@andes/fhir 1.12.0 → 1.12.1-beta.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/{src → dist}/data/patient.json +192 -192
- package/dist/{src/helpers → helpers}/patientFactory.js +35 -31
- package/dist/{src/lib → lib}/allergyIntolerance.js +39 -40
- package/dist/{src/lib → lib}/bundle.js +25 -26
- package/dist/{src/lib → lib}/composition.js +152 -152
- package/dist/{src/lib → lib}/condition.js +79 -80
- package/dist/{src/lib → lib}/config.js +27 -21
- package/dist/lib/config.test.js +19 -0
- package/dist/{src/lib → lib}/device.js +38 -39
- package/dist/lib/device.test.js +9 -0
- package/dist/{src/lib → lib}/document-reference.js +106 -107
- package/dist/{src/lib → lib}/immunization.js +67 -68
- package/{src/lib/medication.ts → dist/lib/medication.js} +64 -61
- package/{src/lib/medicationRequest.ts → dist/lib/medicationRequest.js} +103 -100
- package/dist/{src/lib → lib}/medicationStatement.js +55 -56
- package/dist/lib/organization.js +93 -0
- package/dist/lib/patient.js +465 -0
- package/dist/{src/lib → lib}/patient.test.js +132 -113
- package/dist/lib/practitioner.js +186 -0
- package/dist/types/andes/organization.types.js +2 -0
- package/dist/types/andes/patient.types.js +2 -0
- package/dist/types/andes/practitioner.types.js +3 -0
- package/package.json +53 -44
- package/.circleci/config.yml +0 -72
- package/.editorconfig +0 -14
- package/.env.example +0 -2
- package/.gitattributes +0 -1
- package/.github/CODEOWNERS +0 -1
- package/.github/labeler.yml +0 -11
- package/.github/pull_request_template.md +0 -28
- package/.github/workflows/build_test.yml +0 -14
- package/.github/workflows/has_conflicts.yml +0 -13
- package/.vscode/settings.json +0 -2
- package/CHANGELOG.md +0 -351
- package/coverage/clover.xml +0 -209
- package/coverage/coverage-final.json +0 -5
- package/coverage/lcov-report/base.css +0 -224
- package/coverage/lcov-report/block-navigation.js +0 -87
- package/coverage/lcov-report/config.ts.html +0 -136
- package/coverage/lcov-report/device.ts.html +0 -193
- package/coverage/lcov-report/favicon.png +0 -0
- package/coverage/lcov-report/helpers/index.html +0 -116
- package/coverage/lcov-report/helpers/patientFactory.ts.html +0 -124
- package/coverage/lcov-report/index.html +0 -131
- package/coverage/lcov-report/lib/config.ts.html +0 -136
- package/coverage/lcov-report/lib/device.ts.html +0 -193
- package/coverage/lcov-report/lib/index.html +0 -146
- package/coverage/lcov-report/lib/patient.ts.html +0 -1318
- package/coverage/lcov-report/patient.ts.html +0 -1207
- package/coverage/lcov-report/prettify.css +0 -1
- package/coverage/lcov-report/prettify.js +0 -2
- package/coverage/lcov-report/sort-arrow-sprite.png +0 -0
- package/coverage/lcov-report/sorter.js +0 -210
- package/coverage/lcov.info +0 -425
- package/dist/index.js +0 -52
- package/dist/index.js.map +0 -1
- package/dist/src/data/patient.json +0 -192
- package/dist/src/helpers/patientFactory.js.map +0 -1
- package/dist/src/lib/allergyIntolerance.js.map +0 -1
- package/dist/src/lib/bundle.js.map +0 -1
- package/dist/src/lib/composition.js.map +0 -1
- package/dist/src/lib/condition.js.map +0 -1
- package/dist/src/lib/config.js.map +0 -1
- package/dist/src/lib/config.test.js +0 -13
- package/dist/src/lib/config.test.js.map +0 -1
- package/dist/src/lib/device.js.map +0 -1
- package/dist/src/lib/device.test.js +0 -10
- package/dist/src/lib/device.test.js.map +0 -1
- package/dist/src/lib/document-reference.js.map +0 -1
- package/dist/src/lib/immunization.js.map +0 -1
- package/dist/src/lib/medication.js +0 -65
- package/dist/src/lib/medication.js.map +0 -1
- package/dist/src/lib/medicationRequest.js +0 -103
- package/dist/src/lib/medicationRequest.js.map +0 -1
- package/dist/src/lib/medicationStatement.js.map +0 -1
- package/dist/src/lib/organization.js +0 -91
- package/dist/src/lib/organization.js.map +0 -1
- package/dist/src/lib/patient.js +0 -397
- package/dist/src/lib/patient.js.map +0 -1
- package/dist/src/lib/patient.test.js.map +0 -1
- package/dist/src/lib/practitioner.js +0 -161
- package/dist/src/lib/practitioner.js.map +0 -1
- package/index.ts +0 -30
- package/jest.config.js +0 -12
- package/release.config.js +0 -74
- package/src/helpers/patientFactory.ts +0 -13
- package/src/lib/allergyIntolerance.ts +0 -36
- package/src/lib/bundle.ts +0 -19
- package/src/lib/composition.ts +0 -153
- package/src/lib/condition.ts +0 -80
- package/src/lib/config.test.ts +0 -13
- package/src/lib/config.ts +0 -17
- package/src/lib/device.test.ts +0 -9
- package/src/lib/device.ts +0 -36
- package/src/lib/document-reference.ts +0 -102
- package/src/lib/immunization.ts +0 -64
- package/src/lib/medicationStatement.ts +0 -52
- package/src/lib/organization.ts +0 -89
- package/src/lib/patient.test.ts +0 -101
- package/src/lib/patient.ts +0 -411
- package/src/lib/practitioner.ts +0 -157
- package/tsconfig.test.json +0 -18
- package/tslint.json +0 -139
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"use strict";
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.verify = exports.decode = exports.encode = void 0;
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const config_1 = require("./config");
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/**
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* Helpers
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*/
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function formatDateOnly(value) {
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if (!value)
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return undefined;
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const d = typeof value === 'string' ? new Date(value) : value;
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if (isNaN(d.getTime()))
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return undefined;
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return d.toISOString().slice(0, 10);
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}
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function formatDateTime(value) {
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if (!value)
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return undefined;
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const d = typeof value === 'string' ? new Date(value) : value;
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if (isNaN(d.getTime()))
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return undefined;
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return d.toISOString();
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}
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function mapGeneroFHIRToAndes(gender) {
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switch (gender) {
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case 'female':
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return 'femenino';
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case 'male':
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return 'masculino';
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case 'other':
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return 'otro';
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default:
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return undefined;
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}
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}
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function mapSexoAndesToGenderFHIR(sexo) {
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switch (sexo) {
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case 'femenino':
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return 'female';
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case 'masculino':
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return 'male';
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case 'otro':
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return 'other';
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default:
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return undefined; // unknown
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}
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}
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function buildGenderIdentityExtension(genero) {
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if (!genero) {
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return [];
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}
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return [{
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url: 'http://hl7.org/fhir/StructureDefinition/individual-genderIdentity',
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valueCode: genero
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}];
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}
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function buildStatusExtension(estado) {
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const value = estado ?? 'temporal';
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return [{
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url: 'andes.gob.ar/fhir/StructureDefinition/patient-status',
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valueCode: value
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}];
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}
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function mapEstadoCivilAndesToFHIR(estadoCivil) {
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switch (estadoCivil) {
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case 'casado':
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return 'Married';
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case 'divorciado':
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return 'Divorced';
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case 'viudo':
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return 'Widowed';
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case 'soltero':
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return 'unmarried';
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default:
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return 'unknown';
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}
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}
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function mapEstadoCivilFHIRToAndes(estadoCivil) {
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switch (estadoCivil) {
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case 'Married':
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return 'casado';
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case 'Divorced':
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return 'divorciado';
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case 'Widowed':
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return 'viudo';
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case 'unmarried':
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return 'soltero';
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default:
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return 'otro';
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}
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}
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/**
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* Encode a patient from ANDES to FHIR
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*/
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function encode(patient) {
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if (!patient) {
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return null;
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}
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// Identificadores
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const identificadores = [];
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// Dominio local (id de ANDES o equivalente)
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identificadores.push({
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system: (0, config_1.getDominio)(),
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value: patient._id ?? patient.id
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});
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if (patient.documento) {
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identificadores.push({
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system: 'http://www.renaper.gob.ar/dni',
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value: patient.documento
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});
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}
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if (patient.cuil) {
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identificadores.push({
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system: 'http://www.renaper.gob.ar/cuil',
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value: patient.cuil
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});
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}
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if (patient.numeroIdentificacion) {
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if (patient.tipoIdentificacion === 'dni extranjero') {
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identificadores.push({
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system: 'andes.gob.ar/sid/foreign-id',
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value: patient.numeroIdentificacion
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});
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}
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if (patient.tipoIdentificacion === 'pasaporte') {
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identificadores.push({
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system: 'andes.gob.ar/sid/passport',
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value: patient.numeroIdentificacion
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});
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}
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}
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// Contactos → telecom
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const contactos = (patient.contacto ?? [])
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.filter((c) => !!c.valor)
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.map((unContacto) => {
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const cont = {
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value: unContacto.valor,
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rank: unContacto.ranking
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};
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switch (unContacto.tipo) {
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case 'fijo':
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case 'celular':
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cont.system = 'phone';
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break;
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case 'email':
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cont.system = 'email';
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break;
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}
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return cont;
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});
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// Direcciones → address
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const direcciones = (patient.direccion ?? [])
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.filter((dir) => !!dir.ubicacion?.localidad)
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.map((unaDireccion) => {
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const city = typeof unaDireccion.ubicacion.localidad === 'object'
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? unaDireccion.ubicacion.localidad?.nombre
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: unaDireccion.ubicacion.localidad;
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const state = typeof unaDireccion.ubicacion.provincia === 'object'
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? unaDireccion.ubicacion.provincia?.nombre
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: unaDireccion.ubicacion.provincia;
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const country = typeof unaDireccion.ubicacion.pais === 'object'
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? unaDireccion.ubicacion.pais?.nombre
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: unaDireccion.ubicacion.pais;
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return {
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postalCode: unaDireccion.codigoPostal ?? '',
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line: [unaDireccion.valor],
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city: city ?? '',
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state: state ?? '',
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country: country ?? ''
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};
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});
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// Relaciones → contact
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const relacionesFHIR = (patient.relaciones ?? [])
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.filter((r) => !!r.relacion)
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.map((unaRelacion) => {
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return {
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relationship: [{
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text: unaRelacion.relacion.nombre
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}],
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name: {
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family: unaRelacion.apellido,
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given: unaRelacion.nombre.split(' ')
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}
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};
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});
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// Género
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// const generoFHIR = mapGeneroAndesToFHIR(patient.genero ?? patient.sexo);
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const generoFHIR = mapSexoAndesToGenderFHIR(patient.sexo ?? patient.genero);
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const genderIdentityExtensions = buildGenderIdentityExtension(patient.genero);
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const statusExtensions = buildStatusExtension(patient.estado);
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const birthDate = formatDateOnly(patient.fechaNacimiento);
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const extensions = [...statusExtensions, ...genderIdentityExtensions];
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const pacienteFHIR = {
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resourceType: 'Patient',
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id: patient._id ?? patient.id,
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identifier: identificadores,
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active: patient.activo ?? undefined,
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name: [{
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use: 'official',
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family: patient.apellido,
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given: patient.nombre.split(' '),
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text: `${patient.nombre} ${patient.apellido}`
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}],
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gender: generoFHIR,
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birthDate,
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...(extensions.length > 0 && { extension: extensions })
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};
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if (patient.fechaFallecimiento) {
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const deceased = formatDateTime(patient.fechaFallecimiento);
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if (deceased) {
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pacienteFHIR.deceasedDateTime = deceased;
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}
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}
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if (patient.estadoCivil) {
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pacienteFHIR.maritalStatus = {
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text: mapEstadoCivilAndesToFHIR(patient.estadoCivil)
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};
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}
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if (patient.foto) {
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pacienteFHIR.photo = [{ data: patient.foto }];
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}
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if (contactos.length > 0) {
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pacienteFHIR.telecom = contactos;
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}
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if (direcciones.length > 0) {
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pacienteFHIR.address = direcciones;
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}
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if (relacionesFHIR.length > 0) {
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pacienteFHIR.contact = relacionesFHIR;
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}
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if (patient.createdBy?.organizacion) {
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const managingOrganization = {
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reference: patient.createdBy.organizacion.id,
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display: patient.createdBy.organizacion.nombre
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};
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pacienteFHIR.managingOrganization = managingOrganization;
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}
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return pacienteFHIR;
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}
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exports.encode = encode;
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/**
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* Decode a patient from FHIR to ANDES
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*/
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function decode(patient) {
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let genero;
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let sexo;
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// Cuando el paciente viene por FHIR suponemos el valor del género
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genero = mapGeneroFHIRToAndes(patient.gender);
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sexo = genero;
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function getValue(items, key) {
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if (!items)
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return undefined;
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|
+
const element = items.find(el => el.system === key);
|
|
254
|
+
return element?.value;
|
|
255
|
+
}
|
|
256
|
+
const tiposIdentificacion = ['andes.gob.ar/sid/foreign-id', 'andes.gob.ar/sid/passport'];
|
|
257
|
+
const tipoAndes = ['dni extranjero', 'pasaporte'];
|
|
258
|
+
let tipoIdentificacion;
|
|
259
|
+
let numeroIdentificacion;
|
|
260
|
+
for (let i = 0; i < tiposIdentificacion.length; i++) {
|
|
261
|
+
const val = getValue(patient.identifier, tiposIdentificacion[i]);
|
|
262
|
+
if (val) {
|
|
263
|
+
tipoIdentificacion = tipoAndes[i];
|
|
264
|
+
numeroIdentificacion = val;
|
|
265
|
+
}
|
|
266
|
+
}
|
|
267
|
+
const firstName = patient.name?.[0];
|
|
268
|
+
const nombre = firstName
|
|
269
|
+
? (firstName.given ?? []).join(' ').trim()
|
|
270
|
+
: '';
|
|
271
|
+
const apellido = firstName
|
|
272
|
+
? (Array.isArray(firstName.family)
|
|
273
|
+
? firstName.family.join(' ').trim()
|
|
274
|
+
: (firstName.family ?? ''))
|
|
275
|
+
: '';
|
|
276
|
+
const pacienteAndes = {
|
|
277
|
+
id: getValue(patient.identifier, (0, config_1.makeUrl)('Patient')) ?? patient.id,
|
|
278
|
+
documento: getValue(patient.identifier, 'http://www.renaper.gob.ar/dni'),
|
|
279
|
+
tipoIdentificacion,
|
|
280
|
+
numeroIdentificacion,
|
|
281
|
+
nombre,
|
|
282
|
+
apellido,
|
|
283
|
+
fechaNacimiento: patient.birthDate,
|
|
284
|
+
genero,
|
|
285
|
+
sexo,
|
|
286
|
+
estado: 'temporal'
|
|
287
|
+
};
|
|
288
|
+
const contactos = patient.telecom
|
|
289
|
+
? patient.telecom.map((unContacto) => {
|
|
290
|
+
const cont = {
|
|
291
|
+
valor: unContacto.value,
|
|
292
|
+
ranking: unContacto.rank
|
|
293
|
+
};
|
|
294
|
+
switch (unContacto.system) {
|
|
295
|
+
case 'phone':
|
|
296
|
+
cont.tipo = 'celular';
|
|
297
|
+
break;
|
|
298
|
+
case 'email':
|
|
299
|
+
cont.tipo = 'email';
|
|
300
|
+
break;
|
|
301
|
+
}
|
|
302
|
+
return cont;
|
|
303
|
+
})
|
|
304
|
+
: [];
|
|
305
|
+
const relaciones = patient.contact
|
|
306
|
+
? patient.contact.map((aContact) => {
|
|
307
|
+
const relText = aContact.relationship?.[0]?.text ?? '';
|
|
308
|
+
const givenName = (aContact.name?.given ?? []).join(' ').replace(',', ' ');
|
|
309
|
+
const familyName = Array.isArray(aContact.name?.family)
|
|
310
|
+
? (aContact.name?.family).join(' ').replace(',', ' ')
|
|
311
|
+
: aContact.name?.family ?? '';
|
|
312
|
+
return {
|
|
313
|
+
relacion: { nombre: relText },
|
|
314
|
+
nombre: givenName,
|
|
315
|
+
apellido: familyName
|
|
316
|
+
};
|
|
317
|
+
})
|
|
318
|
+
: [];
|
|
319
|
+
if (patient.maritalStatus?.text) {
|
|
320
|
+
pacienteAndes.estadoCivil = mapEstadoCivilFHIRToAndes(patient.maritalStatus.text);
|
|
321
|
+
}
|
|
322
|
+
const direcciones = patient.address
|
|
323
|
+
? patient.address.map((unaDireccion) => {
|
|
324
|
+
const valor = Array.isArray(unaDireccion.line)
|
|
325
|
+
? (unaDireccion.line[0] ?? '')
|
|
326
|
+
: unaDireccion.line ?? '';
|
|
327
|
+
const dir = {
|
|
328
|
+
activo: true,
|
|
329
|
+
valor,
|
|
330
|
+
codigoPostal: unaDireccion.postalCode,
|
|
331
|
+
ubicacion: {
|
|
332
|
+
pais: unaDireccion.country,
|
|
333
|
+
provincia: unaDireccion.state,
|
|
334
|
+
localidad: unaDireccion.city
|
|
335
|
+
}
|
|
336
|
+
};
|
|
337
|
+
return dir;
|
|
338
|
+
})
|
|
339
|
+
: [];
|
|
340
|
+
pacienteAndes.direccion = direcciones;
|
|
341
|
+
if (patient.active !== undefined) {
|
|
342
|
+
pacienteAndes.activo = patient.active;
|
|
343
|
+
}
|
|
344
|
+
if (contactos.length > 0) {
|
|
345
|
+
pacienteAndes.contacto = contactos;
|
|
346
|
+
}
|
|
347
|
+
if (patient.photo && patient.photo.length > 0) {
|
|
348
|
+
pacienteAndes.foto = patient.photo[0].data;
|
|
349
|
+
}
|
|
350
|
+
if (relaciones.length > 0) {
|
|
351
|
+
pacienteAndes.relaciones = relaciones;
|
|
352
|
+
}
|
|
353
|
+
if (patient.managingOrganization) {
|
|
354
|
+
pacienteAndes.createdBy = {
|
|
355
|
+
organizacion: {
|
|
356
|
+
id: patient.managingOrganization.reference ?? '',
|
|
357
|
+
nombre: patient.managingOrganization.display ?? ''
|
|
358
|
+
}
|
|
359
|
+
};
|
|
360
|
+
}
|
|
361
|
+
return pacienteAndes;
|
|
362
|
+
}
|
|
363
|
+
exports.decode = decode;
|
|
364
|
+
/**
|
|
365
|
+
* Verify if a patient has a FHIR format
|
|
366
|
+
*/
|
|
367
|
+
function verify(patient) {
|
|
368
|
+
let respuesta = true;
|
|
369
|
+
const fieldVerified = Object.keys(patient).every(pacienteFHIRFields);
|
|
370
|
+
if (fieldVerified) {
|
|
371
|
+
respuesta = ('resourceType' in patient) && patient.resourceType === 'Patient';
|
|
372
|
+
respuesta = respuesta && ('identifier' in patient);
|
|
373
|
+
if (patient.identifier?.length > 0) {
|
|
374
|
+
patient.identifier.forEach((anIdentifier) => {
|
|
375
|
+
respuesta = respuesta && Object.keys(anIdentifier).every(identifierFields);
|
|
376
|
+
});
|
|
377
|
+
}
|
|
378
|
+
patient.name?.forEach((aName) => {
|
|
379
|
+
respuesta = respuesta && validName(aName);
|
|
380
|
+
});
|
|
381
|
+
if (patient.active !== undefined) {
|
|
382
|
+
respuesta = respuesta && (typeof patient.active === 'boolean');
|
|
383
|
+
}
|
|
384
|
+
if (patient.telecom) {
|
|
385
|
+
patient.telecom.forEach((aTelecom) => {
|
|
386
|
+
respuesta = respuesta && Object.keys(aTelecom).every(telecomFields);
|
|
387
|
+
});
|
|
388
|
+
}
|
|
389
|
+
if (patient.gender) {
|
|
390
|
+
respuesta = respuesta && patient.gender.match('male|female|other|unknown') != null;
|
|
391
|
+
}
|
|
392
|
+
if (patient.birthDate) {
|
|
393
|
+
respuesta = respuesta && typeof patient.birthDate === 'string';
|
|
394
|
+
}
|
|
395
|
+
if (patient.deceasedDateTime) {
|
|
396
|
+
respuesta = respuesta && typeof patient.deceasedDateTime === 'string';
|
|
397
|
+
}
|
|
398
|
+
if (patient.address) {
|
|
399
|
+
patient.address.forEach((anAddress) => {
|
|
400
|
+
respuesta = respuesta && Object.keys(anAddress).every(addressFields);
|
|
401
|
+
});
|
|
402
|
+
}
|
|
403
|
+
if (patient.maritalStatus && patient.maritalStatus.text) {
|
|
404
|
+
respuesta = respuesta &&
|
|
405
|
+
Object.keys(patient.maritalStatus).every(codingFields) &&
|
|
406
|
+
typeof patient.maritalStatus.text === 'string' &&
|
|
407
|
+
patient.maritalStatus.text.match('Married|Divorced|Widowed|unmarried|unknown') != null;
|
|
408
|
+
}
|
|
409
|
+
if (patient.photo) {
|
|
410
|
+
patient.photo.forEach((aPhoto) => {
|
|
411
|
+
respuesta = respuesta && Object.keys(aPhoto).every(photoFields);
|
|
412
|
+
});
|
|
413
|
+
}
|
|
414
|
+
if (patient.contact) {
|
|
415
|
+
patient.contact.forEach((aContact) => {
|
|
416
|
+
if (aContact.relationship) {
|
|
417
|
+
aContact.relationship.forEach((aRelation) => {
|
|
418
|
+
respuesta = respuesta && Object.keys(aRelation).every(codingFields);
|
|
419
|
+
});
|
|
420
|
+
}
|
|
421
|
+
if (aContact.name) {
|
|
422
|
+
respuesta = respuesta && validName(aContact.name);
|
|
423
|
+
}
|
|
424
|
+
});
|
|
425
|
+
}
|
|
426
|
+
}
|
|
427
|
+
else {
|
|
428
|
+
respuesta = fieldVerified;
|
|
429
|
+
}
|
|
430
|
+
return respuesta;
|
|
431
|
+
}
|
|
432
|
+
exports.verify = verify;
|
|
433
|
+
/**
|
|
434
|
+
* Verify helpers
|
|
435
|
+
*/
|
|
436
|
+
function pacienteFHIRFields(elem) {
|
|
437
|
+
return elem.match('resourceType|identifier|active|name|telecom|gender|birthDate|deceasedBoolean|deceasedDateTime|address|maritalStatus|photo|contact') != null;
|
|
438
|
+
}
|
|
439
|
+
function identifierFields(elem) {
|
|
440
|
+
return elem.match('use|type|system|value|period|assigner') != null;
|
|
441
|
+
}
|
|
442
|
+
function nameFields(elem) {
|
|
443
|
+
return elem.match('resourceType|family|given') != null;
|
|
444
|
+
}
|
|
445
|
+
function telecomFields(elem) {
|
|
446
|
+
return elem.match('resourceType|system|value|use|rank|period') != null;
|
|
447
|
+
}
|
|
448
|
+
function addressFields(elem) {
|
|
449
|
+
return elem.match('resourceType|use|type|text|line|city|district|state|postalCode|country|period') != null;
|
|
450
|
+
}
|
|
451
|
+
function codingFields(elem) {
|
|
452
|
+
return elem.match('coding|text') != null;
|
|
453
|
+
}
|
|
454
|
+
function photoFields(elem) {
|
|
455
|
+
return elem.match('contentType|language|data|url|size|hash|title|creation') != null;
|
|
456
|
+
}
|
|
457
|
+
function validName(aName) {
|
|
458
|
+
return Object.keys(aName).every(nameFields) &&
|
|
459
|
+
('resourceType' in aName) && aName.resourceType === 'HumanName' &&
|
|
460
|
+
('family' in aName) && Array.isArray(aName.family) && aName.family.every(areStrings) &&
|
|
461
|
+
('given' in aName) && Array.isArray(aName.given) && aName.given.every(areStrings);
|
|
462
|
+
}
|
|
463
|
+
function areStrings(elem) {
|
|
464
|
+
return typeof elem === 'string';
|
|
465
|
+
}
|