@aperant/framework 0.8.0 → 0.8.4

package/dist/cli/commands/driver-doctor.mjs

@@ -0,0 +1,291 @@
+/**
+ * commands/driver-doctor.mjs — `apt-tools driver doctor <projectDir>`.
+ *
+ * Validates every discovered driver against:
+ *   1. The manifest JSON-Schema (manifest-validator.mjs).
+ *   2. IDL conformance — every declared capability has a function export.
+ *      NOTE: this step necessarily imports driver.mjs, which RUNS the
+ *      driver's top-level module code. For that reason we trust-gate the
+ *      import: bundled drivers (first-party signed, sitting under
+ *      packages/framework/drivers/) are always imported; user drivers
+ *      under .aperant/drivers/ are imported only when policy + TOFU say
+ *      it is safe. A user driver that fails the gate is reported with
+ *      `idl_conformant: false` and `idl_skipped_reason: <decision>`
+ *      rather than executed.
+ *   3. Preflight commands (declared as structured local_command per
+ *      ID-03). For each preflight whose declared transport is the
+ *      structured `{ binary, args[] }` shape, we run it via execFile
+ *      (exec.mjs — no shell) and record pass/fail + missing_deps.
+ *      Preflights without a structured `command` (declaration-only) are
+ *      marked `pending` — there is nothing to execute.
+ *
+ * Emits a JSON envelope listing pass/fail per driver. Third-party driver
+ * authors invoke this before publishing.
+ */
+import { existsSync, readdirSync, readFileSync } from 'node:fs';
+import { join, resolve } from 'node:path';
+import { fileURLToPath } from 'node:url';
+import { err, ok } from '../util/result.mjs';
+import { execLocalCommand } from '../verify-proof/exec.mjs';
+import { IDL_VERB_NAMES } from '../verify-proof/idl/index.mjs';
+import { validateManifest } from '../verify-proof/manifest-validator.mjs';
+import { decide, readPolicy, readTofuLock } from '../verify-proof/trust.mjs';
+/**
+ * @typedef {Object} DriverDoctorReport
+ * @property {string} driverId
+ * @property {string} version
+ * @property {string} locality
+ * @property {boolean} manifest_valid
+ * @property {Array<{path: string, message: string}>} manifest_errors
+ * @property {boolean} idl_conformant
+ * @property {string[]} missing_exports
+ * @property {string[]} unknown_capabilities
+ * @property {string} [idl_skipped_reason] — present when conformance was skipped because the trust gate blocked driver.mjs import
+ * @property {'pending' | 'pass' | 'fail' | 'skipped'} preflight_status
+ * @property {string[]} missing_deps
+ * @property {string} [publisher_warning] — surfaced when a non-first-party manifest claims first_party_signed (v1 has no signature verification)
+ */
+/**
+ * Scan a drivers directory for manifest.json files. Returns
+ * (manifest, dir, locality) tuples.
+ * @param {string} rootDir
+ * @param {'bundled' | 'user'} locality
+ */
+function scanDriversDir(rootDir, locality) {
+    const out = [];
+    if (!existsSync(rootDir))
+        return out;
+    for (const entry of readdirSync(rootDir, { withFileTypes: true })) {
+        if (!entry.isDirectory())
+            continue;
+        const driverDir = join(rootDir, entry.name);
+        const manifestPath = join(driverDir, 'manifest.json');
+        if (!existsSync(manifestPath))
+            continue;
+        let manifest;
+        try {
+            manifest = JSON.parse(readFileSync(manifestPath, 'utf-8'));
+        }
+        catch (e) {
+            out.push({ malformed: true, dir: driverDir, locality, parse_error: String(e) });
+            continue;
+        }
+        out.push({ manifest, dir: driverDir, locality });
+    }
+    return out;
+}
+/**
+ * @param {object} manifest
+ * @param {string} driverDir
+ * @returns {Promise<{idl_conformant: boolean, missing_exports: string[], unknown_capabilities: string[]}>}
+ */
+async function checkIdlConformance(manifest, driverDir) {
+    const driverPath = join(driverDir, 'driver.mjs');
+    if (!existsSync(driverPath)) {
+        return {
+            idl_conformant: false,
+            missing_exports: ['driver.mjs not found'],
+            unknown_capabilities: [],
+        };
+    }
+    const missing_exports = [];
+    const unknown_capabilities = [];
+    const idlSet = new Set(IDL_VERB_NAMES);
+    try {
+        const mod = await import(driverPath);
+        for (const cap of manifest.capabilities ?? []) {
+            if (!idlSet.has(cap)) {
+                unknown_capabilities.push(cap);
+                continue;
+            }
+            if (typeof mod[cap] !== 'function') {
+                missing_exports.push(cap);
+            }
+        }
+    }
+    catch (e) {
+        return {
+            idl_conformant: false,
+            missing_exports: [`driver.mjs import failed: ${String(e)}`],
+            unknown_capabilities: [],
+        };
+    }
+    return {
+        idl_conformant: missing_exports.length === 0 && unknown_capabilities.length === 0,
+        missing_exports,
+        unknown_capabilities,
+    };
+}
+/**
+ * Run a driver's preflight checks. Each declared preflight with a
+ * structured `command: { binary, args[] }` is executed via execFile
+ * (no shell). Preflights without a structured command are reported as
+ * `pending` — there is nothing to execute. Empty preflight list is
+ * `skipped`.
+ *
+ * @param {object} manifest
+ * @returns {Promise<{preflight_status: 'pending'|'pass'|'fail'|'skipped', missing_deps: string[]}>}
+ */
+async function runPreflight(manifest) {
+    const preflight = Array.isArray(manifest.preflight) ? manifest.preflight : [];
+    if (preflight.length === 0)
+        return { preflight_status: 'skipped', missing_deps: [] };
+    const missing_deps = [];
+    let executed = 0;
+    let failed = false;
+    for (const check of preflight) {
+        // Only execute when the preflight declares a structured local-command
+        // shape. Anything else (no command, or non-structured) is left as
+        // declaration-only — caller can drive it explicitly.
+        const cmd = check?.command;
+        if (cmd === undefined ||
+            cmd === null ||
+            typeof cmd !== 'object' ||
+            typeof cmd.binary !== 'string' ||
+            !Array.isArray(cmd.args) ||
+            cmd.args.some((a) => typeof a !== 'string')) {
+            continue;
+        }
+        executed++;
+        try {
+            await execLocalCommand({ transport: { local_command: cmd } }, [], { timeout: 5000 });
+        }
+        catch {
+            failed = true;
+            if (check.required !== false) {
+                missing_deps.push(check.name ?? cmd.binary);
+            }
+        }
+    }
+    if (executed === 0)
+        return { preflight_status: 'pending', missing_deps: [] };
+    return { preflight_status: failed ? 'fail' : 'pass', missing_deps };
+}
+/**
+ * Trust-gate the driver.mjs import. Bundled drivers (locality='bundled')
+ * always pass — they live in packages/framework/drivers/ and are first-
+ * party. User drivers go through the policy + TOFU decision; only
+ * `allow` permits the dynamic import.
+ *
+ * @param {object} manifest
+ * @param {'bundled'|'user'} locality
+ * @param {string} projectDir
+ * @returns {{ok: true} | {ok: false, reason: string}}
+ */
+function trustGate(manifest, locality, projectDir) {
+    if (locality === 'bundled')
+        return { ok: true };
+    const policy = readPolicy(projectDir);
+    const tofu = readTofuLock(projectDir);
+    const decision = decide(manifest, tofu, policy);
+    if (decision.decision === 'allow')
+        return { ok: true };
+    return { ok: false, reason: decision.reason };
+}
+/**
+ * v1 has no signature verification (spec §Out of Scope). A non-Aperant
+ * publisher claiming `first_party_signed` is suspicious — surface a
+ * warning so the operator notices.
+ *
+ * @param {object} manifest
+ * @returns {string | undefined}
+ */
+function publisherWarning(manifest) {
+    const tier = manifest?.trust?.tier;
+    if (tier !== 'first_party_signed')
+        return undefined;
+    const npmScope = manifest?.trust?.publisher?.npm_scope;
+    const githubOrg = manifest?.trust?.publisher?.github_org;
+    const looksLikeAperant = npmScope === '@aperant' || githubOrg === 'Mikalsen-AI';
+    if (looksLikeAperant)
+        return undefined;
+    return `trust.tier=first_party_signed but publisher is not @aperant — v1 does not verify signatures; treat tier as advisory`;
+}
+/**
+ * @param {string} projectDir
+ * @param {string[]} [_extra]
+ */
+export async function cmdDriverDoctor(projectDir, _extra = []) {
+    if (!projectDir)
+        return err('Usage: apt-tools driver doctor <project-dir>');
+    const target = resolve(projectDir);
+    // fileURLToPath is portable across POSIX + Windows; new URL(...).pathname
+    // returns '/C:/...' on Windows which resolve() does not handle correctly.
+    const frameworkRoot = fileURLToPath(new URL('../../..', import.meta.url));
+    const bundled = scanDriversDir(join(frameworkRoot, 'drivers'), 'bundled');
+    const user = scanDriversDir(join(target, '.aperant/drivers'), 'user');
+    const discovered = [...bundled, ...user];
+    const drivers = [];
+    for (const d of discovered) {
+        if (d.malformed) {
+            drivers.push({
+                driverId: '(malformed)',
+                version: '?',
+                locality: d.locality,
+                manifest_valid: false,
+                manifest_errors: [{ path: '/', message: d.parse_error }],
+                idl_conformant: false,
+                missing_exports: [],
+                unknown_capabilities: [],
+                preflight_status: 'skipped',
+                missing_deps: [],
+            });
+            continue;
+        }
+        const manifest = d.manifest;
+        const schemaResult = validateManifest(manifest);
+        const manifest_valid = schemaResult.valid === true;
+        const manifest_errors = schemaResult.valid === false ? schemaResult.errors : [];
+        let idlResult = { idl_conformant: false, missing_exports: [], unknown_capabilities: [] };
+        let idl_skipped_reason;
+        if (manifest_valid) {
+            const gate = trustGate(manifest, d.locality, target);
+            if (gate.ok) {
+                idlResult = await checkIdlConformance(manifest, d.dir);
+            }
+            else {
+                // Trust gate denied. Do NOT dynamic-import the driver — that
+                // would execute arbitrary third-party code under the audit
+                // command. Report idl_conformant=false with the gate reason
+                // so the operator sees exactly why conformance was not run.
+                idl_skipped_reason = `trust gate denied: ${gate.reason}`;
+            }
+        }
+        let preflightResult = { preflight_status: 'skipped', missing_deps: [] };
+        if (manifest_valid) {
+            preflightResult = await runPreflight(manifest);
+        }
+        const entry = {
+            driverId: manifest.driverId ?? '(unknown)',
+            version: manifest.version ?? '?',
+            locality: d.locality,
+            manifest_valid,
+            manifest_errors,
+            idl_conformant: idlResult.idl_conformant,
+            missing_exports: idlResult.missing_exports,
+            unknown_capabilities: idlResult.unknown_capabilities,
+            preflight_status: preflightResult.preflight_status,
+            missing_deps: preflightResult.missing_deps,
+        };
+        if (idl_skipped_reason !== undefined)
+            entry.idl_skipped_reason = idl_skipped_reason;
+        const warning = publisherWarning(manifest);
+        if (warning !== undefined)
+            entry.publisher_warning = warning;
+        drivers.push(entry);
+    }
+    const all_pass = drivers.every((d) => d.manifest_valid && d.idl_conformant);
+    return ok({
+        status: 'ok',
+        command: 'driver-doctor',
+        projectDir: target,
+        drivers,
+        summary: {
+            total: drivers.length,
+            pass: drivers.filter((d) => d.manifest_valid && d.idl_conformant).length,
+            fail: drivers.filter((d) => !d.manifest_valid || !d.idl_conformant).length,
+            overall: all_pass ? 'pass' : 'fail',
+        },
+    });
+}
+//# sourceMappingURL=driver-doctor.mjs.map

package/dist/cli/commands/driver-doctor.mjs.map

@@ -0,0 +1 @@
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package/dist/cli/commands/gate.mjs

@@ -118,6 +118,19 @@ async function cmdGateCheck(projectDir, extraArgs) {
     const cacheMod = await loadCache();
     const cache = cacheMod ? cacheMod.readCache(ctx.taskDir) : {};
     for (const gate of gates) {
+        // Applicability check fires BEFORE cache lookup or check() execution.
+        // Gates that don't apply to the active profile (lite vs full-pipeline)
+        // short-circuit with a skip verdict. Skip results are intentionally
+        // NOT cached (see status: 'skip' branch below), so a track change on
+        // the same task immediately reflects in the next gate-check.
+        if (typeof gate.applies_to_profile === 'function' && gate.applies_to_profile(ctx) === false) {
+            skipped.push({
+                id: gate.id,
+                severity: gate.severity,
+                reason: `profile-not-applicable: ${ctx.profile}`,
+            });
+            continue;
+        }
         let verdict;
         let cached = false;
         let inputHash = null;
@@ -226,6 +239,7 @@ async function cmdGateCheck(projectDir, extraArgs) {
         command: 'gate-check',
         skill,
         task_id: taskId,
+        profile: ctx.profile,
         passed: passed.map((p) => p.id),
         warned: warned.map((w) => ({ id: w.id, reason: w.reason })),
         skipped: skipped.map((s) => ({ id: s.id, reason: s.reason })),

package/dist/cli/commands/gate.mjs.map

@@ -1 +1 @@
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package/dist/cli/commands/init.d.mts.map

@@ -1 +1 @@
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+{"version":3,"file":"init.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/init.mjs"],"names":[],"mappings":"AA4EA;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAgCG;AACH,wCAHW,MAAM,EAAE,GACN;IAAE,QAAQ,EAAE,MAAM,EAAE,CAAC;IAAC,iBAAiB,EAAE,OAAO,CAAC;IAAC,MAAM,EAAE,MAAM,GAAC,IAAI,CAAC;IAAC,WAAW,EAAE,OAAO,CAAC;IAAC,aAAa,EAAE,OAAO,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,GAAC,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC,CAAC;IAAC,mBAAmB,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,OAAO,CAAC;IAAC,aAAa,EAAE,OAAO,CAAC;IAAC,qBAAqB,EAAE,OAAO,CAAC;IAAC,UAAU,EAAE,OAAO,CAAA;CAAE,CAmE1S;AAwzBD;;;;;;;GAOG;AACH,8CAHW,MAAM,CAAC,MAAM,EAAE,GAAG,CAAC,WACnB,cAAc,0BAoDxB;AAoED;;;;;;GAMG;AACH,oCAJW,MAAM,cACN,MAAM,EAAE,GACN,OAAO,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CA+L3D;;;;;cAtnCa,MAAM,EAAE;;;;qBACR,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC;;;;gBACP,MAAM,GAAC,MAAM;;;;4BACb,MAAM,EAAE;;;;aACR,OAAO;;;;mBACP,OAAO;eACP,OAAO,0BAA0B,EAAE,eAAe;;;;;;;;;aAErC,MAAM;eAAS,OAAO;cAAQ,MAAM;iBAAW,MAAM;;;;;;aAErD,MAAM;eAAS,OAAO;gBAAU,MAAM;;;;;;kBAEvC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;0BAAoB,OAAO,EAAE;2BAAqB,OAAO,EAAE;oBAAc,OAAO,EAAE"}

package/dist/cli/commands/init.mjs

@@ -3,8 +3,9 @@
  * rewrite, 2026-04).
  *
  * Replaces the previous Claude-only `cp -r` installer with the per-runtime
- * transform pipeline (src/cli/install/pipeline.mjs). All 14 runtime targets
- * supported via `--<runtime>` flags or `--all`. Default with no flags in
+ * transform pipeline (src/cli/install/pipeline.mjs). Registered runtime
+ * targets are supported via `--<runtime>` flags or `--all`. Default with no
+ * flags in
  * non-TTY mode → `--claude` (backward compat — existing skills invoke
  * `apt-tools init <dir>` with no flags). Default in TTY → interactive prompt
  * with auto-detection markers.
@@ -28,8 +29,9 @@ import { buildAperantGitignoreTemplate } from '../config/upgrade-gitignore.mjs';
 import { detectPublicRemote } from '../git/remote.mjs';
 import { detectArchetype } from '../install/archetype.mjs';
 import { installKernel } from '../install/install-kernel.mjs';
+import { MANIFEST_FILENAME } from '../install/manifest.mjs';
 import { discoverCanonicalFiles, runInstall, writeLastInstallSummary, } from '../install/pipeline.mjs';
-import { RUNTIMES, suggestRuntimes } from '../install/runtime-detect.mjs';
+import { getRuntime, RUNTIMES, suggestRuntimes } from '../install/runtime-detect.mjs';
 import { runLegacyCleanup } from '../install/runtime-migrate.mjs';
 import { CLASS_A_SETTINGS, CLASS_B_SETTINGS, findClassDescriptor, parseClassFlags, } from '../install/setting-class.mjs';
 import { detectAgentRuntime } from '../util/agent-runtime.mjs';
@@ -350,6 +352,44 @@ function selectRuntimes(targetDir, parsedFlags) {
     }
     return [...suggested];
 }
+/**
+ * Return the runtime ids that should be installed during a no-schema-drift
+ * init. A current config is not enough to prove runtime files exist on this
+ * machine: team repos often carry `.aperant/config.json` but not local
+ * runtime roots/manifests.
+ *
+ * @param {string} targetDir
+ * @param {string[]} runtimeIds
+ * @returns {string[]}
+ */
+function runtimesMissingManifest(targetDir, runtimeIds) {
+    const missing = [];
+    for (const id of runtimeIds) {
+        const runtime = getRuntime(id);
+        if (!runtime)
+            continue;
+        const manifestPath = join(targetDir, runtime.installRoot, MANIFEST_FILENAME);
+        if (!existsSync(manifestPath))
+            missing.push(id);
+    }
+    return missing;
+}
+/**
+ * Current-schema init should still run the runtime installer when the user
+ * explicitly requested runtimes, when --force-runtimes is present, or when
+ * local runtime roots are suggested but have no apt manifest.
+ *
+ * @param {string} targetDir
+ * @param {ReturnType<typeof parseInstallFlags>} parsedFlags
+ * @returns {string[]}
+ */
+function selectNoDriftRuntimeInstallIds(targetDir, parsedFlags) {
+    if (parsedFlags.forceRuntimes)
+        return selectRuntimes(targetDir, parsedFlags);
+    if (parsedFlags.runtimes_explicit)
+        return parsedFlags.runtimes;
+    return runtimesMissingManifest(targetDir, suggestRuntimes(targetDir));
+}
 /**
  * Non-TTY / scripted path — derive answers from flags + sensible defaults,
  * gated by the Class A/B classifier (spec R2 + R3).
@@ -600,11 +640,16 @@ async function interactiveInterview(targetDir, version, canonicalRoot, archetype
             migration.applied_defaults.length === 0 &&
             migration.auto_added.length === 0;
         if (noDrift) {
-            // 0.6.7 (Bug 2 fix) — `--force-runtimes` bypasses the TTY
-            // "Nothing to do." outro so the runtime walker re-stamps every
-            // manifest; cmdInit's force-runtimes synthesis path takes over.
-            if (parsedFlags.forceRuntimes) {
-                return { upgrade_noop: true, skipBootstrap, migration };
+            const runtimeInstallIds = selectNoDriftRuntimeInstallIds(targetDir, parsedFlags);
+            // Runtime repair bypasses the TTY "Nothing to do." outro so the
+            // runtime walker can re-stamp missing manifests first.
+            if (runtimeInstallIds.length > 0) {
+                return {
+                    upgrade_noop: true,
+                    skipBootstrap,
+                    migration,
+                    runtime_reinstall_runtimes: runtimeInstallIds,
+                };
             }
             process.stdout.write(`\n${aperantBanner(version)}\n\n`);
             clack.intro('install');
@@ -1058,20 +1103,19 @@ export async function cmdInit(projectDir, extraArgs = []) {
                 rerun_with: answers.rerun_with,
             }, 2);
         }
-        // Upgrade no-drift — short-circuit before installRuntimes.
-        // /apt:update is the right surface for refreshing skills on a
-        // no-drift run; init's job here is to confirm the schema is current.
+        const noDriftRuntimeInstallIds = answers?.upgrade_noop
+            ? (answers.runtime_reinstall_runtimes ??
+                selectNoDriftRuntimeInstallIds(installTarget, parsedFlags))
+            : [];
+        // Upgrade no-drift with no runtime work — short-circuit before
+        // installRuntimes. /apt:update remains the right surface for refreshing
+        // already-manifested skills; init only repairs selected or suggested
+        // runtime roots that lack manifests.
         // The bootstrap auto-chain still runs (it's deterministic and
         // idempotent — preserves PROJECT.md, refreshes sidecar from it).
         // In TTY mode clack already rendered "Nothing to do." to stdout,
         // so suppress the JSON envelope (matches the cancelled path).
-        //
-        // 0.6.7 (Bug 2 fix) — `--force-runtimes` bypasses this short-circuit
-        // so `/apt:update` can re-stamp every runtime manifest even when
-        // `.aperant/config.json` is at the current schema. We synthesize a
-        // real InstallAnswers shape from the existing config so
-        // installRuntimes + finishInit run their normal upgrade path.
-        if (answers?.upgrade_noop && !parsedFlags.forceRuntimes) {
+        if (answers?.upgrade_noop && noDriftRuntimeInstallIds.length === 0) {
             if (interactiveTty)
                 return rawText('', 0);
             const bootstrap = answers.skipBootstrap
@@ -1087,18 +1131,14 @@ export async function cmdInit(projectDir, extraArgs = []) {
                 message: `Already up to date — v${version}`,
             });
         }
-        // 0.6.7 (Bug 2 fix) — when forceRuntimes is set on a no-drift run,
-        // synthesize a real InstallAnswers shape from the existing config so
-        // the runtime walker re-stamps every manifest. Visibility/autonomy/
-        // cross-verification are read from answers.migration.migrated (already
-        // in memory from nonInteractiveAnswers — avoids a second config read);
-        // runtimes resolved via selectRuntimes helper shared with the upgrade path.
+        // Current-schema runtime install — synthesize a real InstallAnswers
+        // shape from the existing config so installRuntimes + finishInit run
+        // their normal upgrade path.
         let effectiveAnswers = answers;
-        if (answers?.upgrade_noop && parsedFlags.forceRuntimes) {
+        if (answers?.upgrade_noop && noDriftRuntimeInstallIds.length > 0) {
             const existing = answers.migration?.migrated || {};
-            const runtimes = selectRuntimes(installTarget, parsedFlags);
             effectiveAnswers = {
-                runtimes,
+                runtimes: noDriftRuntimeInstallIds,
                 autonomyDefault: existing?.autonomy?.default ?? 1,
                 visibility: existing?.share?.visibility === 'team' ? 'team' : 'solo',
                 crossVerificationTools: existing?.multi_model?.cross_verification?.tools ?? [],
@@ -1110,12 +1150,15 @@ export async function cmdInit(projectDir, extraArgs = []) {
                 explicit_inputs: collectExplicitInputs(parsedFlags),
             };
         }
-        // FRAMEWORK-BUG-021 — sweep the legacy `.agents/skills/` codex tree
+        // FRAMEWORK-BUG-021 — sweep the legacy `.codex/` codex tree
         // BEFORE the install pipeline runs so the install can re-stamp
-        // `.codex/` against a clean slate. Only fires when codex is in the
-        // requested runtime set and `--keep-legacy` was not passed; the
-        // helper itself is conservative (no-op on managed installs, no-op
-        // when no legacy framework files are present).
+        // `.agents/skills/<folder>/SKILL.md` (Codex CLI's documented
+        // surface, per https://developers.openai.com/codex/skills) against
+        // a clean slate. Only fires when codex is in the requested runtime
+        // set and `--keep-legacy` was not passed; the helper itself is
+        // conservative (no-op on managed installs, no-op when no legacy
+        // framework files are present). The v0.8.2 inversion is
+        // documented in `runtime-migrate.mjs:7-12`.
         let legacyCleanup = null;
         if (effectiveAnswers.runtimes.includes('codex')) {
             if (parsedFlags.keepLegacy) {
@@ -1125,7 +1168,7 @@ export async function cmdInit(projectDir, extraArgs = []) {
                 const cleanup = runLegacyCleanup({ targetDir: installTarget });
                 legacyCleanup = { runtime: 'codex', ...cleanup };
                 if (cleanup.ran && cleanup.retained.length > 0) {
-                    process.stderr.write(`[apt-tools] legacy_cleanup retained ${cleanup.retained.length} user-added path(s) under .agents/skills/: ${cleanup.retained.join(', ')}\n`);
+                    process.stderr.write(`[apt-tools] legacy_cleanup retained ${cleanup.retained.length} user-added path(s) under .codex/: ${cleanup.retained.join(', ')}\n`);
                 }
             }
         }