@aperant/framework 0.6.7 → 0.7.3

package/dist/cli/commands/ci-watch.mjs.map

@@ -1 +1 @@
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package/dist/cli/commands/features-audit.d.mts

@@ -1,2 +1,26 @@
+/**
+ * BUG-025b — resolve where features-audit should write `*.json`.
+ * See module header for the 4-step order. Returns `{ writeRoot, redirect_notice }`
+ * on success or a synthetic error envelope (`{ error: { ... } }`) on the
+ * ambiguous-worktree case.
+ *
+ * @internal — exported for unit testing.
+ *
+ * @param {{projectDir: string, taskId?: string | null, noRedirect?: boolean}} args
+ * @returns {{writeRoot?: string, redirect_notice?: string | null, error?: {kind: string, message: string, active_worktree_tasks: string[]}}}
+ */
+export function resolveWriteRoot({ projectDir, taskId, noRedirect }: {
+    projectDir: string;
+    taskId?: string | null;
+    noRedirect?: boolean;
+}): {
+    writeRoot?: string;
+    redirect_notice?: string | null;
+    error?: {
+        kind: string;
+        message: string;
+        active_worktree_tasks: string[];
+    };
+};
 export function cmdFeaturesAudit(projectDir: any, extraArgs: any): import("../util/result.mjs").CommandResult;
 //# sourceMappingURL=features-audit.d.mts.map

package/dist/cli/commands/features-audit.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"features-audit.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/features-audit.mjs"],"names":[],"mappings":"AAsBA,8GA0DC"}
+{"version":3,"file":"features-audit.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/features-audit.mjs"],"names":[],"mappings":"AAmCA;;;;;;;;;;GAUG;AACH,qEAHW;IAAC,UAAU,EAAE,MAAM,CAAC;IAAC,MAAM,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAAC,UAAU,CAAC,EAAE,OAAO,CAAA;CAAC,GAChE;IAAC,SAAS,CAAC,EAAE,MAAM,CAAC;IAAC,eAAe,CAAC,EAAE,MAAM,GAAG,IAAI,CAAC;IAAC,KAAK,CAAC,EAAE;QAAC,IAAI,EAAE,MAAM,CAAC;QAAC,OAAO,EAAE,MAAM,CAAC;QAAC,qBAAqB,EAAE,MAAM,EAAE,CAAA;KAAC,CAAA;CAAC,CA0E3I;AAgCD,8GAqFC"}

package/dist/cli/commands/features-audit.mjs

@@ -11,22 +11,167 @@
  *   1. `--diff-files <a,b,c>` explicit CSV (highest priority)
  *   2. `--since <ref>` → runs `git diff --name-only <ref>..HEAD`
  *   3. fallback: `git diff HEAD --name-only` (current WIP)
+ *
+ * BUG-025b worktree-redirect: features-audit historically wrote to the
+ * invoking cwd's `.aperant/features/`, leaking generated `*.json` into
+ * main when the executor invoked it from a worktree-isolated task. The
+ * fix applies a 4-step resolution order (see resolveWriteRoot below):
+ *   (1) cwd IS a worktree root → write there (current behaviour)
+ *   (2) --task-id maps to an active non-terminal worktree task →
+ *       redirect writes to that worktree's `.aperant/features/`
+ *   (3) multiple active worktree-isolated tasks + no --task-id → error
+ *   (4) `--no-worktree-redirect` opt-out preserves layer (1) behaviour
  */
-import { execFileSync } from 'node:child_process';
-import { resolve } from 'node:path';
+import { execFileSync, spawnSync } from 'node:child_process';
+import { existsSync, readFileSync } from 'node:fs';
+import { join, resolve, sep } from 'node:path';
 import { loadDocsPolicy, matchSurfaceToPolicy } from '../docs-audit/policy.mjs';
 import { applyStubPatches, auditFeatureRegistry } from '../features/registry-audit.mjs';
 import { parseFlags } from '../util/args.mjs';
 import { err, ok } from '../util/result.mjs';
+const TERMINAL_PHASES = new Set(['completed', 'cancelled', 'closed', 'shipped', 'merged']);
+/**
+ * BUG-025b — resolve where features-audit should write `*.json`.
+ * See module header for the 4-step order. Returns `{ writeRoot, redirect_notice }`
+ * on success or a synthetic error envelope (`{ error: { ... } }`) on the
+ * ambiguous-worktree case.
+ *
+ * @internal — exported for unit testing.
+ *
+ * @param {{projectDir: string, taskId?: string | null, noRedirect?: boolean}} args
+ * @returns {{writeRoot?: string, redirect_notice?: string | null, error?: {kind: string, message: string, active_worktree_tasks: string[]}}}
+ */
+export function resolveWriteRoot({ projectDir, taskId, noRedirect }) {
+    const root = resolve(projectDir);
+    if (noRedirect === true) {
+        return { writeRoot: root, redirect_notice: null };
+    }
+    // Layer (1): cwd IS a worktree root. Worktrees have `git rev-parse
+    // --git-dir` != `git rev-parse --git-common-dir`. Falling through to
+    // the existing behaviour writes to this worktree's .aperant/features.
+    // Fast path: git sets GIT_DIR and GIT_COMMON_DIR in the environment
+    // when running inside a worktree hook context — if both are set and
+    // differ, we are in a worktree. This env-var check is ONLY valid at
+    // Layer (1) where we ask "is this process in a worktree?"; it must
+    // NOT be used to validate an untrusted external path (Layer 2 below).
+    const envDir = process.env.GIT_DIR;
+    const envCommonDir = process.env.GIT_COMMON_DIR;
+    if (envDir && envCommonDir) {
+        if (resolve(envDir) !== resolve(envCommonDir)) {
+            return { writeRoot: root, redirect_notice: null };
+        }
+    }
+    else if (isWorktreeRoot(root)) {
+        return { writeRoot: root, redirect_notice: null };
+    }
+    // Layer (2): --task-id maps to an active non-terminal worktree-isolated
+    // task → redirect.
+    const stateActive = readActiveTasks(root);
+    if (taskId) {
+        const task = stateActive[taskId];
+        if (task &&
+            !TERMINAL_PHASES.has(task.lifecycle_phase) &&
+            typeof task.worktree_path === 'string' &&
+            existsSync(task.worktree_path)) {
+            const resolvedWorktree = resolve(task.worktree_path);
+            const worktreesDir = resolve(root, '.aperant', 'worktrees') + sep;
+            const isUnderProject = resolvedWorktree.startsWith(root + sep) || resolvedWorktree === root;
+            const isUnderWorktrees = resolvedWorktree.startsWith(worktreesDir);
+            // Accept only paths under the project root, under .aperant/worktrees/,
+            // or confirmed as a real git worktree by git itself. Rejects arbitrary
+            // paths injected via a tampered state.json while preserving test
+            // fixtures that use ad-hoc worktree paths outside the project tree.
+            if (!isUnderProject && !isUnderWorktrees && !isWorktreeRoot(resolvedWorktree)) {
+                return { writeRoot: root, redirect_notice: null };
+            }
+            return {
+                writeRoot: resolvedWorktree,
+                redirect_notice: `features-audit redirected writes to worktree ${resolvedWorktree} (--task-id ${taskId})`,
+            };
+        }
+    }
+    // Layer (3): multiple active worktree-isolated tasks AND no --task-id
+    // → actionable error. Single-worktree case is OK to default to root
+    // (the executor will set up the worktree's registry on first scan).
+    const activeWorktreeTasks = Object.entries(stateActive).filter(([_id, t]) => {
+        return (t &&
+            !TERMINAL_PHASES.has(t.lifecycle_phase) &&
+            typeof t.worktree_path === 'string' &&
+            existsSync(t.worktree_path));
+    });
+    if (!taskId && activeWorktreeTasks.length > 1) {
+        return {
+            error: {
+                kind: 'ambiguous-worktree-context',
+                message: 'ambiguous worktree context; pass --task-id <id> or --no-worktree-redirect',
+                active_worktree_tasks: activeWorktreeTasks.map(([id]) => id),
+            },
+        };
+    }
+    // Default: current behaviour (write into cwd).
+    return { writeRoot: root, redirect_notice: null };
+}
+function isWorktreeRoot(projectDir) {
+    try {
+        const dirRes = spawnSync('git', ['rev-parse', '--git-dir'], {
+            cwd: projectDir,
+            encoding: 'utf-8',
+            stdio: ['ignore', 'pipe', 'ignore'],
+        });
+        const commonRes = spawnSync('git', ['rev-parse', '--git-common-dir'], {
+            cwd: projectDir,
+            encoding: 'utf-8',
+            stdio: ['ignore', 'pipe', 'ignore'],
+        });
+        if (dirRes.status !== 0 || commonRes.status !== 0)
+            return false;
+        return (dirRes.stdout || '').trim() !== (commonRes.stdout || '').trim();
+    }
+    catch {
+        return false;
+    }
+}
+function readActiveTasks(projectDir) {
+    const statePath = join(projectDir, '.aperant', 'state.json');
+    if (!existsSync(statePath))
+        return {};
+    try {
+        const parsed = JSON.parse(readFileSync(statePath, 'utf-8'));
+        return parsed?.active_tasks ?? {};
+    }
+    catch {
+        return {};
+    }
+}
 export function cmdFeaturesAudit(projectDir, extraArgs) {
     if (!projectDir)
         return err('Usage: apt-tools features-audit <project-dir> [flags]');
     const root = resolve(projectDir);
     const flags = parseFlags(extraArgs);
+    // BUG-025b: redirect writes to the active task's worktree when the
+    // caller is in a non-worktree cwd. See resolveWriteRoot for the
+    // 4-step resolution order.
+    const taskIdFlag = flags.get('task-id');
+    const taskId = typeof taskIdFlag === 'string' && taskIdFlag.trim() ? taskIdFlag.trim() : null;
+    const noRedirect = flags.get('no-worktree-redirect') === true;
+    const writeRootResult = resolveWriteRoot({ projectDir: root, taskId, noRedirect });
+    if (writeRootResult.error) {
+        return err(writeRootResult.error.message, 1, {
+            kind: writeRootResult.error.kind,
+            active_worktree_tasks: writeRootResult.error.active_worktree_tasks,
+        });
+    }
+    const writeRoot = writeRootResult.writeRoot;
+    const redirectNotice = writeRootResult.redirect_notice;
+    if (redirectNotice) {
+        // Surface the redirect once on stderr so the executor's log carries
+        // the audit trail without polluting stdout JSON.
+        process.stderr.write(`[features-audit] ${redirectNotice}\n`);
+    }
     const diffFiles = resolveDiffFiles(root, flags);
     const applyStubs = flags.has('apply-stubs');
     const format = (flags.get('format') || 'json').toLowerCase();
-    const result = auditFeatureRegistry({ projectDir: root, diffFiles });
+    const result = auditFeatureRegistry({ projectDir: writeRoot, diffFiles });
     // Honor `.aperant/config.json.docs_policy`: only apply stubs for targets
     // whose resolved policy is `auto-update`. This closes the skill-vs-code
     // gap where `apt-execute` §3e-features promised `--apply-stubs` would
@@ -49,7 +194,9 @@ export function cmdFeaturesAudit(projectDir, extraArgs) {
             }
         }
         if (eligible.length > 0) {
-            applied_patches = applyStubPatches(root, eligible);
+            // BUG-025b: stubs are written to the resolved `writeRoot` (which
+            // may be the active task's worktree) rather than the invoking cwd.
+            applied_patches = applyStubPatches(writeRoot, eligible);
         }
         if (skipped.length > 0) {
             skipped_patches = skipped;
@@ -61,6 +208,8 @@ export function cmdFeaturesAudit(projectDir, extraArgs) {
             command: 'features-audit',
             format: 'md',
             markdown: renderMarkdown(result, applied_patches, skipped_patches),
+            write_root: writeRoot,
+            ...(redirectNotice ? { redirect_notice: redirectNotice } : {}),
             ...result,
             ...(applied_patches ? { applied_patches } : {}),
             ...(skipped_patches ? { skipped_patches } : {}),
@@ -69,6 +218,8 @@ export function cmdFeaturesAudit(projectDir, extraArgs) {
     return ok({
         status: 'ok',
         command: 'features-audit',
+        write_root: writeRoot,
+        ...(redirectNotice ? { redirect_notice: redirectNotice } : {}),
         ...result,
         ...(applied_patches ? { applied_patches } : {}),
         ...(skipped_patches ? { skipped_patches } : {}),
@@ -82,7 +233,10 @@ function resolveDiffFiles(root, flags) {
             .map((s) => s.trim())
             .filter(Boolean);
     }
-    const since = flags.get('since');
+    const sinceRaw = flags.get('since');
+    const since = typeof sinceRaw === 'string' && /^[A-Za-z0-9/_.-]+$/.test(sinceRaw) && !sinceRaw.startsWith('-')
+        ? sinceRaw
+        : null;
     try {
         const args = since ? ['diff', '--name-only', `${since}..HEAD`] : ['diff', 'HEAD', '--name-only'];
         const out = execFileSync('git', args, {

package/dist/cli/commands/features-audit.mjs.map

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package/dist/cli/commands/health-check.d.mts

@@ -1,2 +1,18 @@
+/**
+ * SECURITY: validate a component path string from `.aperant/features/*.json`
+ * before passing it to git. The registry is on-disk JSON authored by
+ * features-audit; pre-fix the orphan walker spliced this string into a
+ * shell command (`execSync(\`git rev-parse HEAD:${comp} 2>/dev/null\`)`),
+ * making a malicious entry like `foo.ts; rm -rf $HOME` a command-injection
+ * vector against any user who ran `apt-tools health-check`. The fix
+ * combines `execFileSync` (argv-form, no shell) with a strict path
+ * whitelist: relative posix paths only, no NUL / control bytes / shell
+ * metacharacters / leading `/` / `..` segments.
+ *
+ * @internal — exported for unit testing.
+ * @param {unknown} value
+ * @returns {boolean}
+ */
+export function isSafeComponentPath(value: unknown): boolean;
 export function cmdHealthCheck(projectDir: any): import("../util/result.mjs").CommandResult;
 //# sourceMappingURL=health-check.d.mts.map

package/dist/cli/commands/health-check.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"health-check.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/health-check.mjs"],"names":[],"mappings":"AAeA,4FAsJC"}
+{"version":3,"file":"health-check.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/health-check.mjs"],"names":[],"mappings":"AAeA;;;;;;;;;;;;;;GAcG;AACH,2CAHW,OAAO,GACL,OAAO,CAYnB;AAED,4FA4OC"}

package/dist/cli/commands/health-check.mjs

@@ -1,7 +1,7 @@
 /**
  * commands/health-check.mjs — health-check command (C29).
  */
-import { execSync } from 'node:child_process';
+import { execFileSync } from 'node:child_process';
 import { existsSync, readdirSync, readFileSync } from 'node:fs';
 import { dirname, join, resolve } from 'node:path';
 import { fileURLToPath } from 'node:url';
@@ -10,6 +10,37 @@ import { err, ok } from '../util/result.mjs';
 import { readSkillInstallState } from '../util/skill-installs.mjs';
 const __filename = fileURLToPath(import.meta.url);
 const __dirname = dirname(__filename);
+/**
+ * SECURITY: validate a component path string from `.aperant/features/*.json`
+ * before passing it to git. The registry is on-disk JSON authored by
+ * features-audit; pre-fix the orphan walker spliced this string into a
+ * shell command (`execSync(\`git rev-parse HEAD:${comp} 2>/dev/null\`)`),
+ * making a malicious entry like `foo.ts; rm -rf $HOME` a command-injection
+ * vector against any user who ran `apt-tools health-check`. The fix
+ * combines `execFileSync` (argv-form, no shell) with a strict path
+ * whitelist: relative posix paths only, no NUL / control bytes / shell
+ * metacharacters / leading `/` / `..` segments.
+ *
+ * @internal — exported for unit testing.
+ * @param {unknown} value
+ * @returns {boolean}
+ */
+export function isSafeComponentPath(value) {
+    if (typeof value !== 'string' || value.length === 0 || value.length > 512)
+        return false;
+    // Reject NUL, control bytes, and shell metacharacters that could escape
+    // argv interpretation if a downstream caller ever reverts to shell mode.
+    // biome-ignore lint/suspicious/noControlCharactersInRegex: rejecting control bytes IS the security guard — see isSafeComponentPath docstring + test.
+    if (/[\x00-\x1f;&|`$<>"\\]/.test(value))
+        return false;
+    if (value.startsWith('/'))
+        return false;
+    if (value.startsWith('-'))
+        return false; // would be parsed as a flag
+    if (value.split('/').some((seg) => seg === '..' || seg === '.' || seg === ''))
+        return false;
+    return true;
+}
 export function cmdHealthCheck(projectDir) {
     if (!projectDir)
         return err('Usage: apt-tools health-check <project-dir>');
@@ -19,9 +50,10 @@ export function cmdHealthCheck(projectDir) {
     // 1. Check for uncommitted changes in working tree
     let dirtyFiles = [];
     try {
-        const status = execSync('git status --porcelain 2>/dev/null', {
+        const status = execFileSync('git', ['status', '--porcelain'], {
             cwd: targetDir,
             encoding: 'utf-8',
+            stdio: ['ignore', 'pipe', 'ignore'],
         }).trim();
         if (status) {
             dirtyFiles = status.split('\n').filter(Boolean);
@@ -135,7 +167,7 @@ export function cmdHealthCheck(projectDir) {
             issues.push({
                 type: 'missing-skills',
                 severity: 'warning',
-                detail: 'No installed skill version stamps found under .claude/skills or .agents/skills',
+                detail: 'No apt install manifests or version stamps found for any supported runtime',
                 install_surfaces: installs,
             });
         }
@@ -150,6 +182,90 @@ export function cmdHealthCheck(projectDir) {
             });
         }
     }
+    // 6. BUG-025b — orphaned-feature-component warning. Walk
+    // `.aperant/features/*.json`; for each cited component path, verify
+    // `git rev-parse HEAD:<path>` succeeds on the main repo's HEAD. A path
+    // that resolves on a worktree branch but is missing on main is a
+    // candidate orphan (the registry entry leaked from a worktree-isolated
+    // task and was never followed by the actual component landing on main).
+    // Severity `warn` — the registry is best-effort metadata, not a build
+    // blocker. Only fires on the main repo (skipped when health-check is
+    // invoked from a worktree).
+    try {
+        const featuresDir = join(aperantDir, 'features');
+        if (existsSync(featuresDir)) {
+            // SECURITY: argv-form (no shell) — see isSafeComponentPath comment.
+            const dirRes = execFileSync('git', ['rev-parse', '--git-dir'], {
+                cwd: targetDir,
+                encoding: 'utf-8',
+                stdio: ['ignore', 'pipe', 'ignore'],
+            }).trim();
+            const commonRes = execFileSync('git', ['rev-parse', '--git-common-dir'], {
+                cwd: targetDir,
+                encoding: 'utf-8',
+                stdio: ['ignore', 'pipe', 'ignore'],
+            }).trim();
+            if (dirRes === commonRes) {
+                const orphans = [];
+                // PRF-001: one subprocess total instead of one per component.
+                // Build a Set of all tracked paths from a single ls-tree call.
+                const lsOut = execFileSync('git', ['ls-tree', '-r', 'HEAD', '--name-only'], {
+                    cwd: targetDir,
+                    encoding: 'utf-8',
+                    stdio: ['ignore', 'pipe', 'ignore'],
+                }).trim();
+                const trackedPaths = new Set(lsOut
+                    .split('\n')
+                    .map((s) => s.trim())
+                    .filter(Boolean));
+                const files = readdirSync(featuresDir).filter((f) => f.endsWith('.json') && f !== 'REGISTRY.md');
+                // QUA-006: cap total component iterations to guard against
+                // adversarially large or malformed registry files.
+                const MAX_ORPHAN_ITERATIONS = 10_000;
+                let iterCount = 0;
+                let cappedAt = null;
+                outer: for (const f of files) {
+                    let area;
+                    try {
+                        area = JSON.parse(readFileSync(join(featuresDir, f), 'utf-8'));
+                    }
+                    catch {
+                        continue;
+                    }
+                    const components = Array.isArray(area?.components) ? area.components : [];
+                    for (const comp of components) {
+                        if (iterCount >= MAX_ORPHAN_ITERATIONS) {
+                            cappedAt = f;
+                            break outer;
+                        }
+                        iterCount++;
+                        // SECURITY: reject obviously-unsafe component strings.
+                        if (!isSafeComponentPath(comp))
+                            continue;
+                        if (!trackedPaths.has(comp))
+                            orphans.push({ area_file: f, component: comp });
+                    }
+                }
+                if (cappedAt !== null) {
+                    orphans.push({
+                        area_file: cappedAt,
+                        component: `(orphan scan capped at ${MAX_ORPHAN_ITERATIONS} entries — remaining components skipped)`,
+                    });
+                }
+                if (orphans.length > 0) {
+                    issues.push({
+                        type: 'orphan-feature-components',
+                        severity: 'warning',
+                        detail: `${orphans.length} feature component(s) cited in .aperant/features/*.json are missing on HEAD — candidates leaked from worktree-isolated tasks`,
+                        orphans: orphans.slice(0, 20),
+                    });
+                }
+            }
+        }
+    }
+    catch {
+        /* git not available or worktree — skip silently */
+    }
     return ok({
         status: 'ok',
         command: 'health-check',

package/dist/cli/commands/health-check.mjs.map

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package/dist/cli/commands/init.d.mts

@@ -21,8 +21,15 @@
  * additive: callers without the flag still get the no-op short-circuit
  * (preserves `init-upgrade-drift.test.ts` case (a)).
  *
+ * 0.7.0 — `--force-overwrite-catalog` (FRAMEWORK-BUG-023) bypasses the
+ * foreign-row defensive check in `injectInstructionFile`. Power-user
+ * flag only — no interview prompt. Without it, an instruction file
+ * carrying rows the generator didn't produce causes init to exit 2 with
+ * `code: 'instruction-file.foreign-rows'` so unattended upgrade flows
+ * surface the would-be data loss instead of silently clobbering it.
+ *
  * @param {string[]} args
- * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean, forceRuntimes: boolean }}
+ * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean, forceRuntimes: boolean, forceOverwriteCatalog: boolean, keepLegacy: boolean }}
  */
 export function parseInstallFlags(args: string[]): {
     runtimes: string[];
@@ -35,7 +42,18 @@ export function parseInstallFlags(args: string[]): {
     accept_new_defaults: boolean;
     yes: boolean;
     forceRuntimes: boolean;
+    forceOverwriteCatalog: boolean;
+    keepLegacy: boolean;
 };
+/**
+ * Patch the template config in place with the interview answers. Leaves
+ * every key the user did NOT touch at its template default so the shape
+ * matches `/apt:setup`'s review-mode expectations.
+ *
+ * @param {Record<string, any>} config
+ * @param {InstallAnswers} answers
+ */
+export function applyInterviewAnswers(config: Record<string, any>, answers: InstallAnswers, targetDir?: null): void;
 /**
  * Main entry — invoked from bin/apt-tools.mjs.
  *

package/dist/cli/commands/init.d.mts.map

@@ -1 +1 @@
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