@andes/fhir 1.12.0 → 1.12.1-beta.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (103) hide show
  1. package/{src → dist}/data/patient.json +192 -192
  2. package/dist/{src/helpers → helpers}/patientFactory.js +35 -31
  3. package/dist/{src/lib → lib}/allergyIntolerance.js +39 -40
  4. package/dist/{src/lib → lib}/bundle.js +25 -26
  5. package/dist/{src/lib → lib}/composition.js +152 -152
  6. package/dist/{src/lib → lib}/condition.js +79 -80
  7. package/dist/{src/lib → lib}/config.js +27 -21
  8. package/dist/lib/config.test.js +19 -0
  9. package/dist/{src/lib → lib}/device.js +38 -39
  10. package/dist/lib/device.test.js +9 -0
  11. package/dist/{src/lib → lib}/document-reference.js +106 -107
  12. package/dist/{src/lib → lib}/immunization.js +67 -68
  13. package/{src/lib/medication.ts → dist/lib/medication.js} +64 -61
  14. package/{src/lib/medicationRequest.ts → dist/lib/medicationRequest.js} +103 -100
  15. package/dist/{src/lib → lib}/medicationStatement.js +55 -56
  16. package/dist/lib/organization.js +93 -0
  17. package/dist/lib/patient.js +465 -0
  18. package/dist/{src/lib → lib}/patient.test.js +132 -113
  19. package/dist/lib/practitioner.js +186 -0
  20. package/dist/types/andes/organization.types.js +2 -0
  21. package/dist/types/andes/patient.types.js +2 -0
  22. package/dist/types/andes/practitioner.types.js +3 -0
  23. package/package.json +53 -44
  24. package/.circleci/config.yml +0 -72
  25. package/.editorconfig +0 -14
  26. package/.env.example +0 -2
  27. package/.gitattributes +0 -1
  28. package/.github/CODEOWNERS +0 -1
  29. package/.github/labeler.yml +0 -11
  30. package/.github/pull_request_template.md +0 -28
  31. package/.github/workflows/build_test.yml +0 -14
  32. package/.github/workflows/has_conflicts.yml +0 -13
  33. package/.vscode/settings.json +0 -2
  34. package/CHANGELOG.md +0 -351
  35. package/coverage/clover.xml +0 -209
  36. package/coverage/coverage-final.json +0 -5
  37. package/coverage/lcov-report/base.css +0 -224
  38. package/coverage/lcov-report/block-navigation.js +0 -87
  39. package/coverage/lcov-report/config.ts.html +0 -136
  40. package/coverage/lcov-report/device.ts.html +0 -193
  41. package/coverage/lcov-report/favicon.png +0 -0
  42. package/coverage/lcov-report/helpers/index.html +0 -116
  43. package/coverage/lcov-report/helpers/patientFactory.ts.html +0 -124
  44. package/coverage/lcov-report/index.html +0 -131
  45. package/coverage/lcov-report/lib/config.ts.html +0 -136
  46. package/coverage/lcov-report/lib/device.ts.html +0 -193
  47. package/coverage/lcov-report/lib/index.html +0 -146
  48. package/coverage/lcov-report/lib/patient.ts.html +0 -1318
  49. package/coverage/lcov-report/patient.ts.html +0 -1207
  50. package/coverage/lcov-report/prettify.css +0 -1
  51. package/coverage/lcov-report/prettify.js +0 -2
  52. package/coverage/lcov-report/sort-arrow-sprite.png +0 -0
  53. package/coverage/lcov-report/sorter.js +0 -210
  54. package/coverage/lcov.info +0 -425
  55. package/dist/index.js +0 -52
  56. package/dist/index.js.map +0 -1
  57. package/dist/src/data/patient.json +0 -192
  58. package/dist/src/helpers/patientFactory.js.map +0 -1
  59. package/dist/src/lib/allergyIntolerance.js.map +0 -1
  60. package/dist/src/lib/bundle.js.map +0 -1
  61. package/dist/src/lib/composition.js.map +0 -1
  62. package/dist/src/lib/condition.js.map +0 -1
  63. package/dist/src/lib/config.js.map +0 -1
  64. package/dist/src/lib/config.test.js +0 -13
  65. package/dist/src/lib/config.test.js.map +0 -1
  66. package/dist/src/lib/device.js.map +0 -1
  67. package/dist/src/lib/device.test.js +0 -10
  68. package/dist/src/lib/device.test.js.map +0 -1
  69. package/dist/src/lib/document-reference.js.map +0 -1
  70. package/dist/src/lib/immunization.js.map +0 -1
  71. package/dist/src/lib/medication.js +0 -65
  72. package/dist/src/lib/medication.js.map +0 -1
  73. package/dist/src/lib/medicationRequest.js +0 -103
  74. package/dist/src/lib/medicationRequest.js.map +0 -1
  75. package/dist/src/lib/medicationStatement.js.map +0 -1
  76. package/dist/src/lib/organization.js +0 -91
  77. package/dist/src/lib/organization.js.map +0 -1
  78. package/dist/src/lib/patient.js +0 -397
  79. package/dist/src/lib/patient.js.map +0 -1
  80. package/dist/src/lib/patient.test.js.map +0 -1
  81. package/dist/src/lib/practitioner.js +0 -161
  82. package/dist/src/lib/practitioner.js.map +0 -1
  83. package/index.ts +0 -30
  84. package/jest.config.js +0 -12
  85. package/release.config.js +0 -74
  86. package/src/helpers/patientFactory.ts +0 -13
  87. package/src/lib/allergyIntolerance.ts +0 -36
  88. package/src/lib/bundle.ts +0 -19
  89. package/src/lib/composition.ts +0 -153
  90. package/src/lib/condition.ts +0 -80
  91. package/src/lib/config.test.ts +0 -13
  92. package/src/lib/config.ts +0 -17
  93. package/src/lib/device.test.ts +0 -9
  94. package/src/lib/device.ts +0 -36
  95. package/src/lib/document-reference.ts +0 -102
  96. package/src/lib/immunization.ts +0 -64
  97. package/src/lib/medicationStatement.ts +0 -52
  98. package/src/lib/organization.ts +0 -89
  99. package/src/lib/patient.test.ts +0 -101
  100. package/src/lib/patient.ts +0 -411
  101. package/src/lib/practitioner.ts +0 -157
  102. package/tsconfig.test.json +0 -18
  103. package/tslint.json +0 -139
@@ -0,0 +1,465 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.verify = exports.decode = exports.encode = void 0;
4
+ const config_1 = require("./config");
5
+ /**
6
+ * Helpers
7
+ */
8
+ function formatDateOnly(value) {
9
+ if (!value)
10
+ return undefined;
11
+ const d = typeof value === 'string' ? new Date(value) : value;
12
+ if (isNaN(d.getTime()))
13
+ return undefined;
14
+ return d.toISOString().slice(0, 10);
15
+ }
16
+ function formatDateTime(value) {
17
+ if (!value)
18
+ return undefined;
19
+ const d = typeof value === 'string' ? new Date(value) : value;
20
+ if (isNaN(d.getTime()))
21
+ return undefined;
22
+ return d.toISOString();
23
+ }
24
+ function mapGeneroFHIRToAndes(gender) {
25
+ switch (gender) {
26
+ case 'female':
27
+ return 'femenino';
28
+ case 'male':
29
+ return 'masculino';
30
+ case 'other':
31
+ return 'otro';
32
+ default:
33
+ return undefined;
34
+ }
35
+ }
36
+ function mapSexoAndesToGenderFHIR(sexo) {
37
+ switch (sexo) {
38
+ case 'femenino':
39
+ return 'female';
40
+ case 'masculino':
41
+ return 'male';
42
+ case 'otro':
43
+ return 'other';
44
+ default:
45
+ return undefined; // unknown
46
+ }
47
+ }
48
+ function buildGenderIdentityExtension(genero) {
49
+ if (!genero) {
50
+ return [];
51
+ }
52
+ return [{
53
+ url: 'http://hl7.org/fhir/StructureDefinition/individual-genderIdentity',
54
+ valueCode: genero
55
+ }];
56
+ }
57
+ function buildStatusExtension(estado) {
58
+ const value = estado ?? 'temporal';
59
+ return [{
60
+ url: 'andes.gob.ar/fhir/StructureDefinition/patient-status',
61
+ valueCode: value
62
+ }];
63
+ }
64
+ function mapEstadoCivilAndesToFHIR(estadoCivil) {
65
+ switch (estadoCivil) {
66
+ case 'casado':
67
+ return 'Married';
68
+ case 'divorciado':
69
+ return 'Divorced';
70
+ case 'viudo':
71
+ return 'Widowed';
72
+ case 'soltero':
73
+ return 'unmarried';
74
+ default:
75
+ return 'unknown';
76
+ }
77
+ }
78
+ function mapEstadoCivilFHIRToAndes(estadoCivil) {
79
+ switch (estadoCivil) {
80
+ case 'Married':
81
+ return 'casado';
82
+ case 'Divorced':
83
+ return 'divorciado';
84
+ case 'Widowed':
85
+ return 'viudo';
86
+ case 'unmarried':
87
+ return 'soltero';
88
+ default:
89
+ return 'otro';
90
+ }
91
+ }
92
+ /**
93
+ * Encode a patient from ANDES to FHIR
94
+ */
95
+ function encode(patient) {
96
+ if (!patient) {
97
+ return null;
98
+ }
99
+ // Identificadores
100
+ const identificadores = [];
101
+ // Dominio local (id de ANDES o equivalente)
102
+ identificadores.push({
103
+ system: (0, config_1.getDominio)(),
104
+ value: patient._id ?? patient.id
105
+ });
106
+ if (patient.documento) {
107
+ identificadores.push({
108
+ system: 'http://www.renaper.gob.ar/dni',
109
+ value: patient.documento
110
+ });
111
+ }
112
+ if (patient.cuil) {
113
+ identificadores.push({
114
+ system: 'http://www.renaper.gob.ar/cuil',
115
+ value: patient.cuil
116
+ });
117
+ }
118
+ if (patient.numeroIdentificacion) {
119
+ if (patient.tipoIdentificacion === 'dni extranjero') {
120
+ identificadores.push({
121
+ system: 'andes.gob.ar/sid/foreign-id',
122
+ value: patient.numeroIdentificacion
123
+ });
124
+ }
125
+ if (patient.tipoIdentificacion === 'pasaporte') {
126
+ identificadores.push({
127
+ system: 'andes.gob.ar/sid/passport',
128
+ value: patient.numeroIdentificacion
129
+ });
130
+ }
131
+ }
132
+ // Contactos → telecom
133
+ const contactos = (patient.contacto ?? [])
134
+ .filter((c) => !!c.valor)
135
+ .map((unContacto) => {
136
+ const cont = {
137
+ value: unContacto.valor,
138
+ rank: unContacto.ranking
139
+ };
140
+ switch (unContacto.tipo) {
141
+ case 'fijo':
142
+ case 'celular':
143
+ cont.system = 'phone';
144
+ break;
145
+ case 'email':
146
+ cont.system = 'email';
147
+ break;
148
+ }
149
+ return cont;
150
+ });
151
+ // Direcciones → address
152
+ const direcciones = (patient.direccion ?? [])
153
+ .filter((dir) => !!dir.ubicacion?.localidad)
154
+ .map((unaDireccion) => {
155
+ const city = typeof unaDireccion.ubicacion.localidad === 'object'
156
+ ? unaDireccion.ubicacion.localidad?.nombre
157
+ : unaDireccion.ubicacion.localidad;
158
+ const state = typeof unaDireccion.ubicacion.provincia === 'object'
159
+ ? unaDireccion.ubicacion.provincia?.nombre
160
+ : unaDireccion.ubicacion.provincia;
161
+ const country = typeof unaDireccion.ubicacion.pais === 'object'
162
+ ? unaDireccion.ubicacion.pais?.nombre
163
+ : unaDireccion.ubicacion.pais;
164
+ return {
165
+ postalCode: unaDireccion.codigoPostal ?? '',
166
+ line: [unaDireccion.valor],
167
+ city: city ?? '',
168
+ state: state ?? '',
169
+ country: country ?? ''
170
+ };
171
+ });
172
+ // Relaciones → contact
173
+ const relacionesFHIR = (patient.relaciones ?? [])
174
+ .filter((r) => !!r.relacion)
175
+ .map((unaRelacion) => {
176
+ return {
177
+ relationship: [{
178
+ text: unaRelacion.relacion.nombre
179
+ }],
180
+ name: {
181
+ family: unaRelacion.apellido,
182
+ given: unaRelacion.nombre.split(' ')
183
+ }
184
+ };
185
+ });
186
+ // Género
187
+ // const generoFHIR = mapGeneroAndesToFHIR(patient.genero ?? patient.sexo);
188
+ const generoFHIR = mapSexoAndesToGenderFHIR(patient.sexo ?? patient.genero);
189
+ const genderIdentityExtensions = buildGenderIdentityExtension(patient.genero);
190
+ const statusExtensions = buildStatusExtension(patient.estado);
191
+ const birthDate = formatDateOnly(patient.fechaNacimiento);
192
+ const extensions = [...statusExtensions, ...genderIdentityExtensions];
193
+ const pacienteFHIR = {
194
+ resourceType: 'Patient',
195
+ id: patient._id ?? patient.id,
196
+ identifier: identificadores,
197
+ active: patient.activo ?? undefined,
198
+ name: [{
199
+ use: 'official',
200
+ family: patient.apellido,
201
+ given: patient.nombre.split(' '),
202
+ text: `${patient.nombre} ${patient.apellido}`
203
+ }],
204
+ gender: generoFHIR,
205
+ birthDate,
206
+ ...(extensions.length > 0 && { extension: extensions })
207
+ };
208
+ if (patient.fechaFallecimiento) {
209
+ const deceased = formatDateTime(patient.fechaFallecimiento);
210
+ if (deceased) {
211
+ pacienteFHIR.deceasedDateTime = deceased;
212
+ }
213
+ }
214
+ if (patient.estadoCivil) {
215
+ pacienteFHIR.maritalStatus = {
216
+ text: mapEstadoCivilAndesToFHIR(patient.estadoCivil)
217
+ };
218
+ }
219
+ if (patient.foto) {
220
+ pacienteFHIR.photo = [{ data: patient.foto }];
221
+ }
222
+ if (contactos.length > 0) {
223
+ pacienteFHIR.telecom = contactos;
224
+ }
225
+ if (direcciones.length > 0) {
226
+ pacienteFHIR.address = direcciones;
227
+ }
228
+ if (relacionesFHIR.length > 0) {
229
+ pacienteFHIR.contact = relacionesFHIR;
230
+ }
231
+ if (patient.createdBy?.organizacion) {
232
+ const managingOrganization = {
233
+ reference: patient.createdBy.organizacion.id,
234
+ display: patient.createdBy.organizacion.nombre
235
+ };
236
+ pacienteFHIR.managingOrganization = managingOrganization;
237
+ }
238
+ return pacienteFHIR;
239
+ }
240
+ exports.encode = encode;
241
+ /**
242
+ * Decode a patient from FHIR to ANDES
243
+ */
244
+ function decode(patient) {
245
+ let genero;
246
+ let sexo;
247
+ // Cuando el paciente viene por FHIR suponemos el valor del género
248
+ genero = mapGeneroFHIRToAndes(patient.gender);
249
+ sexo = genero;
250
+ function getValue(items, key) {
251
+ if (!items)
252
+ return undefined;
253
+ const element = items.find(el => el.system === key);
254
+ return element?.value;
255
+ }
256
+ const tiposIdentificacion = ['andes.gob.ar/sid/foreign-id', 'andes.gob.ar/sid/passport'];
257
+ const tipoAndes = ['dni extranjero', 'pasaporte'];
258
+ let tipoIdentificacion;
259
+ let numeroIdentificacion;
260
+ for (let i = 0; i < tiposIdentificacion.length; i++) {
261
+ const val = getValue(patient.identifier, tiposIdentificacion[i]);
262
+ if (val) {
263
+ tipoIdentificacion = tipoAndes[i];
264
+ numeroIdentificacion = val;
265
+ }
266
+ }
267
+ const firstName = patient.name?.[0];
268
+ const nombre = firstName
269
+ ? (firstName.given ?? []).join(' ').trim()
270
+ : '';
271
+ const apellido = firstName
272
+ ? (Array.isArray(firstName.family)
273
+ ? firstName.family.join(' ').trim()
274
+ : (firstName.family ?? ''))
275
+ : '';
276
+ const pacienteAndes = {
277
+ id: getValue(patient.identifier, (0, config_1.makeUrl)('Patient')) ?? patient.id,
278
+ documento: getValue(patient.identifier, 'http://www.renaper.gob.ar/dni'),
279
+ tipoIdentificacion,
280
+ numeroIdentificacion,
281
+ nombre,
282
+ apellido,
283
+ fechaNacimiento: patient.birthDate,
284
+ genero,
285
+ sexo,
286
+ estado: 'temporal'
287
+ };
288
+ const contactos = patient.telecom
289
+ ? patient.telecom.map((unContacto) => {
290
+ const cont = {
291
+ valor: unContacto.value,
292
+ ranking: unContacto.rank
293
+ };
294
+ switch (unContacto.system) {
295
+ case 'phone':
296
+ cont.tipo = 'celular';
297
+ break;
298
+ case 'email':
299
+ cont.tipo = 'email';
300
+ break;
301
+ }
302
+ return cont;
303
+ })
304
+ : [];
305
+ const relaciones = patient.contact
306
+ ? patient.contact.map((aContact) => {
307
+ const relText = aContact.relationship?.[0]?.text ?? '';
308
+ const givenName = (aContact.name?.given ?? []).join(' ').replace(',', ' ');
309
+ const familyName = Array.isArray(aContact.name?.family)
310
+ ? (aContact.name?.family).join(' ').replace(',', ' ')
311
+ : aContact.name?.family ?? '';
312
+ return {
313
+ relacion: { nombre: relText },
314
+ nombre: givenName,
315
+ apellido: familyName
316
+ };
317
+ })
318
+ : [];
319
+ if (patient.maritalStatus?.text) {
320
+ pacienteAndes.estadoCivil = mapEstadoCivilFHIRToAndes(patient.maritalStatus.text);
321
+ }
322
+ const direcciones = patient.address
323
+ ? patient.address.map((unaDireccion) => {
324
+ const valor = Array.isArray(unaDireccion.line)
325
+ ? (unaDireccion.line[0] ?? '')
326
+ : unaDireccion.line ?? '';
327
+ const dir = {
328
+ activo: true,
329
+ valor,
330
+ codigoPostal: unaDireccion.postalCode,
331
+ ubicacion: {
332
+ pais: unaDireccion.country,
333
+ provincia: unaDireccion.state,
334
+ localidad: unaDireccion.city
335
+ }
336
+ };
337
+ return dir;
338
+ })
339
+ : [];
340
+ pacienteAndes.direccion = direcciones;
341
+ if (patient.active !== undefined) {
342
+ pacienteAndes.activo = patient.active;
343
+ }
344
+ if (contactos.length > 0) {
345
+ pacienteAndes.contacto = contactos;
346
+ }
347
+ if (patient.photo && patient.photo.length > 0) {
348
+ pacienteAndes.foto = patient.photo[0].data;
349
+ }
350
+ if (relaciones.length > 0) {
351
+ pacienteAndes.relaciones = relaciones;
352
+ }
353
+ if (patient.managingOrganization) {
354
+ pacienteAndes.createdBy = {
355
+ organizacion: {
356
+ id: patient.managingOrganization.reference ?? '',
357
+ nombre: patient.managingOrganization.display ?? ''
358
+ }
359
+ };
360
+ }
361
+ return pacienteAndes;
362
+ }
363
+ exports.decode = decode;
364
+ /**
365
+ * Verify if a patient has a FHIR format
366
+ */
367
+ function verify(patient) {
368
+ let respuesta = true;
369
+ const fieldVerified = Object.keys(patient).every(pacienteFHIRFields);
370
+ if (fieldVerified) {
371
+ respuesta = ('resourceType' in patient) && patient.resourceType === 'Patient';
372
+ respuesta = respuesta && ('identifier' in patient);
373
+ if (patient.identifier?.length > 0) {
374
+ patient.identifier.forEach((anIdentifier) => {
375
+ respuesta = respuesta && Object.keys(anIdentifier).every(identifierFields);
376
+ });
377
+ }
378
+ patient.name?.forEach((aName) => {
379
+ respuesta = respuesta && validName(aName);
380
+ });
381
+ if (patient.active !== undefined) {
382
+ respuesta = respuesta && (typeof patient.active === 'boolean');
383
+ }
384
+ if (patient.telecom) {
385
+ patient.telecom.forEach((aTelecom) => {
386
+ respuesta = respuesta && Object.keys(aTelecom).every(telecomFields);
387
+ });
388
+ }
389
+ if (patient.gender) {
390
+ respuesta = respuesta && patient.gender.match('male|female|other|unknown') != null;
391
+ }
392
+ if (patient.birthDate) {
393
+ respuesta = respuesta && typeof patient.birthDate === 'string';
394
+ }
395
+ if (patient.deceasedDateTime) {
396
+ respuesta = respuesta && typeof patient.deceasedDateTime === 'string';
397
+ }
398
+ if (patient.address) {
399
+ patient.address.forEach((anAddress) => {
400
+ respuesta = respuesta && Object.keys(anAddress).every(addressFields);
401
+ });
402
+ }
403
+ if (patient.maritalStatus && patient.maritalStatus.text) {
404
+ respuesta = respuesta &&
405
+ Object.keys(patient.maritalStatus).every(codingFields) &&
406
+ typeof patient.maritalStatus.text === 'string' &&
407
+ patient.maritalStatus.text.match('Married|Divorced|Widowed|unmarried|unknown') != null;
408
+ }
409
+ if (patient.photo) {
410
+ patient.photo.forEach((aPhoto) => {
411
+ respuesta = respuesta && Object.keys(aPhoto).every(photoFields);
412
+ });
413
+ }
414
+ if (patient.contact) {
415
+ patient.contact.forEach((aContact) => {
416
+ if (aContact.relationship) {
417
+ aContact.relationship.forEach((aRelation) => {
418
+ respuesta = respuesta && Object.keys(aRelation).every(codingFields);
419
+ });
420
+ }
421
+ if (aContact.name) {
422
+ respuesta = respuesta && validName(aContact.name);
423
+ }
424
+ });
425
+ }
426
+ }
427
+ else {
428
+ respuesta = fieldVerified;
429
+ }
430
+ return respuesta;
431
+ }
432
+ exports.verify = verify;
433
+ /**
434
+ * Verify helpers
435
+ */
436
+ function pacienteFHIRFields(elem) {
437
+ return elem.match('resourceType|identifier|active|name|telecom|gender|birthDate|deceasedBoolean|deceasedDateTime|address|maritalStatus|photo|contact') != null;
438
+ }
439
+ function identifierFields(elem) {
440
+ return elem.match('use|type|system|value|period|assigner') != null;
441
+ }
442
+ function nameFields(elem) {
443
+ return elem.match('resourceType|family|given') != null;
444
+ }
445
+ function telecomFields(elem) {
446
+ return elem.match('resourceType|system|value|use|rank|period') != null;
447
+ }
448
+ function addressFields(elem) {
449
+ return elem.match('resourceType|use|type|text|line|city|district|state|postalCode|country|period') != null;
450
+ }
451
+ function codingFields(elem) {
452
+ return elem.match('coding|text') != null;
453
+ }
454
+ function photoFields(elem) {
455
+ return elem.match('contentType|language|data|url|size|hash|title|creation') != null;
456
+ }
457
+ function validName(aName) {
458
+ return Object.keys(aName).every(nameFields) &&
459
+ ('resourceType' in aName) && aName.resourceType === 'HumanName' &&
460
+ ('family' in aName) && Array.isArray(aName.family) && aName.family.every(areStrings) &&
461
+ ('given' in aName) && Array.isArray(aName.given) && aName.given.every(areStrings);
462
+ }
463
+ function areStrings(elem) {
464
+ return typeof elem === 'string';
465
+ }