@antomanc/aginit 0.4.1 → 0.5.0

package/dist/cli/main.js

@@ -3,12 +3,13 @@ import { readFileSync } from 'node:fs';
 import { createProject } from './new.js';
 import { initCurrentDirectory } from './init.js';
 import { runDoctor } from './doctor.js';
-import { claudeCodeEnabled, ensureClaudeSkillLinks, updateSkills } from '../adapters/skills.js';
+import { ensureClaudeSkillLinks, updateSkills } from '../adapters/skills.js';
 import { ignoreVendoredSkills } from '../adapters/tool-ignores.js';
-import { setupClaudeMarkdown } from '../adapters/agents-md.js';
 import { buildGraft } from '../adapters/graft.js';
 import { readProjectConfig } from '../config/validation.js';
 import { logger } from '../utils/logger.js';
+import { changeCapabilities, listCapabilities } from './capabilities.js';
+import { syncAgentDocs } from './new.js';
 import { isInteractive, promptNewProject, promptInitProject, runInteractiveWizard } from './wizard.js';
 /**
  * Read the version from package.json so releases only bump one place.
@@ -23,23 +24,80 @@ function readVersion() {
         return '0.0.0';
     }
 }
+const list = (value, previous = []) => [
+    ...previous,
+    ...value
+        .split(',')
+        .map((item) => item.trim())
+        .filter(Boolean)
+];
+/** v2 profile options shared by the root command, `new` and `init`. */
+function withProfileOptions(command) {
+    return command
+        .option('--platform <platform>', 'Platform: auto | web | mobile-native | mobile-rn | backend | cli')
+        .option('--methodology <preset>', 'Workflow skills: pocock | superpowers | minimal')
+        .option('--design <design>', 'Design system: impeccable | none')
+        .option('--testing <engine>', 'Testing: e2e | playwright | vitest | native')
+        .option('--ui-driver <driver>', 'UI driver: auto | agent-browser | agent-device | none')
+        .option('--addons <ids>', 'Add-ons: context-mode, worktrunk, chrome-devtools-mcp, browserskill', list)
+        .option('--add-skill <owner/repo>', 'Add a skill repository as a custom capability (repeatable)', list)
+        .option('--without <id>', 'Disable a capability, e.g. graft or humanizer (repeatable)', list);
+}
+function profileFlags(options) {
+    return {
+        platform: options.platform === 'auto' ? undefined : options.platform,
+        methodology: options.methodology,
+        design: options.design,
+        testing: options.testing,
+        uiDriver: options.uiDriver,
+        addons: options.addons,
+        addSkills: options.addSkill,
+        without: options.without
+    };
+}
 export function createCliProgram() {
     const program = new Command();
     program
         .name('aginit')
         .description('Set up a new or existing project for AI coding agents')
-        .version(readVersion());
-    // Root action: interactive wizard when in TTY, else display help
-    program.action(async () => {
-        if (isInteractive()) {
-            await runInteractiveWizard();
-        }
-        else {
-            program.outputHelp();
+        .version(readVersion())
+        .enablePositionalOptions()
+        .option('-p, --preset <preset>', 'Project preset: web | cli | generic')
+        .option('-f, --framework <framework>', 'Web framework: none | vite | next | existing')
+        .option('-m, --package-manager <pm>', 'Package manager: pnpm | npm | yarn | bun')
+        .option('--no-skills', 'Skip installing AI skills')
+        .option('--no-graft', 'Skip codebase graph (Graft) setup')
+        .option('--no-git', 'Skip git repository initialization')
+        .option('--dry-run', 'Simulate setup without writing changes to disk')
+        .option('-y, --yes', 'Initialize the current directory without prompts (saved or detected settings)');
+    withProfileOptions(program);
+    // Root action: `aginit [options]` initializes the current directory. Bare
+    // `aginit` opens the wizard in a TTY and prints help otherwise, so a stray
+    // invocation in CI never rewrites a project.
+    program.action(async (options, command) => {
+        const explicit = command.options.some((option) => command.getOptionValueSource(option.attributeName()) === 'cli');
+        if (!explicit) {
+            if (isInteractive())
+                await runInteractiveWizard();
+            else
+                program.outputHelp();
+            return;
         }
+        const complete = await initCurrentDirectory({
+            preset: options.preset,
+            framework: options.framework,
+            packageManager: options.packageManager,
+            skills: options.skills,
+            graft: options.graft,
+            git: options.git,
+            dryRun: options.dryRun,
+            profile: profileFlags(options)
+        });
+        if (!complete && !options.dryRun)
+            process.exitCode = 1;
     });
     // Command: new
-    program
+    const newCommand = program
         .command('new [projectName]')
         .description('Create a brand new AI-first project')
         .option('-p, --preset <preset>', 'Project preset: web | cli | generic', 'generic')
@@ -48,12 +106,14 @@ export function createCliProgram() {
         .option('--no-skills', 'Skip installing AI skills')
         .option('--no-graft', 'Skip codebase graph (Graft) setup')
         .option('--no-git', 'Skip git repository initialization')
-        .option('--dry-run', 'Simulate creation without writing changes to disk')
+        .option('--dry-run', 'Simulate creation without writing changes to disk');
+    withProfileOptions(newCommand)
         .action(async (projectName, options, command) => {
         let finalName = projectName;
         let finalPreset = options.preset;
         let finalFramework = options.framework;
         let finalPackageManager = options.packageManager;
+        let finalProfile = profileFlags(options);
         if (!finalName) {
             if (!isInteractive()) {
                 program.error("error: missing required argument 'projectName'");
@@ -67,12 +127,14 @@ export function createCliProgram() {
                     : undefined,
                 packageManager: command.getOptionValueSource('packageManager') === 'cli'
                     ? options.packageManager
-                    : undefined
+                    : undefined,
+                profile: finalProfile
             });
             finalName = answers.projectName;
             finalPreset = answers.preset;
             finalFramework = answers.framework;
             finalPackageManager = answers.packageManager;
+            finalProfile = answers.profile;
         }
         const complete = await createProject(finalName, {
             preset: finalPreset,
@@ -81,13 +143,14 @@ export function createCliProgram() {
             skills: options.skills,
             graft: options.graft,
             git: options.git,
-            dryRun: options.dryRun
+            dryRun: options.dryRun,
+            profile: finalProfile
         });
         if (!complete && !options.dryRun)
             process.exitCode = 1;
     });
     // Command: init
-    program
+    const initCommand = program
         .command('init')
         .description('Initialize or update AI-first capabilities in the current directory')
         .option('-p, --preset <preset>', 'Project preset: web | cli | generic')
@@ -97,23 +160,28 @@ export function createCliProgram() {
         .option('--no-graft', 'Skip codebase graph (Graft) setup')
         .option('--no-git', 'Skip git repository initialization')
         .option('--dry-run', 'Simulate setup without writing changes to disk')
+        .option('-y, --yes', 'Skip the prompts and use saved or detected settings');
+    withProfileOptions(initCommand)
         .action(async (options, command) => {
         let finalPreset = options.preset;
         let finalFramework = options.framework;
         let finalPackageManager = options.packageManager;
+        let finalProfile = profileFlags(options);
         const isPresetExplicit = command.getOptionValueSource('preset') === 'cli';
         const isFrameworkExplicit = command.getOptionValueSource('framework') === 'cli';
         const isPmExplicit = command.getOptionValueSource('packageManager') === 'cli';
         const savedConfig = readProjectConfig(process.cwd());
-        if (isInteractive() && !isPresetExplicit && !options.dryRun && !savedConfig) {
+        if (isInteractive() && !isPresetExplicit && !options.dryRun && !options.yes && !savedConfig) {
             const answers = await promptInitProject({
                 preset: isPresetExplicit ? options.preset : undefined,
                 framework: isFrameworkExplicit ? options.framework : undefined,
-                packageManager: isPmExplicit ? options.packageManager : undefined
+                packageManager: isPmExplicit ? options.packageManager : undefined,
+                profile: finalProfile
             });
             finalPreset = answers.preset;
             finalFramework = answers.framework;
             finalPackageManager = answers.packageManager;
+            finalProfile = answers.profile;
         }
         const complete = await initCurrentDirectory({
             preset: finalPreset,
@@ -122,11 +190,40 @@ export function createCliProgram() {
             skills: options.skills,
             graft: options.graft,
             git: options.git,
-            dryRun: options.dryRun
+            dryRun: options.dryRun,
+            profile: finalProfile
         });
         if (!complete && !options.dryRun)
             process.exitCode = 1;
     });
+    // Command: list
+    program
+        .command('list')
+        .description('List every capability in the registry and which ones this project enables')
+        .option('-d, --dir <path>', 'Project directory', process.cwd())
+        .action((options) => listCapabilities(options.dir));
+    // Command: add
+    program
+        .command('add <capabilities...>')
+        .description('Enable capabilities (registry ids or owner/repo skill repositories)')
+        .option('--dry-run', 'Simulate the change')
+        .action(async (ids, options) => {
+        const ok = await changeCapabilities(process.cwd(), { add: ids.flatMap((id) => list(id)) }, {
+            dryRun: options.dryRun
+        });
+        if (!ok && !options.dryRun)
+            process.exitCode = 1;
+    });
+    // Command: remove
+    program
+        .command('remove <capabilities...>')
+        .description('Disable capabilities and remove the skills they installed')
+        .option('--dry-run', 'Simulate the change')
+        .action(async (ids, options) => {
+        const ok = await changeCapabilities(process.cwd(), { remove: ids.flatMap((id) => list(id)) }, { dryRun: options.dryRun });
+        if (!ok && !options.dryRun)
+            process.exitCode = 1;
+    });
     // Command: doctor
     program
         .command('doctor')
@@ -148,8 +245,8 @@ export function createCliProgram() {
             ? true
             : await updateSkills(targetDir, { dryRun: options.dryRun })) &&
             (config ? await ensureClaudeSkillLinks(targetDir, config, { dryRun: options.dryRun }) : true);
-        if (config && claudeCodeEnabled(config))
-            setupClaudeMarkdown(targetDir, { dryRun: options.dryRun });
+        if (config)
+            syncAgentDocs(targetDir, config, { dryRun: options.dryRun });
         if (config?.skills.sources.length !== 0) {
             const advice = ignoreVendoredSkills(targetDir, { dryRun: options.dryRun, silent: true });
             for (const line of advice)

package/dist/cli/main.js.map

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package/dist/cli/new.d.ts

@@ -1,4 +1,5 @@
-import { PresetType, WebFramework, PackageManager } from '../config/schema.js';
+import { AginitConfig, PresetType, WebFramework, PackageManager } from '../config/schema.js';
+import { CapabilityDescriptor, MicroDoc, ProfileFlags } from '../registry/index.js';
 export interface NewProjectOptions {
     preset?: PresetType;
     framework?: WebFramework;
@@ -9,6 +10,19 @@ export interface NewProjectOptions {
     dryRun?: boolean;
     targetDir?: string;
     silent?: boolean;
+    /** v2 profile flags: --platform, --methodology, --design, --testing, --ui-driver, ... */
+    profile?: ProfileFlags;
 }
 export declare function createProject(projectName: string, options?: NewProjectOptions): Promise<boolean>;
+/** Binaries of active capabilities that are not on PATH (setups report their own). */
+export declare function missingBinaries(active: CapabilityDescriptor[], setups: string[]): Promise<Array<{
+    name: string;
+    bin: string;
+    install: string;
+}>>;
+/** Refresh AGENTS.md, CLAUDE.md and docs/agents/ from the config. */
+export declare function syncAgentDocs(targetDir: string, config: AginitConfig, options?: {
+    dryRun?: boolean;
+    silent?: boolean;
+}): MicroDoc[];
 //# sourceMappingURL=new.d.ts.map

package/dist/cli/new.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"new.d.ts","sourceRoot":"","sources":["../../src/cli/new.ts"],"names":[],"mappings":"AAGA,OAAO,EAEL,UAAU,EACV,YAAY,EACZ,cAAc,EACf,MAAM,qBAAqB,CAAC;AAwB7B,MAAM,WAAW,iBAAiB;IAChC,MAAM,CAAC,EAAE,UAAU,CAAC;IACpB,SAAS,CAAC,EAAE,YAAY,CAAC;IACzB,cAAc,CAAC,EAAE,cAAc,CAAC;IAChC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,MAAM,CAAC,EAAE,OAAO,CAAC;CAClB;AAED,wBAAsB,aAAa,CACjC,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE,iBAAsB,GAC9B,OAAO,CAAC,OAAO,CAAC,CAmKlB"}
+{"version":3,"file":"new.d.ts","sourceRoot":"","sources":["../../src/cli/new.ts"],"names":[],"mappings":"AAGA,OAAO,EACL,YAAY,EAEZ,UAAU,EACV,YAAY,EACZ,cAAc,EACf,MAAM,qBAAqB,CAAC;AAS7B,OAAO,EAGL,oBAAoB,EAKpB,QAAQ,EAGR,YAAY,EAGb,MAAM,sBAAsB,CAAC;AAe9B,MAAM,WAAW,iBAAiB;IAChC,MAAM,CAAC,EAAE,UAAU,CAAC;IACpB,SAAS,CAAC,EAAE,YAAY,CAAC;IACzB,cAAc,CAAC,EAAE,cAAc,CAAC;IAChC,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,SAAS,CAAC,EAAE,MAAM,CAAC;IACnB,MAAM,CAAC,EAAE,OAAO,CAAC;IACjB,yFAAyF;IACzF,OAAO,CAAC,EAAE,YAAY,CAAC;CACxB;AAiGD,wBAAsB,aAAa,CACjC,WAAW,EAAE,MAAM,EACnB,OAAO,GAAE,iBAAsB,GAC9B,OAAO,CAAC,OAAO,CAAC,CA+IlB;AAED,sFAAsF;AACtF,wBAAsB,eAAe,CACnC,MAAM,EAAE,oBAAoB,EAAE,EAC9B,MAAM,EAAE,MAAM,EAAE,GACf,OAAO,CAAC,KAAK,CAAC;IAAE,IAAI,EAAE,MAAM,CAAC;IAAC,GAAG,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,MAAM,CAAA;CAAE,CAAC,CAAC,CAUhE;AAED,qEAAqE;AACrE,wBAAgB,aAAa,CAC3B,SAAS,EAAE,MAAM,EACjB,MAAM,EAAE,YAAY,EACpB,OAAO,GAAE;IAAE,MAAM,CAAC,EAAE,OAAO,CAAC;IAAC,MAAM,CAAC,EAAE,OAAO,CAAA;CAAO,GACnD,QAAQ,EAAE,CAMZ"}

package/dist/cli/new.js

@@ -1,17 +1,99 @@
 import path from 'node:path';
 import pc from 'picocolors';
-import { getDefaultConfig, upgradeLegacySkillConfig } from '../config/defaults.js';
+import { getDefaultConfig, presetPlatform, upgradeLegacySkillConfig } from '../config/defaults.js';
 import { AGINIT_CONFIG_FILENAME } from '../config/schema.js';
 import { getPreset } from '../presets/registry.js';
 import { setupGit } from '../adapters/git.js';
 import { setupAgentsMarkdown, setupClaudeMarkdown } from '../adapters/agents-md.js';
 import { claudeCodeEnabled, installAllSkills, skillAgents } from '../adapters/skills.js';
-import { initGraft } from '../adapters/graft.js';
 import { ignoreVendoredSkills } from '../adapters/tool-ignores.js';
-import { agentBrowserConfigured, agentBrowserStubInstalled, setupAgentBrowser } from '../adapters/agent-browser.js';
-import { ensureDir, writeJsonFile } from '../utils/fs.js';
+import { agentBrowserStubInstalled } from '../adapters/agent-browser.js';
+import { microDocPath, projectProfile, resolvePlatformStack, setupMicroDocs } from '../adapters/agent-docs.js';
+import { detectProject } from '../detect/index.js';
+import { activeCapabilities, applyResolvedProfile, e2eDirFor, hasProfileFlags, inferCapabilities, isNodeStack, PLATFORMS, resolveCapabilities } from '../registry/index.js';
+import { SETUP_LABELS, SETUPS } from '../registry/setup.js';
+import { commandExists } from '../utils/shell.js';
+import { ensureDir, fileExists, writeJsonFile } from '../utils/fs.js';
 import { readProjectConfig, readPackageManifest, validateConfig, validateProjectName, PRESETS, FRAMEWORKS, SUPPORTED_PACKAGE_MANAGERS } from '../config/validation.js';
 import { logger } from '../utils/logger.js';
+/**
+ * Work out the config to save. A saved config is reused as written, so plain
+ * reruns are deterministic; profile flags (and --preset/--framework for the
+ * browser switches) are applied on top of it.
+ */
+function resolveConfig(projectName, targetDir, options, existingConfig, manifest) {
+    const flags = options.profile ?? {};
+    const detected = detectProject(targetDir);
+    const saved = existingConfig ? resolvePlatformStack(existingConfig, targetDir) : null;
+    const presetHint = options.preset ?? existingConfig?.preset;
+    const platform = flags.platform ??
+        existingConfig?.platform ??
+        (options.preset && options.preset !== 'generic'
+            ? presetPlatform(options.preset)
+            : (saved?.platform ?? detected.platform ?? presetPlatform(presetHint ?? 'generic')));
+    const stack = existingConfig?.stack ??
+        (detected.stack !== 'unknown'
+            ? detected.stack
+            : platform === 'mobile-native'
+                ? 'unknown'
+                : 'node');
+    const presetName = options.preset ?? existingConfig?.preset ?? 'generic';
+    const framework = options.framework ?? (presetName === 'web' ? existingConfig?.framework : undefined);
+    if (presetName !== 'web' && framework && framework !== 'none' && framework !== 'existing')
+        throw new Error('A web framework requires --preset web.');
+    if (presetName === 'web' && framework === 'existing' && !manifest)
+        throw new Error('An existing web framework requires an existing package.json. Use --framework none for a new baseline.');
+    if (!isNodeStack(stack) && options.preset && options.preset !== 'generic')
+        throw new Error(`--preset ${options.preset} scaffolds a Node.js project, but this is a ${stack} project. ` +
+            'Use --preset generic (the default) to keep the project root free of package.json.');
+    const packageManager = options.packageManager ?? existingConfig?.packageManager ?? 'pnpm';
+    const defaults = getDefaultConfig(projectName, presetName, {
+        framework,
+        packageManager,
+        platform,
+        stack,
+        flags,
+        skills: options.skills !== false,
+        // A generic preset leaves an existing package.json (and its test runner) alone.
+        harness: !(presetName === 'generic' && manifest !== null)
+    });
+    if (!existingConfig)
+        return validateConfig(defaults);
+    let config = {
+        ...existingConfig,
+        name: projectName,
+        preset: presetName,
+        ...(isNodeStack(stack) || existingConfig.packageManager !== undefined ? { packageManager } : {}),
+        ...(presetName === 'web' ? { framework: framework ?? 'none' } : {}),
+        browser: options.framework !== undefined || options.preset !== undefined
+            ? { ...existingConfig.browser, ...defaults.browser }
+            : existingConfig.browser,
+        skills: upgradeLegacySkillConfig(existingConfig.skills)
+    };
+    if (hasProfileFlags(flags)) {
+        const base = existingConfig.capabilities ?? inferCapabilities(existingConfig);
+        const profile = resolveCapabilities({
+            platform,
+            stack,
+            framework,
+            base,
+            basePlatform: saved.platform,
+            flags,
+            custom: existingConfig.customCapabilities
+        }, existingConfig.disabledCapabilities);
+        config = applyResolvedProfile({ ...config, platform, stack }, profile, {
+            skills: true,
+            previous: [...base, ...(existingConfig.customCapabilities ?? []).map((c) => c.id)]
+        });
+    }
+    else if (config.capabilities && config.browser.playwright !== existingConfig.browser.playwright) {
+        // --framework turned the Playwright switch; keep the capability list in step.
+        config.capabilities = config.browser.playwright
+            ? [...config.capabilities, 'playwright']
+            : config.capabilities.filter((id) => id !== 'playwright');
+    }
+    return validateConfig(config);
+}
 export async function createProject(projectName, options = {}) {
     validateProjectName(projectName);
     if (options.preset !== undefined && !PRESETS.includes(options.preset))
@@ -21,52 +103,41 @@ export async function createProject(projectName, options = {}) {
     if (options.packageManager !== undefined &&
         !SUPPORTED_PACKAGE_MANAGERS.includes(options.packageManager))
         throw new Error('Invalid package manager.');
+    if (options.profile?.platform !== undefined && !PLATFORMS.includes(options.profile.platform))
+        throw new Error(`Invalid platform. Valid platforms are: ${PLATFORMS.join(', ')}`);
     const defaultDir = projectName.startsWith('@') && projectName.includes('/')
         ? projectName.split('/').pop()
         : projectName;
     const targetDir = path.resolve(options.targetDir || path.join(process.cwd(), defaultDir));
     const existingConfig = readProjectConfig(targetDir);
     const manifest = readPackageManifest(targetDir); // Validate before creating or modifying anything.
-    const presetName = options.preset ?? existingConfig?.preset ?? 'generic';
-    const framework = options.framework ?? (presetName === 'web' ? existingConfig?.framework : undefined);
-    if (presetName !== 'web' && framework && framework !== 'none' && framework !== 'existing')
-        throw new Error('A web framework requires --preset web.');
-    if (presetName === 'web' && framework === 'existing' && !manifest)
-        throw new Error('An existing web framework requires an existing package.json. Use --framework none for a new baseline.');
-    const packageManager = options.packageManager ?? existingConfig?.packageManager ?? 'pnpm';
-    const dryRun = !!options.dryRun;
-    const silent = !!options.silent;
-    const presetHandler = getPreset(presetName);
-    const defaults = getDefaultConfig(projectName, presetName, {
-        framework,
-        packageManager
-    });
-    const config = validateConfig(existingConfig
-        ? {
-            ...existingConfig,
-            name: projectName,
-            preset: presetName,
-            packageManager,
-            ...(presetName === 'web' ? { framework: framework ?? 'none' } : {}),
-            browser: options.framework !== undefined || options.preset !== undefined
-                ? { ...existingConfig.browser, ...defaults.browser }
-                : existingConfig.browser,
-            skills: upgradeLegacySkillConfig(existingConfig.skills)
-        }
-        : defaults);
-    if (presetName !== 'web')
+    const config = resolveConfig(projectName, targetDir, options, existingConfig, manifest);
+    if (config.preset !== 'web')
         delete config.framework;
     if (options.graft === false)
         config.codebase = { ...config.codebase, graft: false };
     if (options.skills === false && !existingConfig)
         config.skills.sources = [];
+    const presetName = config.preset;
+    const packageManager = config.packageManager ?? 'pnpm';
+    const { platform, stack } = resolvePlatformStack(config, targetDir);
+    const dryRun = !!options.dryRun;
+    const silent = !!options.silent;
+    const presetHandler = getPreset(presetName);
+    const active = activeCapabilities(config);
     if (!silent)
-        logger.banner(`Aginit — ${projectName}`, `Preset: ${presetName} | PM: ${packageManager} | Target: ${targetDir}${dryRun ? ' (DRY RUN)' : ''}`);
+        logger.banner(`Aginit — ${projectName}`, `Preset: ${presetName} | Platform: ${platform} (${stack})${isNodeStack(stack) ? ` | PM: ${packageManager}` : ''} | Target: ${targetDir}${dryRun ? ' (DRY RUN)' : ''}`);
+    if (!silent)
+        logger.dim(`Capabilities: ${active.map((c) => c.id).join(', ') || 'none'}`);
     let complete = true;
-    // The agent-browser skill stub is inert without its CLI and browser
-    // binaries, so provisioning them gets its own step when the skill applies.
-    const agentBrowserWanted = agentBrowserConfigured(config.skills.sources) || agentBrowserStubInstalled(targetDir);
-    const totalSteps = agentBrowserWanted ? 7 : 6;
+    const installSkills = options.skills !== false && config.skills.sources.length > 0;
+    // Upstream setups (agent-browser runtime, e2e, Graft) in registry order, Graft last
+    // so its first index sees every generated file.
+    const setups = active
+        .flatMap((capability) => capability.install.flatMap((step) => (step.kind === 'setup' ? [step.setup] : [])))
+        .filter((setup) => !(setup === 'graft' && options.graft === false))
+        .sort((a, b) => Number(a === 'graft') - Number(b === 'graft'));
+    const totalSteps = 6 + setups.length;
     let currentStep = 1;
     // Scaffold into the clean directory before Git adds files that upstream tools reject.
     if (!silent)
@@ -93,18 +164,16 @@ export async function createProject(projectName, options = {}) {
     });
     if (!silent)
         logger.success(`Wrote ${AGINIT_CONFIG_FILENAME}`);
-    // Step 4: Write or update AGENTS.md intake contract
+    // Step 4: AGENTS.md (task routing) and the docs/agents/ micro-docs it routes to
     if (!silent)
-        logger.step(currentStep++, totalSteps, 'Generating AGENTS.md intake guidance');
-    setupAgentsMarkdown(targetDir, config, { dryRun, silent });
-    if (claudeCodeEnabled(config))
-        setupClaudeMarkdown(targetDir, { dryRun, silent });
+        logger.step(currentStep++, totalSteps, 'Generating AGENTS.md and docs/agents/');
+    const docs = syncAgentDocs(targetDir, config, { dryRun, silent });
     if (!silent)
-        logger.success('Configured AGENTS.md');
+        logger.success(`Configured AGENTS.md${docs.length ? ` and ${docs.map(microDocPath).join(', ')}` : ''}`);
     // Step 5: Install skills via skills.sh engine
     if (!silent)
         logger.step(currentStep++, totalSteps, 'Installing upstream skills via skills.sh');
-    if (options.skills !== false && config.skills.sources.length > 0) {
+    if (installSkills) {
         const { installed, failed } = await installAllSkills(targetDir, config.skills.sources, {
             agents: skillAgents(config),
             dryRun,
@@ -123,37 +192,33 @@ export async function createProject(projectName, options = {}) {
     else if (!silent) {
         logger.dim('Skills installation skipped (--no-skills or empty configuration)');
     }
-    if ((options.skills !== false && config.skills.sources.length > 0) || agentBrowserWanted) {
+    const agentBrowserStub = agentBrowserStubInstalled(targetDir);
+    if (installSkills || agentBrowserStub) {
         const advice = ignoreVendoredSkills(targetDir, { dryRun, silent: true });
         if (!silent)
             for (const line of advice)
                 logger.warn(line);
     }
-    // Provision the agent-browser runtime the skill stub drives
-    if (agentBrowserWanted) {
+    // A stub installed earlier still needs its runtime, even when skills are skipped now.
+    if (agentBrowserStub && !setups.includes('agent-browser'))
+        setups.unshift('agent-browser');
+    for (const setup of setups) {
         if (!silent)
-            logger.step(currentStep++, totalSteps, 'Provisioning agent-browser runtime');
-        const abOk = await setupAgentBrowser({ dryRun, silent, cwd: targetDir });
-        complete &&= abOk;
-        if (!silent && abOk)
-            logger.success('agent-browser runtime ready (CLI + browser)');
+            logger.step(currentStep++, totalSteps, SETUP_LABELS[setup]);
+        const ok = await SETUPS[setup]({ targetDir, config, platform, stack, dryRun, silent });
+        complete &&= ok;
+        if (ok && !silent)
+            logger.success(`${setup} ready`);
     }
-    // Codebase intelligence (Graft)
+    // CLIs aginit does not install: report the missing ones with their install command.
     if (!silent)
-        logger.step(currentStep++, totalSteps, 'Configuring codebase intelligence');
-    if (config.codebase.graft && options.graft !== false) {
-        const graftOk = await initGraft(targetDir, {
-            dryRun,
-            silent,
-            claude: claudeCodeEnabled(config)
-        });
-        complete &&= graftOk;
-        if (graftOk && !silent) {
-            logger.success('Graft context graph initialized');
-        }
-    }
-    else if (!silent) {
-        logger.dim('Graft setup skipped (--no-graft or codebase.graft: false)');
+        logger.step(currentStep++, totalSteps, 'Checking capability CLIs');
+    const missing = await missingBinaries(active, setups);
+    if (!silent) {
+        if (missing.length === 0)
+            logger.success('Every capability CLI is available');
+        for (const { name, bin, install } of missing)
+            logger.warn(`${name} needs the \`${bin}\` CLI: ${install}`);
     }
     if (!silent) {
         console.log();
@@ -166,11 +231,35 @@ export async function createProject(projectName, options = {}) {
         const relativeTarget = path.relative(process.cwd(), targetDir);
         if (relativeTarget)
             console.log(pc.cyan(`  cd ${relativeTarget}`));
-        console.log(pc.cyan(`  ${packageManager} install`));
+        if (isNodeStack(stack) && (manifest || fileExists(path.join(targetDir, 'package.json')) || dryRun))
+            console.log(pc.cyan(`  ${packageManager} install`));
+        if (active.some((c) => c.id === 'e2e') && e2eDirFor(stack))
+            console.log(pc.cyan(`  (cd ${e2eDirFor(stack)} && npm install)`));
         console.log(pc.cyan('  Open the repository in your AI coding agent'));
         console.log(pc.dim('  Prompt the agent: ') + pc.bold(pc.green('"bootstrap this project"')));
         console.log();
     }
     return complete;
 }
+/** Binaries of active capabilities that are not on PATH (setups report their own). */
+export async function missingBinaries(active, setups) {
+    const missing = [];
+    for (const capability of active) {
+        if (capability.install.some((step) => step.kind === 'setup' && setups.includes(step.setup)))
+            continue;
+        for (const step of capability.install)
+            if (step.kind === 'binary' && !(await commandExists(step.bin)))
+                missing.push({ name: capability.name, bin: step.bin, install: step.install });
+    }
+    return missing;
+}
+/** Refresh AGENTS.md, CLAUDE.md and docs/agents/ from the config. */
+export function syncAgentDocs(targetDir, config, options = {}) {
+    const scripts = readPackageManifest(targetDir)?.scripts;
+    const docs = setupMicroDocs(targetDir, projectProfile(config, { targetDir, scripts }), options);
+    setupAgentsMarkdown(targetDir, config, { ...options, docs });
+    if (claudeCodeEnabled(config))
+        setupClaudeMarkdown(targetDir, options);
+    return docs;
+}
 //# sourceMappingURL=new.js.map