@aperant/framework 0.6.6 → 0.6.7

package/CHANGELOG.md

@@ -3,6 +3,161 @@
 All notable changes to `@aperant/framework` are documented here. See
 [`VERSIONING.md`](VERSIONING.md) for the per-tier contract.
 
+## [Unreleased]
+
+### persona-aware release-notes system (task persona-aware-changelog-and-release-note_16-05-26)
+
+Two-skill split: `/apt:docs changelog` keeps the dev-flavored
+`CHANGELOG.md` surface unchanged; a new opt-in `/apt:release-notes`
+skill ships a persona-aware user-facing artifact. Schema bumps
+`.aperant/config.json` v4 → v5 with a new `changelog.{dev,release_notes}`
+block (default-OFF release-notes, dev-changelog stays default-ON).
+
+- **New skill** `/apt:release-notes` (`stage: ops`, `intent: capture`,
+  `task_context: none`). Three modes — `draft --pr <n>` for towncrier-
+  style per-PR fragments, `compile <tag>` for tag-time narrative + the
+  non-negotiable `## Needs Triage` bucket (spec ID-6: never silent-drop
+  unmapped fragments), `publish <tag>` for `gh release create/edit`
+  with a graceful `{status: 'skipped', reason: 'gh-not-found'}`
+  envelope when `gh` is missing. DEEP-track-only — Fast Path Guarantee
+  pinned by `apt-release-notes-quick-exempt.test.ts`.
+- **New CLI verb** `apt-tools release-notes <draft|compile|publish>`.
+  Deterministic I/O only — no LLM in the CLI, no prompt templates.
+  Persona-voice tuning lives in the SKILL.md via the
+  `appendices/persona-voice.md` posture loader.
+- **Schema v4 → v5.** `packages/framework/templates/config.json` gains
+  the `changelog` block; the existing
+  `runMigrationsAgainstTemplate()` path silently auto-adds the new
+  block to any v4 config via the `auto_added` bucket. No bespoke
+  migration code, no destructive paths — TD-1 pins the safety net.
+- **Setup integration.** `/apt:setup` gains Batch 9 (Changelog & Release
+  Notes) with two top-level questions + an audience / persona-filter
+  sub-picker under Q2=Yes. Per-project opt-in is explicit; presence of
+  `.aperant/personas.json` does NOT auto-enable (spec ID-7).
+- **Ship integration.** `/apt:ship` §2.6 runs only when opted in.
+  Feature-registry diff → persona mapping → `Release note: …`
+  auto-draft in the PR body. When `require_pr_field=true` (default)
+  AND auto-draft fails, ship emits the exact error string `[APT] No
+  release-note signal found — author manual note in PR body or label
+  PR no-notes` and stops before `gh pr create`.
+- **Close-task integration.** `/apt:close-task` §2.6 drops the
+  per-PR fragment on merge via the same idempotent `apt-tools
+  release-notes draft` verb. Failure is additive bookkeeping (appends
+  to `pending_release_note[]` in state.json) — never blocks close.
+- **Tests.** TD-1 schema migration, TD-2 fragment idempotency, TD-3
+  compile + triage bucket, TD-4 ship-autodraft decision matrix, TD-5
+  end-to-end opt-in flow (mocked `gh`), TD-6 quick-exempt regression.
+  32 cases across 6 release-notes test files.
+
+The framework's own `CHANGELOG.md` stays dev-flavored — Aperant ships
+to developers, so this file is the right audience already. The
+user-facing surface that this work introduces is for projects that
+ship to non-developer humans.
+
+## 0.6.7 — 2026-05-16 — /apt:update pipeline fixes (Codex spar) + framework-bug bundle
+
+### /apt:update pipeline (Codex spar 2026-05-15)
+
+Three line-cited defects from a 2026-05-15 Codex adversarial spar made
+`/apt:update` silently a no-op on a real version bump (e.g. 0.6.5 →
+0.6.7). All three are now fixed and proved by a new end-to-end test.
+
+- **Bug 1: `check-version` was npm-blind.** `src/cli/commands/check-version.mjs:80-82`
+  previously read `framework_version` from the local kernel's own
+  `package.json` and hard-coded `update_available:false` per runtime
+  (lines 59, 70). The skill's `<context>` block documented fields like
+  `framework.latest_version` + `update_available` + `dev_install_ahead`
+  that `check-version` never emitted — those fields lived only in the
+  SessionStart worker's cache file (`hooks/apt-check-update-worker.js`
+  at `~/.cache/aperant/apt-update-check.json`). **Fix:** `check-version`
+  now reads that cache file when it exists and is fresh (< 1 h,
+  `schema_version=1`) and merges `framework.latest_version`,
+  `update_available`, `dev_install_ahead`, `not_published`,
+  `stale_files_total`, `lookup_error` into its envelope. On a stale or
+  missing cache the same field names are emitted with null/false/0
+  sentinel values so the skill's parser stays single-shape (ID-03).
+  Bails out on any non-1 `schema_version` (R2 mitigation against
+  future cache schema drift).
+- **Bug 2: `init` upgrade no-op ignored runtime-manifest drift.**
+  `src/cli/commands/init.mjs:354-370` decided `upgrade_noop` solely on
+  `.aperant/config.json` schema drift, and lines `1064-1078` returned
+  `status:up_to_date` BEFORE `installRuntimes` ran. Reproduction:
+  deleting `.claude/apt-file-manifest.json` and re-running init still
+  returned `up_to_date` with the manifest unrestored. **Fix:** new
+  `--force-runtimes` flag on `init`. When set AND `upgrade_noop` would
+  fire, the cmdInit synthesizes a real `InstallAnswers` shape from the
+  existing config (preserving visibility/autonomy/cross-verification)
+  and falls through to `installRuntimes` + `runKernelInstall` +
+  `finishInit` as on the upgrade-with-drift path. The flag is strictly
+  additive — callers without it keep the existing no-op short-circuit
+  (preserves `init-upgrade-drift.test.ts` case (a) — verified by 27
+  passing tests across `init-upgrade-drift.test.ts` and
+  `init-flag-parser.test.ts`).
+- **Bug 3: skill read fields `check-version` didn't emit.**
+  `skills/apt-update/SKILL.md:49-54` parsed `framework.installed_version`,
+  `framework.latest_version`, `stale_files_total`, `update_available`,
+  `dev_install_ahead`, `not_published` — none of which the CLI emitted.
+  **Fix:** Bug 1's fix lights up the fields the skill was already
+  reading; the SKILL.md prose is rewritten to also document a new
+  Step 1.5 (`npm view @aperant/framework version` + `npm install
+  --prefix .aperant/deps @aperant/framework@<latest>` when newer, with
+  10 s npm timeout per ID-04) and to pass `--force-runtimes` in Step 3.
+  Added a `TODO(followup)` comment near the hardcoded
+  `.aperant/deps/...` path so the PATH-only / npx-only install case is
+  tracked but explicitly deferred (ID-05).
+
+- **Schema status.** Envelope changes are strictly additive — the new
+  `framework`, `update_available`, `dev_install_ahead`, `not_published`,
+  `stale_files_total`, `lookup_error` fields are all nullable; existing
+  callers ignore unknown fields. `--force-runtimes` is opt-in. No
+  `schema_version` bump required.
+- **Decision source.** Codex spar 2026-05-15.
+- **Tests.** New: `check-version-cache-merge.test.ts` (6 cases),
+  `init-force-runtimes.test.ts` (3 cases),
+  `update-pipeline-bump-e2e.test.ts` (2 cases). Existing:
+  `init-upgrade-drift.test.ts` case (a) still green —
+  `--force-runtimes` is opt-in, not a behavior change. Manual smoke
+  test (kernel binary upgrades in place via `npm install --prefix`) is
+  deferred to release-time validation; the e2e test scopes to
+  cache-merge + force-runtimes composition.
+
+`task: fix-apt-update-pipeline-3-bugs_15-05-26`
+
+### Other framework-bug fixes shipped in this release (rolled up from previous unreleased)
+
+- **fix:** ship gate `review-clean` and `parse-review` now accept `fixed:true`
+  alongside `resolved:true` as resolution markers
+  ([FRAMEWORK-BUG-009](../../docs/frameworks/spec-gaps.md#framework-bug-009-review-clean-fixed-key)).
+  The reviewer skill writes `fixed:true` paired with `fix_commit` — the gate
+  and consistency normalizer previously only recognized `resolved:true`,
+  causing false-positive blocks when a review fixed findings in-loop.
+- **fix:** `apt-tools ci-watch tick --payload-file <path>` lets the
+  orchestrator skill pass pre-captured `gh pr checks` + `gh pr view`
+  payloads directly to the cmd, closing the production-path gap
+  ([FRAMEWORK-BUG-010](../../docs/frameworks/spec-gaps.md#framework-bug-010-ci-watch-payload-file)).
+  The cmd still does NOT shell out to gh — that boundary stays with the
+  orchestrator.
+- **feat:** new `loadMergedProjectConfig` deep-merge reader in
+  `src/cli/config/load.mjs` for per-user overrides via
+  `.aperant/config.local.json` (gitignored). `diagram.mcpConsent` migrated
+  to `config.local.json` to close a per-user consent-leak surface
+  ([FRAMEWORK-AUDIT-001](../../docs/frameworks/spec-gaps.md#framework-audit-001-config-local-json-migration)).
+  Five additional per-user candidates documented and deferred per a recorded
+  Codex spar round (cede-partial outcome).
+- **blocked:** FRAMEWORK-BUG-011 (vitest `NODE_ENV='test'` workaround
+  location). Spec proposed moving the env override from `vitest.config.ts`
+  to `vitest.setup.ts`; empirical regression in `use-analytics.test.ts`
+  (`ERR_UNKNOWN_BUILTIN_MODULE: No such built-in module: node:`) disproved
+  the hypothesis. See
+  [FRAMEWORK-BUG-011](../../docs/frameworks/spec-gaps.md#framework-bug-011-vitest-node-env-workaround)
+  for follow-up options.
+
+### apt:setup onboarding-marker (rolled up from PR #137)
+
+- **fix:** fresh installs now walk the full Batch 1-8 onboarding flow
+  via an explicit onboarding marker, replacing the previous heuristic
+  that short-circuited on the presence of any `.aperant/` content.
+
 ## 0.6.5 — 2026-05-14 — Drop aggregate envelope cap
 
 Replaces the aggregate `ENVELOPE_MAX_BYTES` cap in

package/dist/cli/commands/check-version.d.mts.map

@@ -1 +1 @@
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+{"version":3,"file":"check-version.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/check-version.mjs"],"names":[],"mappings":"AAqGA;;GAEG;AACH,4CAFW,MAAM,8CAsFhB"}

package/dist/cli/commands/check-version.mjs

@@ -16,7 +16,26 @@
  *       stale_files: [{ path, reason }],
  *       update_available: false
  *     }],
- *     legacy_install: false   // true when only the old .apt-version exists
+ *     legacy_install: false,  // true when only the old .apt-version exists
+ *     // === 0.6.7 cache-merge fields (Bug 1 fix) ===
+ *     // Merged from the SessionStart worker's cache at
+ *     // ~/.cache/aperant/apt-update-check.json when fresh (< 1 h,
+ *     // schema_version=1). When stale, missing, or malformed, the same
+ *     // field names are present with null/false/0 sentinel values so
+ *     // the skill's parser stays single-shape.
+ *     //
+ *     // Note: framework.installed_version is intentionally absent.
+ *     // The live kernel version is always in the top-level
+ *     // `framework_version` field (read from package.json, never from
+ *     // the cache).
+ *     framework: {
+ *       latest_version: '0.6.7' | null
+ *     },
+ *     update_available: false,
+ *     dev_install_ahead: false,
+ *     not_published: false,
+ *     stale_files_total: 0,
+ *     lookup_error: null
  *   }
  *
  * Per-file `reason` values:
@@ -30,6 +49,7 @@ import { dirname, join, resolve } from 'node:path';
 import { fileURLToPath } from 'node:url';
 import { readManifest } from '../install/manifest.mjs';
 import { detectInstalledRuntimes } from '../install/runtime-detect.mjs';
+import { readFreshUpdateCache } from '../install/update-chips.mjs';
 import { inspectManifestFiles } from '../install/version-header.mjs';
 import { err, ok } from '../util/result.mjs';
 const __filename = fileURLToPath(import.meta.url);
@@ -53,6 +73,10 @@ function inspectRuntime(targetDir, descriptor) {
             runtime: descriptor.id,
             installed_version: null,
             stale_files: [],
+            // 0.6.7 — per-runtime `update_available` is retained as `false` for
+            // backward shape compatibility with pre-0.6.7 callers. The real
+            // npm-bump signal now lives on the TOP-LEVEL `update_available`
+            // field (merged from the SessionStart worker's cache below).
             update_available: false,
         };
     }
@@ -64,9 +88,12 @@ function inspectRuntime(targetDir, descriptor) {
         runtime: descriptor.id,
         installed_version: manifest.framework_version,
         stale_files: stale,
+        // See note above — top-level `update_available` carries the real signal.
         update_available: false,
     };
 }
+/** Cache freshness window — 1 hour, matches the worker's CACHE_TTL_MS. */
+const CACHE_TTL_MS = 60 * 60 * 1_000;
 /**
  * @param {string} projectDir
  */
@@ -98,6 +125,43 @@ export function cmdCheckVersion(projectDir) {
     else if (runtimes.length > 0) {
         messageParts.push(`Skills are up to date for ${runtimes.length} runtime(s).`);
     }
+    // 0.6.7 (Bug 1 fix) — merge the SessionStart worker's cache fields when
+    // the cache file is fresh (< 1 h, schema_version=1). On a stale / missing
+    // / malformed cache the same field names are emitted with null/false/0
+    // sentinel values so the skill's parser stays single-shape (ID-03).
+    //
+    // LOG-001: stale_files_total is always derived from the live per-runtime
+    // walk (totalStale). The cache value is intentionally NOT merged — it is
+    // up to 1 h old and would hide drift that occurred since the last worker
+    // run.
+    //
+    // LOG-002: installed_version always comes from the kernel's own
+    // package.json (frameworkVersion). The cache's installed_version is
+    // stale by definition and is NOT merged into the envelope. Consumers
+    // that need the live kernel version use the top-level `framework_version`
+    // field, which is identical.
+    const cacheResult = readFreshUpdateCache(CACHE_TTL_MS);
+    let latestVersion = null;
+    let updateAvailable = false;
+    let devInstallAhead = false;
+    let notPublished = false;
+    let lookupError = null;
+    if (cacheResult.fresh) {
+        const c = cacheResult.cache;
+        const fw = c.framework && typeof c.framework === 'object' ? c.framework : {};
+        // latest_version is semver-validated inside readFreshUpdateCache (SEC-001).
+        if (typeof fw.latest_version === 'string')
+            latestVersion = fw.latest_version;
+        if (typeof c.update_available === 'boolean')
+            updateAvailable = c.update_available;
+        if (typeof c.dev_install_ahead === 'boolean')
+            devInstallAhead = c.dev_install_ahead;
+        if (typeof c.not_published === 'boolean')
+            notPublished = c.not_published;
+        // stale_files_total intentionally NOT taken from cache (LOG-001).
+        if (typeof c.lookup_error === 'string')
+            lookupError = c.lookup_error;
+    }
     return ok({
         status,
         command: 'check-version',
@@ -105,6 +169,17 @@ export function cmdCheckVersion(projectDir) {
         runtimes,
         legacy_install: legacyInstall,
         message: messageParts.join(' '),
+        // Cache-merge fields (additive, nullable). Documented in the
+        // file-header schema comment.
+        framework: {
+            latest_version: latestVersion,
+        },
+        update_available: updateAvailable,
+        dev_install_ahead: devInstallAhead,
+        not_published: notPublished,
+        // stale_files_total: always the live sum from per-runtime walks (LOG-001).
+        stale_files_total: totalStale,
+        lookup_error: lookupError,
     });
 }
 //# sourceMappingURL=check-version.mjs.map

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@@ -1 +1 @@
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package/dist/cli/commands/ci-watch.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"ci-watch.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/ci-watch.mjs"],"names":[],"mappings":"AA8DA;;;;GAIG;AACH,uCAJW,MAAM,cACN,MAAM,aACN,MAAM,EAAE,8CAyBlB"}
+{"version":3,"file":"ci-watch.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/ci-watch.mjs"],"names":[],"mappings":"AAoEA;;;;GAIG;AACH,uCAJW,MAAM,cACN,MAAM,aACN,MAAM,EAAE,8CAyBlB"}

package/dist/cli/commands/ci-watch.mjs

@@ -16,6 +16,12 @@
  * reads the gh payload from that file instead of shelling out. The stub
  * shape is `{ checks: [...], prMetadata: {...} }` — matches the classifier
  * input contract in stop-matrix.mjs.
+ *
+ * Production seam: when `--payload-file <path>` is passed, the tick path
+ * reads the gh payload from that file. Same shape as the stub. The
+ * orchestrator skill (apt-watch-ci §3) captures `gh pr checks ...` +
+ * `gh pr view ...` into the payload file BEFORE invoking the cmd — the cmd
+ * itself never shells out to gh.
  */
 import { randomBytes } from 'node:crypto';
 import { existsSync, readFileSync } from 'node:fs';
@@ -262,7 +268,8 @@ function doTick(root, flags) {
                 reason: 'watch is paused (reviewer-pause); resume with /apt:watch-ci --resume',
             });
         }
-        const payload = fetchGhPayload(pr);
+        const payloadFile = flags.get('payload-file');
+        const payload = payloadFile ? loadPayloadFile(resolve(root, payloadFile)) : fetchGhPayload(pr);
         if (payload.error) {
             // gh CLI not available / auth failed → infra-backoff. Don't count it,
             // double the next-tick interval (capped at MAX_TICK_INTERVAL_MS), and reschedule.
@@ -440,12 +447,35 @@ function fetchGhPayload(_pr) {
     // Real gh shell-out lives in the skill body. The cmd's tick treats
     // "no stub + no payload" as infra-backoff so unit tests can exercise the
     // path without a live gh binary. The orchestrator skill is responsible
-    // for pre-fetching and re-invoking with APT_TEST_GH_STUB set, OR for
-    // passing real data via a future --payload-file flag (out of scope here).
+    // for pre-fetching and re-invoking with APT_TEST_GH_STUB set (tests) OR
+    // `--payload-file <path>` (production — see loadPayloadFile below).
     return {
-        error: 'gh shell-out is the skill orchestrator boundary — set APT_TEST_GH_STUB for unit tests',
+        error: 'gh shell-out is the skill orchestrator boundary — set APT_TEST_GH_STUB for unit tests or pass --payload-file for production',
     };
 }
+/**
+ * Read a gh payload from disk for the production path (FRAMEWORK-BUG-010).
+ * Returns the same shape as fetchGhPayload's stub branch on success, or an
+ * { error } envelope on missing path / parse failure — the existing
+ * infra-backoff branch surfaces the error cleanly.
+ *
+ * @param {string} path absolute or already-resolved path
+ */
+function loadPayloadFile(path) {
+    try {
+        if (!existsSync(path)) {
+            return { error: `payload-file path not found: ${path}` };
+        }
+        const data = JSON.parse(readFileSync(path, 'utf-8'));
+        return {
+            checks: data.checks || [],
+            prMetadata: data.prMetadata || { state: 'OPEN' },
+        };
+    }
+    catch (e) {
+        return { error: `payload-file parse error: ${e.message}` };
+    }
+}
 /**
  * Read `ci_watch.auto_merge_on_green` from `.aperant/config.json` (default
  * false). Best-effort — missing file or unparsable JSON returns false.

package/dist/cli/commands/ci-watch.mjs.map

@@ -1 +1 @@
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package/dist/cli/commands/init.d.mts

@@ -15,8 +15,14 @@
  * a missing runtimes flag should block (no flag, no `--yes`) or not
  * (flag passed, or `--yes`).
  *
+ * 0.6.7 — `--force-runtimes` (Bug 2 fix) bypasses the `upgrade_noop`
+ * short-circuit so `/apt:update` can re-stamp runtime manifests even
+ * when `.aperant/config.json` is at the current schema. Strictly
+ * additive: callers without the flag still get the no-op short-circuit
+ * (preserves `init-upgrade-drift.test.ts` case (a)).
+ *
  * @param {string[]} args
- * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean }}
+ * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean, forceRuntimes: boolean }}
  */
 export function parseInstallFlags(args: string[]): {
     runtimes: string[];
@@ -28,6 +34,7 @@ export function parseInstallFlags(args: string[]): {
     autonomy?: 0 | 1 | 2 | 3;
     accept_new_defaults: boolean;
     yes: boolean;
+    forceRuntimes: boolean;
 };
 /**
  * Main entry — invoked from bin/apt-tools.mjs.

package/dist/cli/commands/init.d.mts.map

@@ -1 +1 @@
-{"version":3,"file":"init.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/init.mjs"],"names":[],"mappings":"AAmEA;;;;;;;;;;;;;;;;;;;GAmBG;AACH,wCAHW,MAAM,EAAE,GACN;IAAE,QAAQ,EAAE,MAAM,EAAE,CAAC;IAAC,iBAAiB,EAAE,OAAO,CAAC;IAAC,MAAM,EAAE,MAAM,GAAC,IAAI,CAAC;IAAC,WAAW,EAAE,OAAO,CAAC;IAAC,aAAa,EAAE,OAAO,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,GAAC,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC,CAAC;IAAC,mBAAmB,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,OAAO,CAAA;CAAE,CAgD7N;AA40BD;;;;;;GAMG;AACH,oCAJW,MAAM,cACN,MAAM,EAAE,GACN,OAAO,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CAiI3D;;;;;cA98Ba,MAAM,EAAE;;;;qBACR,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC;;;;gBACP,MAAM,GAAC,MAAM;;;;4BACb,MAAM,EAAE;;;;aACR,OAAO;;;;mBACP,OAAO;eACP,OAAO,0BAA0B,EAAE,eAAe;;;;;;;;;aAErC,MAAM;eAAS,OAAO;cAAQ,MAAM;iBAAW,MAAM;;;;;;aAErD,MAAM;eAAS,OAAO;gBAAU,MAAM;;;;;;kBAEvC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;0BAAoB,OAAO,EAAE;2BAAqB,OAAO,EAAE;oBAAc,OAAO,EAAE"}
+{"version":3,"file":"init.d.mts","sourceRoot":"","sources":["../../../src/cli/commands/init.mjs"],"names":[],"mappings":"AAmEA;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AACH,wCAHW,MAAM,EAAE,GACN;IAAE,QAAQ,EAAE,MAAM,EAAE,CAAC;IAAC,iBAAiB,EAAE,OAAO,CAAC;IAAC,MAAM,EAAE,MAAM,GAAC,IAAI,CAAC;IAAC,WAAW,EAAE,OAAO,CAAC;IAAC,aAAa,EAAE,OAAO,CAAC;IAAC,UAAU,CAAC,EAAE,MAAM,GAAC,MAAM,CAAC;IAAC,QAAQ,CAAC,EAAE,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC,CAAC;IAAC,mBAAmB,EAAE,OAAO,CAAC;IAAC,GAAG,EAAE,OAAO,CAAC;IAAC,aAAa,EAAE,OAAO,CAAA;CAAE,CAoDrP;AA23BD;;;;;;GAMG;AACH,oCAJW,MAAM,cACN,MAAM,EAAE,GACN,OAAO,CAAC;IAAE,QAAQ,EAAE,MAAM,CAAC;IAAC,QAAQ,EAAE,MAAM,CAAA;CAAE,CAAC,CAoK3D;;;;;cAhiCa,MAAM,EAAE;;;;qBACR,CAAC,GAAC,CAAC,GAAC,CAAC,GAAC,CAAC;;;;gBACP,MAAM,GAAC,MAAM;;;;4BACb,MAAM,EAAE;;;;aACR,OAAO;;;;mBACP,OAAO;eACP,OAAO,0BAA0B,EAAE,eAAe;;;;;;;;;aAErC,MAAM;eAAS,OAAO;cAAQ,MAAM;iBAAW,MAAM;;;;;;aAErD,MAAM;eAAS,OAAO;gBAAU,MAAM;;;;;;kBAEvC,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC;0BAAoB,OAAO,EAAE;2BAAqB,OAAO,EAAE;oBAAc,OAAO,EAAE"}

package/dist/cli/commands/init.mjs

@@ -60,8 +60,14 @@ const TRANSFORM_LOADERS = new Map(RUNTIMES.map((r) => [r.id, () => import(`../in
  * a missing runtimes flag should block (no flag, no `--yes`) or not
  * (flag passed, or `--yes`).
  *
+ * 0.6.7 — `--force-runtimes` (Bug 2 fix) bypasses the `upgrade_noop`
+ * short-circuit so `/apt:update` can re-stamp runtime manifests even
+ * when `.aperant/config.json` is at the current schema. Strictly
+ * additive: callers without the flag still get the no-op short-circuit
+ * (preserves `init-upgrade-drift.test.ts` case (a)).
+ *
  * @param {string[]} args
- * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean }}
+ * @returns {{ runtimes: string[], runtimes_explicit: boolean, target: string|null, interactive: boolean, skipBootstrap: boolean, visibility?: 'solo'|'team', autonomy?: 0|1|2|3, accept_new_defaults: boolean, yes: boolean, forceRuntimes: boolean }}
  */
 export function parseInstallFlags(args) {
     const flagSet = new Set(args.filter((a) => a.startsWith('--')));
@@ -74,10 +80,14 @@ export function parseInstallFlags(args) {
     // C47 D-04 — opt out of the PROJECT.md auto-chain. Forwarded as
     // `answers.skipBootstrap` into both interview paths.
     const skipBootstrap = flagSet.has('--skip-bootstrap');
+    // 0.6.7 (Bug 2 fix) — opt-in bypass of the upgrade_noop short-circuit
+    // so /apt:update can re-stamp runtime files on a no-drift upgrade.
+    const forceRuntimes = flagSet.has('--force-runtimes');
     const classFlags = parseClassFlags(args);
     const base = {
         target,
         skipBootstrap,
+        forceRuntimes,
         visibility: classFlags.visibility,
         autonomy: classFlags.autonomy,
         accept_new_defaults: classFlags.accept_new_defaults,
@@ -290,6 +300,31 @@ function applyCollapsedClassAToMigration(migration, collapsedEntries, source, te
         migration.migrated.version = templateVersion;
     }
 }
+/**
+ * Resolve the effective runtimes list from flags, with fallback to
+ * `suggestRuntimes` and a final fallback to `['claude']`.
+ *
+ * Shared by the `nonInteractiveAnswers` upgrade path and the
+ * `--force-runtimes` synthesis block in `cmdInit` to avoid duplication.
+ *
+ * Emits a one-line stderr warning when the final fallback fires (no
+ * explicit flags and `suggestRuntimes` returned empty) so the choice is
+ * visible without breaking automated callers.
+ *
+ * @param {string} targetDir
+ * @param {ReturnType<typeof parseInstallFlags>} parsedFlags
+ * @returns {string[]}
+ */
+function selectRuntimes(targetDir, parsedFlags) {
+    if (parsedFlags.runtimes_explicit)
+        return parsedFlags.runtimes;
+    const suggested = new Set(suggestRuntimes(targetDir));
+    if (suggested.size === 0) {
+        process.stderr.write('[apt-tools] No runtime specified and config has no suggestRuntimes; defaulting to claude.\n');
+        suggested.add('claude');
+    }
+    return [...suggested];
+}
 /**
  * Non-TTY / scripted path — derive answers from flags + sensible defaults,
  * gated by the Class A/B classifier (spec R2 + R3).
@@ -377,10 +412,7 @@ function nonInteractiveAnswers(targetDir, canonicalRoot, archetype, parsedFlags)
         const visibility = migration.migrated?.share?.visibility === 'team' ? 'team' : 'solo';
         const autonomyDefault = migration.migrated?.autonomy?.default ?? 1;
         const xverify = migration.migrated?.multi_model?.cross_verification?.tools ?? [];
-        const suggested = new Set(suggestRuntimes(targetDir));
-        if (suggested.size === 0)
-            suggested.add('claude');
-        const runtimes = parsedFlags.runtimes_explicit ? parsedFlags.runtimes : [...suggested];
+        const runtimes = selectRuntimes(targetDir, parsedFlags);
         return {
             runtimes,
             autonomyDefault,
@@ -543,6 +575,12 @@ async function interactiveInterview(targetDir, version, canonicalRoot, archetype
             migration.applied_defaults.length === 0 &&
             migration.auto_added.length === 0;
         if (noDrift) {
+            // 0.6.7 (Bug 2 fix) — `--force-runtimes` bypasses the TTY
+            // "Nothing to do." outro so the runtime walker re-stamps every
+            // manifest; cmdInit's force-runtimes synthesis path takes over.
+            if (parsedFlags.forceRuntimes) {
+                return { upgrade_noop: true, skipBootstrap, migration };
+            }
             process.stdout.write(`\n${aperantBanner(version)}\n\n`);
             clack.intro('install');
             clack.note(`Already up to date — v${version}`, 'No drift');
@@ -833,6 +871,21 @@ function applyInterviewAnswers(config, answers) {
     }
     config.project_type =
         answers.archetype.type === 'brownfield' ? 'unknown' : config.project_type || 'unknown';
+    // Onboarding marker (task 15-05-26_apt-setup-onboarding-marker-7q9c).
+    // `/apt:setup` dispatches on this marker to decide review-mode vs full
+    // Batch 1-8 flow — file existence alone cannot disambiguate "fresh seed
+    // from template" from "fully tuned by setup" because templates/config.json
+    // ships with every key populated. Only the fresh-seed branch reaches this
+    // function (finishInit:1331); the upgrade branch (finishInit:1338-1357)
+    // writes answers.migration.migrated directly and never calls
+    // applyInterviewAnswers, so legacy unmarked configs correctly stay
+    // unmarked on upgrade. --yes / --accept-new-defaults walk this same fresh
+    // path but do NOT walk Batch 1-8 questions, so completed stays false.
+    config.onboarding = {
+        completed: false,
+        seeded_from_template: true,
+        seeded_at: new Date().toISOString(),
+    };
 }
 /**
  * Read the framework version from package.json.
@@ -968,7 +1021,13 @@ export async function cmdInit(projectDir, extraArgs = []) {
         // idempotent — preserves PROJECT.md, refreshes sidecar from it).
         // In TTY mode clack already rendered "Nothing to do." to stdout,
         // so suppress the JSON envelope (matches the cancelled path).
-        if (answers?.upgrade_noop) {
+        //
+        // 0.6.7 (Bug 2 fix) — `--force-runtimes` bypasses this short-circuit
+        // so `/apt:update` can re-stamp every runtime manifest even when
+        // `.aperant/config.json` is at the current schema. We synthesize a
+        // real InstallAnswers shape from the existing config so
+        // installRuntimes + finishInit run their normal upgrade path.
+        if (answers?.upgrade_noop && !parsedFlags.forceRuntimes) {
             if (interactiveTty)
                 return rawText('', 0);
             const bootstrap = answers.skipBootstrap
@@ -984,14 +1043,37 @@ export async function cmdInit(projectDir, extraArgs = []) {
                 message: `Already up to date — v${version}`,
             });
         }
-        const results = await installRuntimes(answers.runtimes, canonicalRoot, installTarget, version);
+        // 0.6.7 (Bug 2 fix) — when forceRuntimes is set on a no-drift run,
+        // synthesize a real InstallAnswers shape from the existing config so
+        // the runtime walker re-stamps every manifest. Visibility/autonomy/
+        // cross-verification are read from answers.migration.migrated (already
+        // in memory from nonInteractiveAnswers — avoids a second config read);
+        // runtimes resolved via selectRuntimes helper shared with the upgrade path.
+        let effectiveAnswers = answers;
+        if (answers?.upgrade_noop && parsedFlags.forceRuntimes) {
+            const existing = answers.migration?.migrated || {};
+            const runtimes = selectRuntimes(installTarget, parsedFlags);
+            effectiveAnswers = {
+                runtimes,
+                autonomyDefault: existing?.autonomy?.default ?? 1,
+                visibility: existing?.share?.visibility === 'team' ? 'team' : 'solo',
+                crossVerificationTools: existing?.multi_model?.cross_verification?.tools ?? [],
+                scanNow: false,
+                skipBootstrap: answers.skipBootstrap,
+                archetype: detectArchetype(installTarget),
+                agent_runtime: detectAgentRuntime(),
+                applied_defaults: [],
+                explicit_inputs: collectExplicitInputs(parsedFlags),
+            };
+        }
+        const results = await installRuntimes(effectiveAnswers.runtimes, canonicalRoot, installTarget, version);
         // Provision the project-local kernel BEFORE finishInit runs its JSON
         // output — that way the "structure" summary can reflect the kernel
         // path. We show a spinner in TTY mode because npm install is slow.
         const kernelResult = await runKernelInstall(installTarget, version, interactiveTty);
-        const envelope = finishInit(targetDir, installTarget, canonicalRoot, version, answers.runtimes, results, answers, interactiveTty, kernelResult);
+        const envelope = finishInit(targetDir, installTarget, canonicalRoot, version, effectiveAnswers.runtimes, results, effectiveAnswers, interactiveTty, kernelResult);
         if (interactiveTty) {
-            await renderOutro(answers, results, version, kernelResult);
+            await renderOutro(effectiveAnswers, results, version, kernelResult);
             // TTY mode: envelope was persisted to disk + suppressed from stdout
             // because the clack outro already rendered the user-facing summary.
             // Return the rawText shape with empty payload so wrap() routes us