@aperant/framework 0.19.0 → 0.20.0

package/dist/types/config.d.ts.map

@@ -1 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@aperant/framework",
-  "version": "0.19.0",
+  "version": "0.20.0",
   "description": "AI coding framework — composable skills for planning, executing, verifying, and reviewing code with any LLM provider. Works as Claude Code commands, Codex tasks, or programmatically.",
   "author": "Mikalsen AI <hello@mikalsen.ai>",
   "type": "module",

package/skills/apt-close-task/SKILL.md

@@ -185,7 +185,7 @@ Flags:
 Per ledger entry `{ task_id, scope, phase_id, closed_at, pr_number }`:
 
 0. **Enumerate the ledger first.** Run `apt-tools task close-merged . --narrate-only [--task <id>]`. The envelope's `closed[]` is the read-only list of pending narration rows (each carries `narration_pending: true`); state.json is not mutated. When `closed[]` is empty, exit early with `{status: 'ok', narrated: [], skipped: [], remaining: 0}` — there is nothing to drain.
-1. Run `apt-tools features-audit . --apply-stubs --task <task_id>` so the feature registry catches whatever the closed task introduced. If the subprocess exits non-zero, skip the entry with `reason: 'features-audit-failed'` — never block narration on registry update.
+1. Run `apt-tools features-reconcile . --gc` to prune feature-registry receipts that are merged to origin/main and older than 30 days. Receipt GC is close-task's ONLY registry role — the registry WRITE happened at ship time (`/apt:ship` §0.0 materialize), so there is no post-merge registry write to drift main. If the subprocess exits non-zero, skip the entry with `reason: 'features-gc-failed'` — never block narration on registry GC.
 2. When `phase_id` is non-null, spawn `apt-team-docs-narrator` (background, fire-and-forget) using the same shape as §2.5: `subagent_type: apt-team-docs-narrator`, `run_in_background: true`, `description: Narrate shipped phase {phase_id}`, `prompt: Run in phase-ship mode with --phase {phase_id} --scope {scope}.`. When `phase_id` is null, skip the spawn with `reason: 'no-phase-id'` (quick tasks have no phase to narrate).
 3. On successful spawn (or successful no-phase skip), drain the row via `apt-tools task narration-drain . --task <task_id>` which acquires `withFileLock(state.json)` and removes the matching `pending_narration[]` entry. On spawn failure, leave the row in place with `reason: 'narrator-spawn-failed'` so the user can re-invoke.
 
@@ -198,7 +198,7 @@ Emit a summary envelope:
   "status": "ok",
   "command": "close-task-narrate-only",
   "narrated": [{ "task_id": "<id>", "phase_id": "<p|null>", "scope": "<s>" }],
-  "skipped": [{ "task_id": "<id>", "reason": "no-phase-id|features-audit-failed|narrator-spawn-failed" }],
+  "skipped": [{ "task_id": "<id>", "reason": "no-phase-id|features-gc-failed|narrator-spawn-failed" }],
   "remaining": <ledger.length>
 }
 ```

package/skills/apt-debug/SKILL.md

@@ -291,6 +291,14 @@ Document the root cause clearly:
 cd {worktree_path} && node packages/framework/bin/apt-tools.mjs commit "fix: {concise description of fix}" --files {changed-files}
 ```
 
+After the commit, emit the registry delta (one non-blocking command):
+
+```bash
+node packages/framework/bin/apt-tools.mjs features-reconcile . --draft --task-id {task-id} || true
+```
+
+Stage `.aperant/features/deltas/` with the commit; fill any `needs-disposition` field (usually `no-semantic-change` + a one-line reason).
+
 ### 6c. Update Status
 
 ```markdown

package/skills/apt-execute/SKILL.md

@@ -373,38 +373,47 @@ node packages/framework/bin/apt-tools.mjs audit pending-artifacts . --stage
 - **`unknown[]` non-empty** → HARD STOP. A path under `.aperant/` is not classified. Treat as a planner gap — the subtask touched state that the contract does not know about. Write the decision to `{task_dir}/execution-decisions.md` (decision class: `classification-gap`), then either extend `packages/framework/src/cli/artifacts/classification.mjs` inline (if the subtask already modifies framework code) or open a follow-up task (if the drift is orthogonal). Do NOT proceed to the next subtask until the envelope returns `clean`.
 - **Envelope status == `clean`** → proceed to 3e-features.
 
-### 3e-features. Features Registry Post-Step (C33)
+### 3e-features. Feature-Registry Delta Emit
 
-After the subtask commits, run `features-audit --apply-stubs` so any
-newly-added UI/core/hook/IPC file in the diff lands in
-`.aperant/features/<area>.json` automatically. The reviewer Pass 6 covers
-whatever the post-step missed; running it here closes the gap where
-executor commits introduce a new feature surface without registering it.
+After the subtask commits, emit this subtask's registry DELTA — semantic
+capture happens HERE, while the build context is still in your window.
+`/apt:ship` §0.0 materializes all pending deltas into the area JSONs +
+a receipt later; you only record what changed and what it means.
 
 ```bash
-node packages/framework/bin/apt-tools.mjs features-audit . \
-  --task-id "$TASK_ID" \
-  --diff-files "$(git diff --name-only HEAD^ HEAD | tr '\n' ',')" \
-  --apply-stubs
+node packages/framework/bin/apt-tools.mjs features-reconcile . \
+  --draft --task-id "$TASK_ID" --subtask-id "{subtask.id}"
 ```
 
+Then ENRICH the scaffold at `.aperant/features/deltas/{task-id}-{subtask.id}.json`:
+
+- Fill every `needs-disposition` files[] entry with a real disposition
+  (`upsert` | `remove` | `wiring-transition` | `no-semantic-change` — the
+  last REQUIRES a one-line `reason`). Added qualifying files MUST register
+  (added + no-semantic-change is a validation error).
+- Assign any `area: null` (the hooks/ipc/services junk drawers no longer
+  exist — pick the owning product area).
+- Replace draft upsert stubs with real feature groups: `sub_features[]`
+  entries carrying `wired` / `handler` / `test_hint` per
+  `FeatureRegistrySchema`.
+- A wired-state change is `disposition: "wiring-transition"` plus a
+  `patch-sub-feature` operation carrying `expected_from` (the prior
+  `wired` value).
+
+Stage the delta with the commit:
+`git add .aperant/features/deltas/ && git commit --amend --no-edit`.
+
 Notes:
-- `--task-id $TASK_ID` (BUG-025b) is mandatory when the executor runs
-  from the main-repo cwd instead of inside the worktree (the
-  orchestrator's common path). features-audit resolves the worktree's
-  `.aperant/features/` from the active task record and writes there,
-  preventing generated `*.json` from leaking into main. When invoked
-  from the worktree cwd directly, `--task-id` is a no-op (layer 1
-  detection short-circuits). Pass `--no-worktree-redirect` only when
-  you intentionally want to write to the invoking cwd.
-- `--apply-stubs` only runs when the matched surface's policy is
-  `auto-update` (the default for `.aperant/features/*.json`). Users who
-  opted out via `/apt:setup` Batch 7 get a no-op — the command still
-  succeeds.
-- Pre-existing flag-drift findings are never emitted here — they're the
-  reviewer's job. The post-step is append-only on internal state.
-- If the audit fails (exit code != 0), log the failure and continue; don't
-  block subtask completion on a features-registry glitch.
+- `--task-id "$TASK_ID"` (BUG-025b) redirects the delta write to the active
+  task's worktree `.aperant/features/deltas/` when you run from the
+  main-repo cwd; it is ALSO the per-writer delta filename, so it is always
+  required.
+- The write is skipped (`policy-opt-out`) when the user opted
+  `.aperant/features/*.json` out of `auto-update` via `/apt:setup` Batch 7.
+- Non-blocking: if the reconcile scaffold fails (exit code != 0), log the
+  failure and continue; don't block subtask completion on a registry
+  glitch. The ship-time `features-reconciled` gate + the always-on CI
+  check catch real gaps.
 
 ### 3e-gate. Per-Task Review Gate (R7)
 

package/skills/apt-mockup/SKILL.md

@@ -58,7 +58,7 @@ Text-first design stays in `apt:design`. This skill never edits `DESIGN.md` or `
 **Writes:**
 - `{task_dir}/mockups/iteration-NNN.html` — One file per iteration, zero-padded 3-digit (`iteration-001.html`, `iteration-002.html`, ...). Promoted from a picked variant when the first render used `--variants`.
 - `{task_dir}/mockups/iteration-NNN-variant-<letter>.html` — One per variant in a `--variants` run (letters `a..e` for `N=2..5`)
-- `{task_dir}/mockups/iteration-NNN-gallery.html` — Generated by `apt-tools variant-gallery`; iframes the N variants side-by-side with the pick command spelled out.
+- `{task_dir}/mockups/iteration-NNN-gallery.html` — Generated by `apt-tools variant-gallery`; iframes the N variants side-by-side with the pick command spelled out, and each variant card links to its full HTML file (opens in a new tab).
 - `{task_dir}/mockups/iteration-NNN-archive/` — After `--pick <letter>`, the losing variants and the gallery move here (preserved, not deleted, so the user can review what was rejected).
 - `{task_dir}/mockups/mockup_final.html` — On `--accept`, a byte-identical copy of the latest `iteration-NNN.html` so iteration history is preserved.
 - `{task_dir}/mockups/mockup_log.md` — Append-only log: one entry per turn with iteration number, mode, user prompt, and (when relevant) variant style seeds.

package/skills/apt-quick/SKILL.md

@@ -165,7 +165,7 @@ Show the affected files briefly before proceeding (5-second delay; user can inte
 Make the changes directly:
 - Follow existing code patterns and conventions
 - Keep changes minimal — solve the stated problem, nothing more
-- If touching code with tests, run the tests to make sure nothing breaks
+- If touching tested code, run those tests
 
 ## 5. Verify (Lightweight)
 
@@ -175,7 +175,7 @@ Run a quick sanity check appropriate to the change:
   pnpm typecheck 2>&1 | tail -20
   ```
 - **Config change:** Validate the config is syntactically correct
-- **Doc change:** No verification needed unless `--verify` flag is set
+- **Doc change:** none unless `--verify` is set
 - **Style change:** Run lint on changed files
 
 If visual verification is performed via MCP screenshots:
@@ -185,24 +185,26 @@ If visual verification is performed via MCP screenshots:
 If verification fails:
 - Fix the issue
 - Re-run verification
-- If stuck after 2 attempts, report the failure and let the user decide
+- If stuck after 2 attempts, report and let the user decide
 
 ## 6. Commit
 
-Create an atomic commit with a descriptive message:
+Create an atomic commit:
 
 ```bash
 git add {changed-files}
 git commit -m "{type}: {description}"
 ```
 
-Use appropriate conventional commit type:
-- `fix:` for bug fixes
-- `docs:` for documentation
-- `style:` for formatting/style
-- `chore:` for config, dependencies, maintenance
-- `refactor:` for code restructuring
-- `feat:` for small features (rare for quick tasks)
+Use a conventional commit type: `fix:` / `docs:` / `style:` / `chore:` / `refactor:` / `feat:` (rare for quick tasks).
+
+After the commit, emit the registry delta (one non-blocking command):
+
+```bash
+node packages/framework/bin/apt-tools.mjs features-reconcile . --draft --task-id {task-id} || true
+```
+
+Stage `.aperant/features/deltas/` with the commit; fill any `needs-disposition` field (usually `no-semantic-change` + a one-line reason).
 
 ## 7. Record Task
 

package/skills/apt-review/SKILL.md

@@ -146,8 +146,8 @@ AGENTS.md, READMEs, docs/**). It is **inline** in the reviewer brief — a
 grep workload that does not justify a separate agent spawn.
 
 This pass drives two CLI verbs: `apt-tools docs-audit` (external +
-internal drift detection) and `apt-tools features-audit` (registry
-coverage). Both emit JSON; the reviewer buckets by policy.
+internal drift detection) and `apt-tools features-reconcile --check`
+(registry coverage). Both emit JSON; the reviewer buckets by policy.
 
 1. Run the docs-drift audit against the task's diff:
 
@@ -159,23 +159,26 @@ coverage). Both emit JSON; the reviewer buckets by policy.
    Capture the `findings[]` (for `flag-drift` surfaces) and `patch_plan[]`
    (for `auto-update` surfaces).
 
-2. Run the features-registry audit in report-only mode:
+2. Run the features-registry reconcile check in report-only mode:
 
    ```bash
-   node packages/framework/bin/apt-tools.mjs features-audit . \
-     --since <task-base-ref> --format json
+   node packages/framework/bin/apt-tools.mjs features-reconcile . \
+     --check --warn-only --base <task-base-ref>
    ```
 
-   The executor post-step in `/apt:execute` already applies stubs for
-   `auto-update` surfaces; this run catches anything the executor missed
-   (e.g. stubs were generated but the user's policy opted out, or the
-   executor skipped the post-step on a blocked subtask).
+   The executor's `/apt:execute` §3e-features delta-emit already recorded
+   this task's registry deltas; this run catches anything the executor
+   missed (an uncovered qualifying file, a stale fingerprint after a
+   re-edit, a delta still carrying `needs-disposition`). The repair the
+   reviewer surfaces is `features-reconcile . --draft --task-id <id>`
+   (then fill dispositions) — never a hand-authored area edit.
 
 3. **Policy split — critical:**
    - **auto-update findings** are FIXED inline via the fix-review loop. The
      reviewer applies the patch via the matching `apt-tools` subcommand
-     (`features-audit --apply-stubs`, `roadmap rollup`, registry rewriter).
-     These land in iterations 1–2 of the fix loop.
+     (`features-reconcile --draft` + fill dispositions + `--write`,
+     `roadmap rollup`, registry rewriter). These land in iterations 1–2 of
+     the fix loop.
    - **flag-drift findings** are SURFACED only. They appear in
      `review_findings.md` with category `docs-drift`, severity `warning`,
      and the full shape

package/skills/apt-run/SKILL.md

@@ -30,7 +30,7 @@ Run the full Aperant pipeline: plan a task, execute all subtasks, verify the imp
 
 As of C32 the STANDARD and DEEP auto pipelines **terminate on review** (`plan → execute → verify → review`). Pass `--skip-review` to stop after verify; for trivial work the QUICK track still skips planning entirely.
 
-Pass `--full` to carry a SINGLE task all the way to **merged + green**: it extends the pipeline past review through **ship** (a PR that auto-merges to main on green — never a direct push) and **watch-CI** (arm the watcher with auto-merge so the change lands once CI passes). `--full` is a thin chain over the existing `/apt:ship` + `/apt:watch-ci` skills — it forces review ON and is hard-guarded by `autonomy.allow_yolo` plus a one-time confirm (§1a). A `/apt:run` invocation WITHOUT `--full` behaves exactly as today (terminates on review).
+Pass `--full` to carry a SINGLE task all the way to **merged + green**: it extends the pipeline past review through **ship** (a PR that auto-merges to main on green — never a direct push) and **watch-CI** (arm the watcher with auto-merge so the change lands once CI passes — the merge is performed by `/apt:watch-ci` alone, never a direct `gh pr merge`). `--full` is a thin chain over the existing `/apt:ship` + `/apt:watch-ci` skills — it forces review ON and is hard-guarded by `autonomy.allow_yolo` plus a one-time confirm (§1a). A `/apt:run` invocation WITHOUT `--full` behaves exactly as today (terminates on review).
 </objective>
 
 <your_environment>
@@ -399,7 +399,7 @@ Pipeline order note: the user's phrasing was *"review, verify"* but `/apt:run` r
 
 **Ship (Option A — PR that auto-merges to main on green; NEVER a direct push/merge):**
 
-Invoke `/apt:ship` inline. It runs its own hard-gate (verify-approved / review-clean / consistency / gitignore), opens the PR against the task's recorded `base_branch` (main for a task forked from main), and atomically flips `reviewing → shipped-pending-merge` via `task update --pr-url` — which also arms the post-ship watcher per `ci_watch.after_ship`. `--full` MUST NEVER `git push`/`git merge` directly to main (ID-02 Option B is rejected unconditionally): "ship to main" means **a PR that auto-merges to main on green**, not a force-push.
+Invoke `/apt:ship` inline. It runs its own hard-gate (verify-approved / review-clean / consistency / gitignore), opens the PR against the task's recorded `base_branch` (main for a task forked from main), and atomically flips `reviewing → shipped-pending-merge` via `task update --pr-url` — which also arms the post-ship watcher per `ci_watch.after_ship`. `--full` MUST NEVER `git push`/`git merge` directly to main (ID-02 Option B is rejected unconditionally): "ship to main" means **a PR that auto-merges to main on green**, not a force-push. The merge itself is performed EXCLUSIVELY by `/apt:watch-ci` (§6.2, ID-10) — `--full` MUST NEVER run `gh pr merge` (with or without `--auto`) nor enable GitHub native auto-merge.
 
 Capture the opened PR number `{N}` from the `/apt:ship` result for §6.2.
 
@@ -413,13 +413,19 @@ After the PR opens, force auto-merge for THIS run regardless of the config defau
 node packages/framework/bin/apt-tools.mjs ci-watch start . --pr {N} --task-id {task-id} --host {cli} --auto-merge-on-green
 ```
 
+> **ID-10 — `/apt:watch-ci` is the SOLE merge authority (hard guardrail).**
+> The auto-merge is performed EXCLUSIVELY by `/apt:watch-ci`: its §4 green branch runs a plain `gh pr merge {N} --squash` — NEVER `--auto` — only after its `allGreen` classifier confirms every check is terminal-green.
+> `--full` (and `/apt:ship`) MUST NEVER itself run `gh pr merge` — with or without `--auto`/`--squash` — nor enable GitHub native auto-merge.
+> Rationale: this repo has no required status checks, so `gh pr merge --auto` degrades to an immediate merge — it would land the PR before CI can turn it red (the exact bug this guardrail prevents).
+> After ship, the ONLY merge-capable dispatch is invoking `/apt:watch-ci --tick --pr {N}` (below) and letting the watcher decide; you do NOT merge here.
+
 **Branch on host cron capability.** Run host-detect and read `host_capabilities.cron`:
 
 ```bash
 node packages/framework/bin/apt-tools.mjs host-detect .
 ```
 
-- **cron-capable host** (e.g. Claude Code, `cron: true`): the watcher is armed with auto-merge ON; register the recurring tick via the host's `CronCreate` (per `/apt:watch-ci` §3). Then **EXIT — do NOT loop** (respect `/apt:watch-ci`'s single-execution-per-invocation contract). The cron beat drives the watcher to merged + green unattended. Report: watcher armed, auto-merge ON, and the deadline.
+- **cron-capable host** (e.g. Claude Code, `cron: true`): the watcher is armed with auto-merge ON; hand the merge to `/apt:watch-ci` — register a recurring `CronCreate` whose payload is `/apt:watch-ci --tick --pr {N}` (per `/apt:watch-ci` §3), then invoke `/apt:watch-ci --tick --pr {N}` once now to run the first (still-waiting) tick. Then **EXIT — do NOT loop** (respect `/apt:watch-ci`'s single-execution-per-invocation contract). The cron beat drives `/apt:watch-ci` to merged + green unattended, and its §4 green branch performs the green-gated squash-merge — you never merge from here. Report: watcher armed, auto-merge ON, and the deadline.
 - **non-cron host** (Codex / Gemini / OpenCode): truly-unattended watching is impossible. Arm the watch state + auto-merge (the `ci-watch start --auto-merge-on-green` above) but do NOT impersonate a scheduler — NEVER fake a `while` / `sleep` loop. Print the honest manual-tick instruction:
 
   ```

package/skills/apt-ship/SKILL.md

@@ -24,6 +24,7 @@ gates:
   - consistency-check
   - r-persona-alignment
   - gitignore-in-sync
+  - features-reconciled
 config_keys:
   - pipeline.auto_branch
   - pipeline.branch_prefix
@@ -54,6 +55,27 @@ Create a pull request (or publish a package) with full traceability from decisio
 
 <process>
 
+## 0.0 Materialize feature-registry deltas
+
+BEFORE the hard-gate check runs (write-then-verify: the `features-reconciled` gate in Section 0 verifies what this step wrote), materialize any pending feature-registry deltas into the area JSONs + a durable receipt:
+
+```bash
+ship_cwd=$(node packages/framework/bin/apt-tools.mjs task get . --id {task-id} | jq -r '.task.worktree_path // empty')
+ship_cwd=${ship_cwd:-.}
+node packages/framework/bin/apt-tools.mjs features-reconcile "$ship_cwd" --write --task-id {task-id}
+```
+
+Handle the envelope:
+
+- **`status: "ok"` with writes** (`materialized > 0` or a non-empty `changed_paths`): the write already self-staged its committable outputs (areas + receipt + REGISTRY.md + deleted delta paths). Commit them in `ship_cwd`:
+  ```bash
+  git -C "$ship_cwd" commit -m "chore(aperant): materialize feature-registry deltas"
+  ```
+  (Skip the commit when nothing was staged — a zero-delta write only regenerates REGISTRY.md when it drifted.)
+- **`status: "skip"` (`reason: "policy-opt-out"`)**: proceed — the `features-reconciled` gate reports `skip` for the same reason.
+- **`status: "error"` with `kind: "hard-conflict"`**: STOP. Print the conflict report verbatim (it names BOTH writer delta files). The repair is `features-reconcile "$ship_cwd" --draft --task-id {task-id}` plus hand-fixing the conflicting operations — NEVER `--force` around this stop.
+- **`status: "error"` with `kind: "invalid-deltas"`**: STOP and report — a pending delta still carries `needs-disposition` (or another validation failure); fill the dispositions and re-run.
+
 ## 0. Hard Gate Check
 
 Before gathering context or building any PR artifacts, run the hard-gate check for the `ship` skill:
@@ -72,7 +94,7 @@ Parse the JSON envelope:
   ```
   Exit the skill. Do NOT auto-apply `--force` — force is an explicit human decision.
 
-The ship gate covers constitution-read, verify-approved (qa_signoff.json verdict), review-clean (no unresolved critical/warning findings), gitignore-in-sync (.aperant/.gitignore conformance), and consistency-check (G8 — cross-artifact consistency between spec.md, implementation_plan.json, review.json, qa_signoff.json, and build-progress.json). Because these gates run here, Sections 1–3 below no longer need to re-check the verify verdict or block on review findings — the gate already did it.
+The ship gate covers constitution-read, verify-approved (qa_signoff.json verdict), review-clean (no unresolved critical/warning findings), gitignore-in-sync (.aperant/.gitignore conformance), features-reconciled (feature-registry deltas materialized in Section 0.0 + coverage/schema/integrity verified — blocking on ALL profiles, QUICK/DEBUG included), and consistency-check (G8 — cross-artifact consistency between spec.md, implementation_plan.json, review.json, qa_signoff.json, and build-progress.json). Because these gates run here, Sections 1–3 below no longer need to re-check the verify verdict or block on review findings — the gate already did it.
 
 ### 0.1 Parse `profile` from the envelope
 
@@ -249,14 +271,14 @@ If `rn_enabled !== "true"`, jump to Section 3.
 
 ### 2.6.1 Compute the feature-registry diff
 
-The auto-draft needs to know which features the PR's commits touched. Use the same `features-audit` surface that `apt:execute` uses post-step:
+The auto-draft needs to know which features the PR's commits touched. Source the diff from a read-only reconcile draft (no file is written):
 
 ```bash
-base=$(node packages/framework/bin/apt-tools.mjs task get . --id {task-id} | jq -r '.base_branch // "main"')
-feature_diff=$(node packages/framework/bin/apt-tools.mjs features-audit . --diff-since "$base" --json)
+base=$(node packages/framework/bin/apt-tools.mjs task get . --id {task-id} | jq -r '.task.base_branch // "main"')
+feature_diff=$(node packages/framework/bin/apt-tools.mjs features-reconcile . --draft --dry-run --base "$base" --task-id {task-id})
 ```
 
-The envelope shape (see `packages/framework/src/cli/commands/features-audit.mjs`) returns the list of touched features with their declared `personas: []` field (when the registry's feature row carries one).
+The envelope's `delta.files[]` entries (see `packages/framework/src/cli/commands/features-reconcile.mjs`) carry each touched surface with its `area` — feed those areas to the helper below alongside the registry's declared `personas: []` fields (when the feature rows carry one).
 
 ### 2.6.2 Decide draft vs block via the helper
 

package/skills/apt-watch-ci/SKILL.md

@@ -125,6 +125,8 @@ When `action === 'fix'` (or `diverged-rebased`/`diverged-bailed`):
 5. **Emit event.** `apt-tools event append . --type ci-watch.fix-pushed --data '{pr, attempts, commit_sha}'`.
 6. **Reschedule** per §3 step 4.
 
+When the failed check is `features-reconcile`, the fixer MAY run the deterministic repair directly instead of a free-form fix: `apt-tools features-reconcile . --draft --task-id {task-id}` in the worktree, fill the scaffold's dispositions, `apt-tools features-reconcile . --write --task-id {task-id}`, commit + push. Correctness never depends on this path — raw PRs (no active task / pr_url) repair via the red check's printed `--draft` command.
+
 For `diverged-rebased`: the cmd already returned the verb; the orchestrator runs `git -C {worktree} fetch && git rebase origin/{base}` BEFORE the fix step. On conflict the action becomes `diverged-bailed`.
 
 For `diverged-bailed`: default behavior is to exit with a PR comment summarizing the conflict. Self-heal is **opt-in** via `ci_watch.resolve_merge_conflicts` (default false) in `.aperant/config.json`. When enabled, instead of bailing, hand off to **`/apt:merge-conflict-resolution`** (`--base origin/{base}`) for the worktree; it resolves the rebase conflict inline and re-probes mergeability. On success, continue to the §5 fix-and-push step (`git push origin {branch}`) and reschedule per §3 — the watcher keeps running. On its non-convergence STOP (it aborts the rebase to a clean tree first), fall back to the bail-with-PR-comment path. The resolved branch still goes through CI; the watcher never auto-merges except via the existing config-gated green-branch `gh pr merge --squash` (§4).

package/src/cli/artifacts/self-stage.mjs

@@ -3,7 +3,8 @@
  * self-stage.mjs — self-staging wrapper for committable .aperant/ writes (C56 B4).
  *
  * Intended consumers: state-mutating CLI verbs in roadmap.mjs, task.mjs,
- * pr-review.mjs, features-audit.mjs. Call this helper just before returning
+ * pr-review.mjs, features-reconcile.mjs (--write self-stages its areas +
+ * receipt + REGISTRY.md). Call this helper just before returning
  * the success envelope so the caller's next commit picks up the writes.
  *
  * Contract:

package/src/cli/cli-wrappers/features-reconcile.mjs

@@ -0,0 +1,9 @@
+/**
+ * cli-wrappers/features-reconcile.mjs — Layer 2 wrapper for the
+ * features-reconcile cmd.
+ *
+ * Today this is a passthrough — DISPATCH calls wrap() directly.
+ * Re-exporting keeps the file-per-cmd structural seam.
+ */
+
+export { cmdFeaturesReconcile as cliFeaturesReconcile } from '../commands/features-reconcile.mjs'

package/src/cli/commands/features-reconcile.mjs

@@ -0,0 +1,157 @@
+/**
+ * commands/features-reconcile.mjs — CLI entry point for the feature-registry
+ * delta ledger (replaces the retired append-only registry-audit writer).
+ *
+ * Exactly ONE verb per invocation:
+ *   --draft  — scaffold/refresh a per-writer delta from `git diff
+ *              --name-status <base>..HEAD` (renames preserved; deletions
+ *              pre-filled `remove`; modifications marked needs-disposition).
+ *   --write  — the single ordered idempotent materializer (7 steps, ID-03):
+ *              deltas → post-images → validate → atomic area replace →
+ *              receipt → delete consumed deltas → regenerate REGISTRY.md.
+ *   --check  — read-only 4-clause verifier (ID-05): base..HEAD coverage with
+ *              blob fingerprints, area schema validity, per-area latest-
+ *              receipt integrity, no orphan consumed deltas.
+ *   --gc     — prune receipts present on origin/main AND older than
+ *              --max-age-days (default 30). Fetch failure → warned no-op.
+ *
+ * Flags: --task-id, --subtask-id (draft), --base <ref> (draft/check; an
+ * explicit ref is normalized via `merge-base HEAD <ref>` — see resolveBase;
+ * default merge-base HEAD origin/main), --dry-run (draft), --warn-only
+ * (check), --max-age-days (gc), --no-worktree-redirect.
+ *
+ * BUG-025b: the mutating verbs (--draft/--write) resolve their write root via
+ * features/write-root.mjs so registry writes land in the active task's
+ * worktree, never leak onto main. --write self-stages its committable writes
+ * (self-stage.mjs contract) so the caller's next commit picks them up.
+ */
+
+import { resolve } from 'node:path'
+import { selfStageCommittableWrites } from '../artifacts/self-stage.mjs'
+import { checkReconciled, draftDelta, gcReceipts, materialize } from '../features/reconcile.mjs'
+import { resolveWriteRoot } from '../features/write-root.mjs'
+import { parseFlags } from '../util/args.mjs'
+import { err, exitWith, ok } from '../util/result.mjs'
+
+const VERBS = ['draft', 'write', 'check', 'gc']
+
+export function cmdFeaturesReconcile(projectDir, extraArgs) {
+	if (!projectDir) {
+		return err(
+			'Usage: apt-tools features-reconcile <project-dir> (--draft|--write|--check|--gc) [flags]',
+		)
+	}
+	const root = resolve(projectDir)
+	const flags = parseFlags(extraArgs)
+	const verbs = VERBS.filter((v) => flags.has(v))
+	if (verbs.length !== 1) {
+		return err('features-reconcile requires exactly ONE of --draft | --write | --check | --gc', 1, {
+			command: 'features-reconcile',
+		})
+	}
+	const verb = verbs[0]
+
+	const taskIdFlag = flags.get('task-id')
+	const taskId = typeof taskIdFlag === 'string' && taskIdFlag.trim() ? taskIdFlag.trim() : null
+	const subtaskIdFlag = flags.get('subtask-id')
+	const subtaskId =
+		typeof subtaskIdFlag === 'string' && subtaskIdFlag.trim() ? subtaskIdFlag.trim() : null
+	const baseFlag = flags.get('base')
+	const base = typeof baseFlag === 'string' && baseFlag.trim() ? baseFlag.trim() : null
+	const noRedirect = flags.get('no-worktree-redirect') === true
+
+	// BUG-025b: only the MUTATING verbs redirect writes into the task worktree.
+	let writeRoot = root
+	let redirectNotice = null
+	if (verb === 'draft' || verb === 'write') {
+		const resolved = resolveWriteRoot({ projectDir: root, taskId, noRedirect })
+		if (resolved.error) {
+			return err(resolved.error.message, 1, {
+				command: 'features-reconcile',
+				kind: resolved.error.kind,
+				active_worktree_tasks: resolved.error.active_worktree_tasks,
+			})
+		}
+		writeRoot = resolved.writeRoot
+		redirectNotice = resolved.redirect_notice
+		if (redirectNotice) {
+			// Surface the redirect once on stderr so the executor's log carries
+			// the audit trail without polluting stdout JSON.
+			process.stderr.write(`[features-reconcile] ${redirectNotice}\n`)
+		}
+	}
+	const common = {
+		status: 'ok',
+		command: 'features-reconcile',
+		verb,
+		write_root: writeRoot,
+		...(redirectNotice ? { redirect_notice: redirectNotice } : {}),
+	}
+
+	if (verb === 'draft') {
+		if (!taskId) {
+			return err(
+				'features-reconcile --draft requires --task-id <id> (the delta path is per-writer)',
+				1,
+				{
+					command: 'features-reconcile',
+				},
+			)
+		}
+		const res = draftDelta({
+			root: writeRoot,
+			base,
+			taskId,
+			subtaskId,
+			dryRun: flags.get('dry-run') === true,
+		})
+		if (!res.ok) return err(res.error, 1, { command: 'features-reconcile', verb })
+		return ok({
+			...common,
+			delta_path: res.deltaPath,
+			wrote: res.wrote,
+			qualifying: res.qualifying,
+			base: res.base,
+			delta: res.delta,
+		})
+	}
+
+	if (verb === 'write') {
+		const res = materialize({ root: writeRoot, taskId })
+		if (res.status === 'error') {
+			return exitWith({ ...res, command: 'features-reconcile', verb, write_root: writeRoot }, 1)
+		}
+		let self_stage = null
+		if (res.status === 'ok' && Array.isArray(res.changed_paths) && res.changed_paths.length > 0) {
+			// Finally wiring the self-stage.mjs header contract: the write's
+			// committable outputs (areas + receipt + REGISTRY.md + deleted-delta
+			// paths) are staged so the ship-step commit picks them up.
+			self_stage = selfStageCommittableWrites(writeRoot, res.changed_paths)
+		}
+		return ok({
+			...common,
+			...res,
+			status: res.status,
+			...(self_stage ? { self_stage } : {}),
+		})
+	}
+
+	if (verb === 'check') {
+		const res = checkReconciled({
+			root,
+			base,
+			warnOnly: flags.get('warn-only') === true,
+			taskId,
+		})
+		const envelope = { ...common, ...res, status: res.status }
+		if (res.status === 'fail') return exitWith(envelope, 1)
+		return ok(envelope)
+	}
+
+	// verb === 'gc'
+	const maxAgeFlag = flags.get('max-age-days')
+	const maxAgeDays =
+		typeof maxAgeFlag === 'string' && /^\d+$/.test(maxAgeFlag) ? Number(maxAgeFlag) : 30
+	const res = gcReceipts({ root, maxAgeDays })
+	return ok({ ...common, ...res, status: res.status, max_age_days: maxAgeDays })
+}

package/src/cli/commands/health-check.mjs

@@ -16,8 +16,8 @@ const __dirname = dirname(__filename)
 
 /**
  * SECURITY: validate a component path string from `.aperant/features/*.json`
- * before passing it to git. The registry is on-disk JSON authored by
- * features-audit; pre-fix the orphan walker spliced this string into a
+ * before passing it to git. The registry is on-disk JSON written by the
+ * features-reconcile materializer; pre-fix the orphan walker spliced this string into a
  * shell command (`execSync(\`git rev-parse HEAD:${comp} 2>/dev/null\`)`),
  * making a malicious entry like `foo.ts; rm -rf $HOME` a command-injection
  * vector against any user who ran `apt-tools health-check`. The fix

package/src/cli/dispatch.mjs

@@ -62,7 +62,7 @@ import { cmdEditCheck } from './commands/edit-check.mjs'
 import { cmdEffects } from './commands/effects.mjs'
 import { cmdEvent } from './commands/event.mjs'
 import { cmdFanOut } from './commands/fan-out.mjs'
-import { cmdFeaturesAudit } from './commands/features-audit.mjs'
+import { cmdFeaturesReconcile } from './commands/features-reconcile.mjs'
 import { cmdFollowups } from './commands/followups.mjs'
 import { cmdGate } from './commands/gate.mjs'
 import { cmdHealthCheck } from './commands/health-check.mjs'
@@ -261,7 +261,7 @@ export const DISPATCH = {
 			exitCode: 1,
 		}))()
 	},
-	'features-audit': (args) => wrap(cmdFeaturesAudit)(args[1], args.slice(2)),
+	'features-reconcile': (args) => wrap(cmdFeaturesReconcile)(args[1], args.slice(2)),
 	'init-state': (args) => wrap(cmdInitState)(args[1], args.slice(2)),
 	'risk-check': (args) => wrap(cmdRiskCheck)(args[1], args.slice(2)),
 	'edit-check': (args) => wrap(cmdEditCheck)(args.slice(1)),