@animalabs/agent-framework 0.21.1 → 0.22.1

package/dist/src/modules/workspace/reconcile.js.map

@@ -0,0 +1 @@
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package/dist/src/modules/workspace/sync.d.ts

@@ -1,66 +1,13 @@
 /**
- * Sync logic between filesystem and Chronicle tree state.
- *
- * Two directions:
- * - syncFromFs: filesystem → Chronicle (user changes)
- * - materializeToFs: Chronicle → filesystem (agent changes)
+ * Shared helpers for moving content between the filesystem and the Chronicle
+ * tree. The rules for when content moves — the three-way rule over disk, the
+ * store and disk-agreement evidence — live in reconcile.ts, and how disk is
+ * observed (containment, symlinks, walks) in observe.ts.
  */
-import type { JsStore } from '@animalabs/chronicle';
-import type { MountState } from './types.js';
 export declare const DEFAULT_MAX_FILE_SIZE: number;
 /**
- * Hash file content to a full SHA-256 hex string.
- * Must match Chronicle's storeBlob() hash format (64-char hex).
+ * Hash content to a full SHA-256 hex string.
+ * Matches Chronicle's storeBlob() hash format (64-char hex).
  */
 export declare function hashContent(content: string | Buffer): string;
-/**
- * Check if content appears to be binary.
- */
-export interface SkippedFile {
-    /** Relative path of the file that was not synced */
-    path: string;
-    /** Why, in words the resident can act on */
-    reason: string;
-}
-export declare function isBinary(buffer: Buffer): boolean;
-export interface ConflictInfo {
-    /** Relative path of the conflicted file */
-    path: string;
-    /** Blob hash of the agent's version (retrievable via store.getBlob()) */
-    agentBlobHash: string;
-}
-export type SyncOp = 'created' | 'modified' | 'deleted';
-export interface SyncedPath {
-    path: string;
-    op: SyncOp;
-}
-export interface SyncResult {
-    /** Paths that were synced, tagged with the op detected against tree state */
-    synced: SyncedPath[];
-    /** Paths that conflicted (both agent and user modified) — filesystem wins */
-    conflicts: ConflictInfo[];
-    /** Paths that were skipped, each with the reason — a silently skipped file
-     *  is indistinguishable from one that synced cleanly, which is how a
-     *  resident ends up believing a file is in their workspace when it never
-     *  arrived. */
-    skipped: SkippedFile[];
-}
-/**
- * Sync filesystem changes into Chronicle tree state.
- *
- * @param store Chronicle store
- * @param mount Mount state
- * @param paths Specific paths to sync (relative to mount). If empty, walks the directory.
- * @returns Sync result with synced/conflicted/skipped paths
- */
-export declare function syncFromFs(store: JsStore, mount: MountState, paths?: string[]): Promise<SyncResult>;
-/**
- * Materialize Chronicle tree state to filesystem.
- *
- * @param store Chronicle store
- * @param mount Mount state
- * @param paths Specific paths to materialize. If undefined, materializes all changed since last.
- * @returns List of paths that were written
- */
-export declare function materializeToFs(store: JsStore, mount: MountState, paths?: string[]): Promise<string[]>;
 //# sourceMappingURL=sync.d.ts.map

package/dist/src/modules/workspace/sync.d.ts.map

@@ -1 +1 @@
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package/dist/src/modules/workspace/sync.js

@@ -1,269 +1,18 @@
 /**
- * Sync logic between filesystem and Chronicle tree state.
- *
- * Two directions:
- * - syncFromFs: filesystem → Chronicle (user changes)
- * - materializeToFs: Chronicle → filesystem (agent changes)
+ * Shared helpers for moving content between the filesystem and the Chronicle
+ * tree. The rules for when content moves — the three-way rule over disk, the
+ * store and disk-agreement evidence — live in reconcile.ts, and how disk is
+ * observed (containment, symlinks, walks) in observe.ts.
  */
 import { createHash } from 'node:crypto';
-import { readFile, writeFile, mkdir, readdir, stat, access } from 'node:fs/promises';
-import { join, dirname, relative, resolve, sep } from 'node:path';
 export const DEFAULT_MAX_FILE_SIZE = 5 * 1024 * 1024; // 5MB
 /**
- * Resolve a relative path within a mount and verify it doesn't escape.
- * Returns the absolute path, or null if the path is outside the mount.
- */
-function safePath(mountPath, relativePath) {
-    // Compare with the PLATFORM separator: resolve() emits backslashes on
-    // Windows, so a '/'-suffixed root never prefix-matches there and every
-    // in-mount path was reported as outside the mount.
-    const resolved = resolve(mountPath, relativePath);
-    const root = mountPath.endsWith(sep) ? mountPath : mountPath + sep;
-    if (resolved !== mountPath && !resolved.startsWith(root)) {
-        return null;
-    }
-    return resolved;
-}
-/**
- * Hash file content to a full SHA-256 hex string.
- * Must match Chronicle's storeBlob() hash format (64-char hex).
+ * Hash content to a full SHA-256 hex string.
+ * Matches Chronicle's storeBlob() hash format (64-char hex).
  */
 export function hashContent(content) {
     const hash = createHash('sha256');
     hash.update(content);
     return hash.digest('hex');
 }
-export function isBinary(buffer) {
-    // Check for null bytes in first 8KB
-    const check = buffer.subarray(0, 8192);
-    for (let i = 0; i < check.length; i++) {
-        if (check[i] === 0)
-            return true;
-    }
-    return false;
-}
-/**
- * Sync filesystem changes into Chronicle tree state.
- *
- * @param store Chronicle store
- * @param mount Mount state
- * @param paths Specific paths to sync (relative to mount). If empty, walks the directory.
- * @returns Sync result with synced/conflicted/skipped paths
- */
-export async function syncFromFs(store, mount, paths) {
-    const result = { synced: [], conflicts: [], skipped: [] };
-    const maxSize = mount.config.maxFileSize ?? DEFAULT_MAX_FILE_SIZE;
-    const filesToSync = paths ?? await walkDirectory(mount.config.path, mount.config.ignore ?? []);
-    for (const relativePath of filesToSync) {
-        const absolutePath = safePath(mount.config.path, relativePath);
-        if (!absolutePath) {
-            result.skipped.push({ path: relativePath, reason: 'path resolves outside the mount' });
-            continue;
-        }
-        try {
-            await access(absolutePath);
-        }
-        catch {
-            // File was deleted on disk — remove from tree
-            const existing = store.treeGet(mount.treeStateId, relativePath);
-            if (existing) {
-                store.treeRemove(mount.treeStateId, relativePath);
-                result.synced.push({ path: relativePath, op: 'deleted' });
-            }
-            continue;
-        }
-        try {
-            const fileStat = await stat(absolutePath);
-            if (!fileStat.isFile())
-                continue;
-            if (fileStat.size > maxSize) {
-                result.skipped.push({
-                    path: relativePath,
-                    reason: `too large: ${fileStat.size} bytes > maxFileSize ${maxSize}`,
-                });
-                continue;
-            }
-            const buffer = await readFile(absolutePath);
-            if (isBinary(buffer)) {
-                // Disk -> store sync is text-only, at ANY size: the tree stores text
-                // blobs. Binary that must live in the store has to be written through
-                // writeBinary; binary that is only passing through should be read with
-                // readBinaryFromDisk instead of synced at all.
-                result.skipped.push({
-                    path: relativePath,
-                    reason: 'binary file — disk sync stores text only (read it from disk, or write it via a binary-aware tool)',
-                });
-                continue;
-            }
-            const content = buffer.toString('utf-8');
-            const hash = hashContent(content);
-            // Check current tree state
-            const existing = store.treeGet(mount.treeStateId, relativePath);
-            if (existing && existing.blobHash === hash) {
-                // No change
-                continue;
-            }
-            // Store blob and update tree
-            const blobHash = store.storeBlob(Buffer.from(content, 'utf-8'), 'text/plain');
-            const entry = {
-                blobHash,
-                size: buffer.length,
-                mode: 0o644,
-            };
-            // Conflict detection: if the file existed in the tree AND the agent has
-            // modified it since last materialization, this is a genuine conflict
-            // (both agent and user changed the same file).
-            if (existing) {
-                const baselineHash = mount.materializedHashes.get(relativePath);
-                if (baselineHash && existing.blobHash !== baselineHash) {
-                    // Agent changed the tree entry since we last materialized — conflict.
-                    // Filesystem still wins, but agent's version is recoverable via agentBlobHash.
-                    result.conflicts.push({
-                        path: relativePath,
-                        agentBlobHash: existing.blobHash,
-                    });
-                }
-            }
-            store.treeSet(mount.treeStateId, relativePath, entry);
-            result.synced.push({ path: relativePath, op: existing ? 'modified' : 'created' });
-        }
-        catch (error) {
-            result.skipped.push({
-                path: relativePath,
-                reason: error instanceof Error ? error.message : String(error),
-            });
-        }
-    }
-    return result;
-}
-/**
- * Materialize Chronicle tree state to filesystem.
- *
- * @param store Chronicle store
- * @param mount Mount state
- * @param paths Specific paths to materialize. If undefined, materializes all changed since last.
- * @returns List of paths that were written
- */
-export async function materializeToFs(store, mount, paths) {
-    if (mount.config.mode === 'read-only') {
-        return [];
-    }
-    const written = [];
-    // Get changed files since last materialization
-    const currentSeq = store.currentSequence();
-    let filesToMaterialize;
-    if (paths) {
-        // Materialize specific paths
-        filesToMaterialize = [];
-        for (const p of paths) {
-            const entry = store.treeGet(mount.treeStateId, p);
-            if (entry) {
-                filesToMaterialize.push({ path: p, blobHash: entry.blobHash });
-            }
-        }
-    }
-    else if (mount.lastMaterializedSeq > 0) {
-        // Diff since last materialization
-        const changes = store.treeDiff(mount.treeStateId, mount.lastMaterializedSeq, currentSeq);
-        filesToMaterialize = changes
-            .filter(c => c.changeType === 'added' || c.changeType === 'modified')
-            .map(c => ({
-            path: c.path,
-            blobHash: c.newEntry.blobHash,
-        }));
-        // Handle removals
-        for (const change of changes) {
-            if (change.changeType === 'removed') {
-                // Don't delete from filesystem — just skip.
-                // Agent removing from tree doesn't mean delete user's file.
-            }
-        }
-    }
-    else {
-        // First materialization — materialize everything
-        const entries = store.treeList(mount.treeStateId);
-        filesToMaterialize = entries.map(e => ({
-            path: e.path,
-            blobHash: e.blobHash,
-        }));
-    }
-    for (const { path: relativePath, blobHash } of filesToMaterialize) {
-        const absolutePath = safePath(mount.config.path, relativePath);
-        if (!absolutePath)
-            continue; // Path traversal — skip silently
-        const blob = store.getBlob(blobHash);
-        if (!blob)
-            continue;
-        // Create parent directories
-        await mkdir(dirname(absolutePath), { recursive: true });
-        // Write file
-        await writeFile(absolutePath, blob);
-        written.push(relativePath);
-        // Record blob hash at materialization time for conflict detection
-        mount.materializedHashes.set(relativePath, blobHash);
-    }
-    mount.lastMaterializedSeq = currentSeq;
-    return written;
-}
-/**
- * Walk a directory recursively, respecting ignore patterns.
- */
-async function walkDirectory(basePath, ignorePatterns) {
-    const results = [];
-    const maxFiles = 5000; // Safety limit
-    async function walk(dir) {
-        if (results.length >= maxFiles)
-            return;
-        let entries;
-        try {
-            entries = await readdir(dir, { withFileTypes: true });
-        }
-        catch {
-            return;
-        }
-        for (const entry of entries) {
-            if (results.length >= maxFiles)
-                break;
-            const fullPath = join(dir, entry.name);
-            // Logical workspace paths are '/'-separated everywhere (mount-prefixed
-            // paths, chronicle tree paths); node's relative() emits backslashes on
-            // Windows, so normalize. No-op on POSIX (sep === '/').
-            const relativePath = relative(basePath, fullPath).split(sep).join('/');
-            // Check ignore patterns (simple glob matching)
-            if (shouldIgnore(relativePath, entry.name, ignorePatterns))
-                continue;
-            if (entry.isFile()) {
-                results.push(relativePath);
-            }
-            else if (entry.isDirectory()) {
-                await walk(fullPath);
-            }
-        }
-    }
-    await walk(basePath);
-    return results;
-}
-/**
- * Simple ignore pattern matching.
- */
-function shouldIgnore(relativePath, name, patterns) {
-    for (const pattern of patterns) {
-        // Exact name match (e.g., ".git", "node_modules")
-        if (pattern === name)
-            return true;
-        // Simple ** glob: "node_modules/**" matches anything under node_modules
-        if (pattern.endsWith('/**')) {
-            const prefix = pattern.slice(0, -3);
-            if (relativePath.startsWith(prefix + '/') || relativePath === prefix)
-                return true;
-        }
-        // Extension glob: "*.pyc" matches any .pyc file
-        if (pattern.startsWith('*.')) {
-            const ext = pattern.slice(1);
-            if (name.endsWith(ext))
-                return true;
-        }
-    }
-    return false;
-}
 //# sourceMappingURL=sync.js.map

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+{"version":3,"file":"sync.js","sourceRoot":"","sources":["../../../../src/modules/workspace/sync.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,aAAa,CAAC;AAEzC,MAAM,CAAC,MAAM,qBAAqB,GAAG,CAAC,GAAG,IAAI,GAAG,IAAI,CAAC,CAAC,MAAM;AAE5D;;;GAGG;AACH,MAAM,UAAU,WAAW,CAAC,OAAwB;IAClD,MAAM,IAAI,GAAG,UAAU,CAAC,QAAQ,CAAC,CAAC;IAClC,IAAI,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC;IACrB,OAAO,IAAI,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;AAC5B,CAAC"}

package/dist/src/modules/workspace/types.d.ts

@@ -13,9 +13,13 @@ export interface MountConfig {
     mode: 'read-write' | 'read-only';
     /**
      * Watch mode for filesystem changes:
-     * - 'always': chokidar watches continuously, syncs on debounce
-     * - 'on-agent-action': sync from filesystem after each agent tool call
-     * - 'never': fully virtual, no automatic filesystem reads
+     * - 'always': chokidar watches continuously; each event re-observes its paths
+     * - 'on-agent-action': after each completed agent tool batch, the mount is
+     *   scanned, and the agent's next inference waits for that scan up to
+     *   `agentActionScanDeadlineMs`; a scan that takes longer finishes while
+     *   the round goes on
+     * - 'never': no background reads; listings and lazy reads still observe
+     *   the paths they show
      */
     watch?: 'always' | 'on-agent-action' | 'never';
     /** Debounce window in ms for watch: 'always' mode (default: 300) */
@@ -65,25 +69,70 @@ export interface WorkspaceConfig {
     deltaSnapshotEvery?: number;
     /** Full snapshot frequency for tree states (default: 10) */
     fullSnapshotEvery?: number;
+    /**
+     * How long the scan of `watch: 'on-agent-action'` mounts after a tool batch
+     * may hold the agent's next inference, in ms (default: 20000). A scan that
+     * takes longer finishes in the background; the miss is recorded on the
+     * mount's status and pushed as a `workspace:agent-action-scan-incomplete`
+     * event. So is a scan that finished without observing everything, with the
+     * regions it couldn't (`incomplete`). While a scan that outlasted its
+     * deadline still runs, later batches aren't held: their scan is queued
+     * after it, and the miss is recorded at once. The framework bounds every
+     * module's batch hook at 30 s, so a deadline above 29 s is lowered to 29 s,
+     * with a warning, for the workspace's own miss to come first.
+     */
+    agentActionScanDeadlineMs?: number;
 }
 /**
- * Per-mount runtime state (not persisted — rebuilt on start).
+ * Per-mount runtime state (not persisted — rebuilt on start). What disk last
+ * agreed with lives in the module's disk-agreement journal (global chronicle
+ * records), and branch-local intent in `intentTreeStateId`.
  */
 export interface MountState {
     /** The mount config */
     config: MountConfig;
     /** Tree state ID in Chronicle */
     treeStateId: string;
+    /** Branch-local intent (tombstones, store origin, conflicts) for this mount's paths */
+    intentTreeStateId: string;
     /** Sequence number of last materialization */
     lastMaterializedSeq: number;
     /** Paths currently suppressed from watcher (recently materialized) */
     suppressedPaths: Set<string>;
-    /** Whether initial lazy sync has been completed */
+    /** Whether a full scan of the mount has completed this session */
     initialSyncDone: boolean;
     /** Branch ID that was active when this mount last materialized */
     lastMaterializedBranchId: string | null;
-    /** Per-file hash at time of last materialization — baseline for conflict detection */
-    materializedHashes: Map<string, string>;
+    /**
+     * The last on-agent-action scan, as of `at`: `complete` when it has
+     * finished at all, `withinDeadline` when it finished before the deadline
+     * released the round, `reason` for a miss or a failure, and `incomplete`
+     * for the regions a finished scan couldn't observe (each also pushed as a
+     * `workspace:agent-action-scan-incomplete` event).
+     */
+    lastAgentActionScan?: {
+        at: number;
+        complete: boolean;
+        withinDeadline: boolean;
+        reason?: string;
+        incomplete?: Array<{
+            path: string;
+            reason: string;
+        }>;
+    };
+    /**
+     * The after-batch scan queued behind the mount's running work, not yet
+     * started: later batches share it, since it starts after their tools ran.
+     */
+    agentActionScanWaiting?: AgentActionScan;
+    /**
+     * The mount's newest after-batch scan. Only its outcome is put on
+     * `lastAgentActionScan`: one queued behind an older scan describes a later
+     * batch, which the older scan's outcome mustn't speak for.
+     */
+    agentActionScanLatest?: AgentActionScan;
+    /** A scan that outlasted a batch's deadline, while it still runs. */
+    agentActionScanLate?: Promise<unknown>;
     /**
      * Wall-clock time chokidar emitted `ready` for this mount, or null if the
      * watcher hasn't finished its initial scan. null after session start =
@@ -169,6 +218,13 @@ export interface GrepInput {
     /** Context lines after match */
     contextAfter?: number;
 }
+/** One after-batch scan of a mount, shared by the batches that wait for it. */
+export interface AgentActionScan {
+    /** Whether some batch stopped waiting for it (its deadline passed, or an earlier scan still ran late). */
+    late: boolean;
+    /** Settles, never rejects, once its outcome is recorded: on status if it is the newest, as events either way. */
+    settled: Promise<void>;
+}
 export interface StatusInput {
     /** Specific mount to check (optional — defaults to all) */
     mount?: string;
@@ -180,17 +236,26 @@ export interface MaterializeInput {
     mount?: string;
     /**
      * Materialize even when the current branch has genuinely diverged from the
-     * branch last materialized to disk (default: false). Not needed for linear
-     * continuations (child branches forked at or after the last materialized
-     * point) — those pass the guard automatically.
+     * branch last materialized to disk, and overwrite a disk copy in conflict
+     * (default: false). Not needed for linear continuations (child branches
+     * forked at or after the last materialized point) — those pass the guard
+     * automatically.
      */
     force?: boolean;
+    /**
+     * Also delete from disk the files deleted in the workspace whose disk copy
+     * is still one the workspace holds (default: false). With `force`, also
+     * those whose disk copy changed since.
+     */
+    applyDeletions?: boolean;
 }
 export interface SyncInput {
     /** Specific file or directory path to sync (optional — defaults to all) */
     path?: string;
     /** Specific mount (optional — defaults to all) */
     mount?: string;
+    /** Take each mount's root as it is now, when it isn't the directory disk last agreed with. */
+    acceptRoot?: boolean;
 }
 export type WorkspaceFsOp = 'created' | 'modified' | 'deleted';
 /**
@@ -216,6 +281,8 @@ export interface WorkspaceDeletedEvent {
     type: 'workspace:deleted';
     paths: string[];
     mount: string;
+    /** Paths deleted on disk whose newer workspace version was kept as a conflict. */
+    conflicts?: string[];
     [key: string]: unknown;
 }
 export interface WorkspaceMountedEvent {

package/dist/src/modules/workspace/types.d.ts.map

@@ -1 +1 @@
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