@animus-labs/cortex 0.2.0

package/dist/tools/bash/safety.js.map

@@ -0,0 +1 @@
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package/dist/tools/edit.d.ts

@@ -0,0 +1,57 @@
+/**
+ * Edit tool: make precise string replacements in existing files.
+ *
+ * Supports exact string matching with a uniqueness constraint
+ * (when replaceAll is false). Enforces read-before-edit via ReadRegistry.
+ * Handles line ending normalization for cross-platform compatibility.
+ *
+ * Reference: docs/cortex/tools/edit.md
+ */
+import { Type, type Static } from 'typebox';
+import type { EditHistory } from './shared/edit-history.js';
+import type { FileMutationLock } from './shared/file-mutation-lock.js';
+import type { ReadRegistry } from './shared/read-registry.js';
+import type { ToolContentDetails } from '../types.js';
+import { type DiffHunk } from './write.js';
+import type { CortexToolRuntime } from './runtime.js';
+export declare const EditParams: Type.TObject<{
+    file_path: Type.TString;
+    old_string: Type.TString;
+    new_string: Type.TString;
+    replace_all: Type.TOptional<Type.TBoolean>;
+}>;
+export type EditParamsType = Static<typeof EditParams>;
+export interface EditDetails {
+    filePath: string;
+    oldString: string;
+    newString: string;
+    replacementCount: number;
+    replaceAll: boolean;
+    diff: DiffHunk[];
+    originalContent: string;
+    /**
+     * Which matcher tier resolved the edit. Useful for consumers that want
+     * to surface "we applied a fuzzy match" in the UI. Absent when no edit
+     * was performed (errors, identical strings, etc.).
+     */
+    matchTier?: 'exact' | 'line-trimmed' | 'indentation-flexible';
+}
+export interface EditToolConfig {
+    runtime?: CortexToolRuntime | undefined;
+    readRegistry?: ReadRegistry | undefined;
+    fileMutationLock?: FileMutationLock | undefined;
+    /**
+     * Undo stack. When provided, every successful edit pushes a
+     * pre-mutation snapshot so `UndoEdit` can restore the prior state.
+     * Optional — tests and embedded consumers that don't expose undo
+     * may omit it; the tool degrades gracefully to current behavior.
+     */
+    editHistory?: EditHistory | undefined;
+}
+export declare function createEditTool(config: EditToolConfig): {
+    name: string;
+    description: string;
+    parameters: typeof EditParams;
+    execute: (params: EditParamsType) => Promise<ToolContentDetails<EditDetails>>;
+};
+//# sourceMappingURL=edit.d.ts.map

package/dist/tools/edit.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/edit.js

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+/**
+ * Edit tool: make precise string replacements in existing files.
+ *
+ * Supports exact string matching with a uniqueness constraint
+ * (when replaceAll is false). Enforces read-before-edit via ReadRegistry.
+ * Handles line ending normalization for cross-platform compatibility.
+ *
+ * Reference: docs/cortex/tools/edit.md
+ */
+import * as crypto from 'node:crypto';
+import * as fs from 'node:fs';
+import * as path from 'node:path';
+import { Type } from 'typebox';
+import { computeDiff } from './write.js';
+import { attachRuntimeAwareTool } from './runtime.js';
+import { findMatch, findNearestMatch, reindentReplacement, } from './shared/edit-matcher.js';
+// ---------------------------------------------------------------------------
+// Schema
+// ---------------------------------------------------------------------------
+export const EditParams = Type.Object({
+    file_path: Type.String({ description: 'Absolute path to the file to edit' }),
+    old_string: Type.String({ description: 'The exact text to find and replace' }),
+    new_string: Type.String({ description: 'The replacement text (must differ from old_string)' }),
+    replace_all: Type.Optional(Type.Boolean({
+        description: 'Replace all occurrences. Default: false (replace first unique match).',
+        default: false,
+    })),
+});
+/**
+ * Given a successful match (not `none` and not `ambiguous`), produce the
+ * rebuilt file content along with the replacement count and the tier
+ * that resolved the edit. Caller is responsible for having already
+ * rejected `none`, `ambiguous`, and the tier-1 `count>1 && !replaceAll`
+ * case. Returns null when `match` is one of those guarded states, which
+ * is a programming error at the call site.
+ */
+function applyReplacement(match, normalizedContent, normalizedOldString, normalizedNewString, replaceAll) {
+    if (match.kind === 'exact') {
+        if (replaceAll) {
+            return {
+                newContent: normalizedContent
+                    .split(normalizedOldString)
+                    .join(normalizedNewString),
+                replacementCount: match.count,
+                tier: 'exact',
+            };
+        }
+        return {
+            newContent: normalizedContent.slice(0, match.startIndex) +
+                normalizedNewString +
+                normalizedContent.slice(match.startIndex + match.matchedLength),
+            replacementCount: 1,
+            tier: 'exact',
+        };
+    }
+    if (match.kind === 'line-trimmed') {
+        return {
+            newContent: normalizedContent.slice(0, match.startIndex) +
+                normalizedNewString +
+                normalizedContent.slice(match.startIndex + match.matchedLength),
+            replacementCount: 1,
+            tier: 'line-trimmed',
+        };
+    }
+    if (match.kind === 'indentation-flexible') {
+        const reindented = reindentReplacement(normalizedNewString, match.needleIndent, match.haystackIndent);
+        return {
+            newContent: normalizedContent.slice(0, match.startIndex) +
+                reindented +
+                normalizedContent.slice(match.startIndex + match.matchedLength),
+            replacementCount: 1,
+            tier: 'indentation-flexible',
+        };
+    }
+    return null;
+}
+// ---------------------------------------------------------------------------
+// Tool factory
+// ---------------------------------------------------------------------------
+export function createEditTool(config) {
+    const readRegistry = config.runtime?.readRegistry ?? config.readRegistry;
+    if (!readRegistry) {
+        throw new Error('createEditTool requires either runtime or readRegistry');
+    }
+    const fileMutationLock = config.runtime?.fileMutationLock ?? config.fileMutationLock;
+    const editHistory = config.runtime?.editHistory ?? config.editHistory;
+    /** Build a no-op result for early returns. */
+    function noChange(filePath, oldString, newString, replaceAll, text, originalContent = '') {
+        return {
+            content: [{ type: 'text', text }],
+            details: { filePath, oldString, newString, replacementCount: 0, replaceAll, diff: [], originalContent },
+        };
+    }
+    const tool = {
+        name: 'Edit',
+        description: 'Make precise string replacements in an existing file. ' +
+            'You MUST Read the file before using this tool. The edit will be rejected if the file has not been read first.',
+        parameters: EditParams,
+        async execute(params) {
+            const filePath = path.resolve(params.file_path);
+            const oldString = params.old_string;
+            const newString = params.new_string;
+            const replaceAll = params.replace_all ?? false;
+            // Check identical strings (no lock needed)
+            if (oldString === newString) {
+                return noChange(filePath, oldString, newString, replaceAll, 'old_string and new_string are identical. No change needed.');
+            }
+            // Check file exists (no lock needed)
+            let stat;
+            try {
+                stat = await fs.promises.stat(filePath);
+            }
+            catch (err) {
+                const code = err.code;
+                if (code === 'ENOENT') {
+                    return noChange(filePath, oldString, newString, replaceAll, `File does not exist: ${filePath}`);
+                }
+                if (code === 'EACCES') {
+                    return noChange(filePath, oldString, newString, replaceAll, `Permission denied: ${filePath}`);
+                }
+                throw err;
+            }
+            // Acquire per-file mutation lock (serializes concurrent same-file edits)
+            const release = fileMutationLock ? await fileMutationLock.acquire(filePath) : undefined;
+            try {
+                // Enforce read-before-edit
+                if (!readRegistry.hasBeenRead(filePath)) {
+                    return noChange(filePath, oldString, newString, replaceAll, 'You must Read this file before editing it.');
+                }
+                // Mtime freshness check: reject if file changed since last Read.
+                // Using strict greater-than (not !==) to tolerate Windows/cloud-sync
+                // quirks where mtime can go backwards without a real modification.
+                // When mtime does indicate a change, fall back to a content-hash
+                // comparison (only possible for full reads) so formatter-style
+                // touches that don't change bytes still allow the edit.
+                const readState = readRegistry.getState(filePath);
+                let originalBuffer;
+                if (readState) {
+                    const currentStat = await fs.promises.stat(filePath);
+                    if (currentStat.mtimeMs > readState.timestamp) {
+                        let contentUnchanged = false;
+                        if (readState.contentHash) {
+                            originalBuffer = await fs.promises.readFile(filePath);
+                            const currentHash = crypto.createHash('sha256')
+                                .update(originalBuffer).digest('hex');
+                            contentUnchanged = currentHash === readState.contentHash;
+                        }
+                        if (!contentUnchanged) {
+                            readRegistry.invalidate(filePath);
+                            return noChange(filePath, oldString, newString, replaceAll, 'File was modified since last Read. Read the file again before editing.');
+                        }
+                    }
+                }
+                // Read the file content (reusing the buffer if we already loaded it
+                // for the content-hash fallback).
+                const originalContent = originalBuffer
+                    ? originalBuffer.toString('utf8')
+                    : await fs.promises.readFile(filePath, 'utf8');
+                // Normalize line endings for matching: \r\n -> \n
+                // We'll do matching on normalized content but track whether the
+                // original had \r\n so we can preserve the original style.
+                const hadCRLF = originalContent.includes('\r\n');
+                const normalizedContent = originalContent.replace(/\r\n/g, '\n');
+                const normalizedOldString = oldString.replace(/\r\n/g, '\n');
+                const normalizedNewString = newString.replace(/\r\n/g, '\n');
+                // Resolve the match via the tiered cascade (see edit-matcher.ts):
+                //   tier 1: exact                 — substring indexOf
+                //   tier 2: line-trimmed           — tolerates trailing whitespace
+                //   tier 3: indentation-flexible   — tolerates leading indent delta
+                // replace_all semantics apply only to tier 1; tier 2 and tier 3
+                // always resolve to a single replacement (ambiguity there rejects).
+                const match = findMatch(normalizedContent, normalizedOldString);
+                if (match.kind === 'none') {
+                    const hint = findNearestMatch(normalizedContent, normalizedOldString);
+                    const text = hint
+                        ? `The specified text was not found in the file.\n\nNearest match in ${path.basename(filePath)}:\n${hint.snippet}`
+                        : 'The specified text was not found in the file.';
+                    return noChange(filePath, oldString, newString, replaceAll, text, originalContent);
+                }
+                if (match.kind === 'ambiguous') {
+                    const tolerance = match.tier === 'line-trimmed'
+                        ? 'trailing-whitespace tolerance'
+                        : 'indentation tolerance';
+                    const lines = match.matchLines.join(', ');
+                    const suffix = match.count > match.matchLines.length ? ' (first 3 shown)' : '';
+                    return {
+                        content: [{
+                                type: 'text',
+                                text: `Found ${match.count} possible matches on lines ${lines}${suffix} via ${tolerance}. ` +
+                                    'No exact match exists. Tighten old_string to uniquely identify the edit location.',
+                            }],
+                        details: {
+                            filePath, oldString, newString,
+                            replacementCount: 0, replaceAll, diff: [], originalContent,
+                        },
+                    };
+                }
+                if (match.kind === 'exact' && !replaceAll && match.count > 1) {
+                    const lines = match.matchLines.join(', ');
+                    const suffix = match.count > match.matchLines.length ? ' (first 3 shown)' : '';
+                    return {
+                        content: [{
+                                type: 'text',
+                                text: `Found ${match.count} exact matches on lines ${lines}${suffix}. ` +
+                                    'Provide more surrounding context to uniquely identify the edit location, or pass replace_all: true.',
+                            }],
+                        details: {
+                            filePath, oldString, newString,
+                            replacementCount: 0, replaceAll, diff: [], originalContent,
+                        },
+                    };
+                }
+                const applied = applyReplacement(match, normalizedContent, normalizedOldString, normalizedNewString, replaceAll);
+                if (!applied) {
+                    // Unreachable: above guards cover 'none' and 'ambiguous'. Treat
+                    // as a programming error rather than silently succeeding.
+                    throw new Error(`Unexpected match kind: ${match.kind}`);
+                }
+                const newNormalizedContent = applied.newContent;
+                const replacementCount = applied.replacementCount;
+                const matchTier = applied.tier;
+                // Restore original line ending style if it was CRLF
+                const finalContent = hadCRLF
+                    ? newNormalizedContent.replace(/\n/g, '\r\n')
+                    : newNormalizedContent;
+                // Compute diff
+                const diff = computeDiff(originalContent, finalContent);
+                // Atomic write: write to temp file, then rename
+                const tempPath = path.join(path.dirname(filePath), `.edit-${crypto.randomUUID()}.tmp`);
+                try {
+                    await fs.promises.writeFile(tempPath, finalContent, 'utf8');
+                    try {
+                        await fs.promises.rename(tempPath, filePath);
+                    }
+                    catch {
+                        // Rename may fail on Windows if target is open. Fall back to direct write.
+                        await fs.promises.writeFile(filePath, finalContent, 'utf8');
+                        try {
+                            await fs.promises.unlink(tempPath);
+                        }
+                        catch { /* ignore */ }
+                    }
+                }
+                catch (writeErr) {
+                    try {
+                        await fs.promises.unlink(tempPath);
+                    }
+                    catch { /* ignore */ }
+                    throw writeErr;
+                }
+                // Refresh read state: the agent's own edit is authoritative knowledge
+                // of current file contents, so subsequent edits don't require a re-read.
+                // We record the new mtime and a content hash of what we just wrote so
+                // external modifications still trigger the freshness check above.
+                // Also capture an EditHistory snapshot (when enabled) so UndoEdit
+                // can restore the prior contents while being able to detect
+                // post-edit external modifications.
+                try {
+                    const postStat = await fs.promises.stat(filePath);
+                    const postHash = crypto.createHash('sha256')
+                        .update(finalContent, 'utf8').digest('hex');
+                    readRegistry.markRead(filePath, {
+                        timestamp: postStat.mtimeMs,
+                        contentHash: postHash,
+                    });
+                    editHistory?.record(filePath, {
+                        originalContent,
+                        postMutationMtimeMs: postStat.mtimeMs,
+                        postMutationContentHash: postHash,
+                        source: 'Edit',
+                    });
+                }
+                catch {
+                    readRegistry.invalidate(filePath);
+                }
+                const plural = replacementCount === 1 ? 'replacement' : 'replacements';
+                const tierSuffix = matchTier === 'line-trimmed'
+                    ? ' (matched after trailing-whitespace tolerance)'
+                    : matchTier === 'indentation-flexible'
+                        ? ' (matched after indentation tolerance)'
+                        : '';
+                return {
+                    content: [{
+                            type: 'text',
+                            text: `Made ${replacementCount} ${plural} in ${filePath}${tierSuffix}`,
+                        }],
+                    details: {
+                        filePath, oldString, newString,
+                        replacementCount, replaceAll, diff, originalContent,
+                        matchTier,
+                    },
+                };
+            }
+            finally {
+                release?.();
+            }
+        },
+    };
+    return attachRuntimeAwareTool(tool, {
+        toolKind: 'Edit',
+        cloneForRuntime: (runtime) => createEditTool({
+            ...config,
+            runtime,
+            readRegistry: runtime.readRegistry,
+            fileMutationLock: runtime.fileMutationLock,
+            editHistory: runtime.editHistory,
+        }),
+    });
+}
+//# sourceMappingURL=edit.js.map

package/dist/tools/edit.js.map

@@ -0,0 +1 @@
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package/dist/tools/glob.d.ts

@@ -0,0 +1,34 @@
+/**
+ * Glob tool: find files by name pattern matching.
+ *
+ * Uses fast-glob for pattern matching and sorts results by
+ * modification time (newest first). Respects .gitignore rules.
+ *
+ * Reference: docs/cortex/tools/glob.md
+ */
+import { Type, type Static } from 'typebox';
+import type { ToolContentDetails } from '../types.js';
+export declare const GlobParams: Type.TObject<{
+    pattern: Type.TString;
+    path: Type.TOptional<Type.TString>;
+}>;
+export type GlobParamsType = Static<typeof GlobParams>;
+export interface GlobDetails {
+    totalCount: number;
+    truncated: boolean;
+    durationMs: number;
+    searchPath: string;
+}
+export interface GlobToolConfig {
+    /** Default search directory when no path param is given. */
+    defaultCwd: string;
+    /** Whether to respect .gitignore. Default: true. */
+    respectGitignore?: boolean | undefined;
+}
+export declare function createGlobTool(config: GlobToolConfig): {
+    name: string;
+    description: string;
+    parameters: typeof GlobParams;
+    execute: (params: GlobParamsType) => Promise<ToolContentDetails<GlobDetails>>;
+};
+//# sourceMappingURL=glob.d.ts.map

package/dist/tools/glob.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"glob.d.ts","sourceRoot":"","sources":["../../src/tools/glob.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAIH,OAAO,EAAE,IAAI,EAAE,KAAK,MAAM,EAAE,MAAM,SAAS,CAAC;AAC5C,OAAO,KAAK,EAAE,kBAAkB,EAAE,MAAM,aAAa,CAAC;AAUtD,eAAO,MAAM,UAAU;;;EAKrB,CAAC;AAEH,MAAM,MAAM,cAAc,GAAG,MAAM,CAAC,OAAO,UAAU,CAAC,CAAC;AAMvD,MAAM,WAAW,WAAW;IAC1B,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,OAAO,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;IACnB,UAAU,EAAE,MAAM,CAAC;CACpB;AAYD,MAAM,WAAW,cAAc;IAC7B,4DAA4D;IAC5D,UAAU,EAAE,MAAM,CAAC;IACnB,oDAAoD;IACpD,gBAAgB,CAAC,EAAE,OAAO,GAAG,SAAS,CAAC;CACxC;AAoJD,wBAAgB,cAAc,CAAC,MAAM,EAAE,cAAc,GAAG;IACtD,IAAI,EAAE,MAAM,CAAC;IACb,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,OAAO,UAAU,CAAC;IAC9B,OAAO,EAAE,CAAC,MAAM,EAAE,cAAc,KAAK,OAAO,CAAC,kBAAkB,CAAC,WAAW,CAAC,CAAC,CAAC;CAC/E,CAuHA"}