaining file is empty, the file itself is removed.
+ * Strip the APT-injected section from CLAUDE.md / AGENTS.md / GEMINI.md. If
+ * the remaining file is empty, the file itself is removed.
  *
  * @param {string} targetDir
  * @param {UninstallFlags} flags