@amsterdamdatalabs/enact-docs-search 0.1.2 → 0.2.0

package/README.md

@@ -1,7 +1,6 @@
 # @amsterdamdatalabs/enact-docs-search
 
-Hybrid BM25 and vector search over a repository's `docs/`, `.plans/`, and
-`.specs/` knowledge trees.
+Hybrid BM25 and vector search over a repository's `docs/` knowledge tree.
 
 ## Install
 
@@ -64,19 +63,45 @@ npm rebuild hnswlib-node onnxruntime-node sharp protobufjs --foreground-scripts
 Run inside a target repository:
 
 ```bash
-enact-docs-search query "how crate boundaries are defined?"
+enact-docs-search how crate boundaries are defined
+enact-docs-search query how crate boundaries are defined
 enact-docs-search index
 enact-docs-search index --force
 enact-docs-search prepare
 ```
 
+The `query` command is optional. Unquoted words are joined into one query;
+quotes remain useful when the shell must preserve punctuation or special
+characters.
+
 Queries automatically provision a missing model and refresh missing or stale
 indexes incrementally. If keyword-only indexing leaves semantic vectors stale,
 the next hybrid or semantic query repairs them automatically before searching.
 `prepare` performs the model bootstrap and a complete semantic index build
-explicitly. Use `enact-docs-search --help` for advanced scope, mode, JSON, and
+explicitly. Use `enact-docs-search --help` for mode, JSON, and
 exclusion controls.
 
+## Ranking
+
+Frontmatter is parsed, not indexed as prose. `title` and `description` are
+weighted above heading text, which is weighted above body text, so a document
+whose title answers the query outranks one that mentions it in passing. Results
+collapse to one entry per file.
+
+Each result is labelled with what the document says about itself --
+`[stable · operations · 2026-09-15]`. A document marked `status: draft` is
+demoted; one that makes no status claim is left alone. Age decays a result's
+score with a 180-day half-life, floored so an old document is demoted, never
+buried. `--raw-rank` turns this weighting off, and `--explain` prints the score
+and the multiplier behind every result.
+
+Results that do not clear a relevance floor are dropped rather than padded out:
+semantic hits need a minimum cosine similarity, and keyword hits must cover
+enough of the query's weight, measured by term rarity so the term that carried
+the query is the one that counts. A query nothing matches exits `1` with no
+results, which is a real answer -- not an empty list dressed up as ten weak
+ones. `--min-score` and `--min-coverage` adjust both floors.
+
 The package is also usable through `npx` or `bunx`:
 
 ```bash

package/dist/cli.js

@@ -1,21 +1,24 @@
 #!/usr/bin/env node
 /**
  * enact-docs-search — hybrid (BM25 + vector) search CLI over a repo's
- * docs/.plans/.specs knowledge trees. Takes the target repo as an argument;
+ * docs/ knowledge tree. Takes the target repo as an argument;
  * does not hardcode any particular checkout.
  *
  * Usage:
- *   enact-docs-search index --repo <path> [--scope docs|plans|specs|all] [--force] [--keyword-only]
- *   enact-docs-search query "<text>" --repo <path> [--scope ...] [--mode hybrid|keyword|semantic] [--limit N]
+ *   enact-docs-search index --repo <path> [--force] [--keyword-only]
+ *   enact-docs-search <text...> --repo <path> [--mode hybrid|keyword|semantic] [--limit N]
+ *   enact-docs-search query "<text>" --repo <path> [--mode hybrid|keyword|semantic] [--limit N]
  */
 import { DocumentStore } from "./storage/document-store.js";
 import { VectorStore, DependencyError as VectorDependencyError } from "./storage/vector-store.js";
 import { EmbeddingService, DependencyError as EmbeddingDependencyError } from "./embeddings/embedding-service.js";
 import { SearchService } from "./search/search-service.js";
+import { normalizeQuery, DEFAULT_MIN_VECTOR_SCORE, DEFAULT_MIN_TERM_COVERAGE } from "./search/relevance.js";
+import { extractQueryTerms } from "./search/snippet.js";
 import { runIndex } from "./indexing/indexing-service.js";
 import { listMarkdownFiles } from "./adapter/repo-walker.js";
 import { repoCacheDir, repoCacheRoot, repoModelCacheDir, ensureRepoCache, CachePermissionError, paths, readManifest, readDocumentStoreExport, readVectorSidecar, vectorIndexExists, checkFreshness, EMBEDDING_MODEL_ID, } from "./storage/persistence.js";
-import { scopesToRoots } from "./types.js";
+import { DOCS_ROOT } from "./types.js";
 import { existsSync } from "node:fs";
 import { createRequire } from "node:module";
 import { dirname, join } from "node:path";
@@ -23,21 +26,24 @@ import { renderDoctor, runDoctor } from "./doctor.js";
 const EMBEDDING_DIMENSIONS = 384;
 const { version: PACKAGE_VERSION } = createRequire(import.meta.url)("../package.json");
 function usage() {
-    return `enact-docs-search — hybrid semantic + keyword search over docs/.plans/.specs
+    return `enact-docs-search — hybrid semantic + keyword search over docs/
 
 Usage:
-  enact-docs-search index --repo <path> [--scope docs|plans|specs|all] [--force] [--keyword-only] [--exclude <glob>]
-  enact-docs-search prepare --repo <path> [--scope docs|plans|specs|all] [--force] [--exclude <glob>]
-  enact-docs-search query "<text>" --repo <path> [--scope docs|plans|specs|all] [--mode hybrid|keyword|semantic] [--limit N] [--exclude <glob>]
+  enact-docs-search index --repo <path> [--force] [--keyword-only] [--exclude <glob>]
+  enact-docs-search prepare --repo <path> [--force] [--exclude <glob>]
+  enact-docs-search <text...> --repo <path> [--mode hybrid|keyword|semantic] [--limit N] [--exclude <glob>]
+  enact-docs-search query <text...> --repo <path> [--mode hybrid|keyword|semantic] [--limit N] [--exclude <glob>]
   enact-docs-search doctor [--json]
 
 Options:
   --repo <path>       Target repository root. If omitted, auto-detected by
-                      walking up from the current directory for docs/,
-                      .plans/, or .specs/
-  --scope <scope>     docs | plans | specs | all (default: all)
+                      walking up from the current directory for docs/
   --mode <mode>       hybrid | keyword | semantic (default: hybrid, query only)
-  --limit <n>         Max results to return (default: 10, query only)
+  --limit <n>         Max results to return, positive integer (default: 10, query only)
+  --min-score <n>     Cosine floor for semantic hits, 0-1 (default: ${DEFAULT_MIN_VECTOR_SCORE})
+  --min-coverage <n>  Fraction of query terms a hit must contain, 0-1 (default: ${DEFAULT_MIN_TERM_COVERAGE})
+  --raw-rank          Do not apply status/recency weighting
+  --explain           Show the score and the authority multiplier per result
   --force             Full rebuild, ignoring the incremental manifest (index/prepare only)
   --keyword-only      Skip embedding generation entirely (index only, much faster)
   --exclude <glob>    Additional glob to exclude from scanning; repeatable
@@ -49,10 +55,91 @@ index --force only for an explicit full rebuild.
 
 Exit codes: 0 = matches found, 1 = no matches, 2 = usage/dependency error.`;
 }
+/**
+ * Read the value for a flag at the end of argv with nothing after it
+ * (`--limit` with no argument at all). Letting that `undefined` flow
+ * downstream produces NaN (see parseNumberFlag) rather than a usage error.
+ * Shared by both the string and numeric value readers below; the numeric
+ * one stops here deliberately, because a leading '-' is a legitimate
+ * negative number for it to reject on range, not on shape.
+ */
+function requireRawValue(argv, i, flag) {
+    const value = argv[i];
+    if (value === undefined)
+        fail(`${flag} requires a value`);
+    return value;
+}
+/**
+ * Read the value for a flag whose argument is always a string (never a
+ * negative number), so a value that itself looks like another option is
+ * never legitimate. Two ways this goes wrong, both confirmed:
+ *   1. A flag at the end of argv (`--repo` with nothing after it) —
+ *      handled by requireRawValue.
+ *   2. A flag immediately followed by another flag (`--repo --force`) has
+ *      no dangling gap to detect, but the "value" is really the next
+ *      option, not an argument for this one. Confirmed: this silently took
+ *      "--force" as the repo path (creating a literal `--force` directory
+ *      on disk) while --force itself vanished, unconsumed. Same failure as
+ *      (1) wearing a different disguise, so it gets the same fail-loud
+ *      treatment rather than a best-effort guess.
+ */
+function requireValue(argv, i, flag) {
+    const value = requireRawValue(argv, i, flag);
+    if (value.startsWith("-"))
+        fail(`${flag} requires a value, got option-like '${value}' instead`);
+    return value;
+}
+/**
+ * Numeric flags must fail loudly, not silently. `Number(undefined)` and
+ * `Number("abc")` both produce NaN, which then compares false against every
+ * threshold (`score >= NaN` is always false) and empties `slice(0, NaN)` —
+ * the tool reports a confident "0 result(s)" for what was actually a typo.
+ * Validating here, before search ever runs, keeps that lie out of the exit
+ * code (2 = usage error) and out of the result count (which means 1 = no
+ * matches, honestly). Uses requireRawValue, not requireValue: '-0.35' is a
+ * legitimate negative number here, to be rejected on range below, not
+ * mistaken for a swallowed option.
+ */
+function parseNumberFlag(argv, i, flag) {
+    const raw = requireRawValue(argv, i, flag);
+    const value = Number(raw);
+    if (!Number.isFinite(value))
+        fail(`${flag} must be a number, got '${raw}'`);
+    return value;
+}
+/**
+ * `--min-score` and `--min-coverage` are both gate thresholds bounded to
+ * [0, 1]: cosine similarity is clamped to that range in VectorStore, and
+ * IDF-weighted coverage is a fraction of the query's weight (see
+ * relevance.ts). A value outside that range can never pass or can never
+ * matter, so it is a usage mistake, not a legitimate strict/lax setting.
+ */
+function parseUnitFraction(argv, i, flag, unit) {
+    const raw = argv[i];
+    const value = parseNumberFlag(argv, i, flag);
+    if (value < 0 || value > 1) {
+        fail(`${flag} must be between 0 and 1 (${unit}), got '${raw}'`);
+    }
+    return value;
+}
+/**
+ * `--limit` feeds `slice(0, limit)` and an overfetch multiplier. Zero,
+ * negative, and fractional counts are all usage mistakes rather than valid
+ * "give me nothing" or "give me half a result" requests.
+ */
+function parsePositiveInteger(argv, i, flag) {
+    const raw = argv[i];
+    const value = parseNumberFlag(argv, i, flag);
+    if (!Number.isInteger(value) || value < 1) {
+        fail(`${flag} must be a positive integer, got '${raw}'`);
+    }
+    return value;
+}
 function parseArgs(argv) {
     const parsed = {
         positional: [],
-        scope: "all",
+        explain: false,
+        rawRank: false,
         mode: "hybrid",
         limit: 10,
         force: false,
@@ -64,16 +151,25 @@ function parseArgs(argv) {
         const arg = argv[i];
         switch (arg) {
             case "--repo":
-                parsed.repo = argv[++i];
-                break;
-            case "--scope":
-                parsed.scope = argv[++i];
+                parsed.repo = requireValue(argv, ++i, arg);
                 break;
             case "--mode":
-                parsed.mode = argv[++i];
+                parsed.mode = requireValue(argv, ++i, arg);
+                break;
+            case "--explain":
+                parsed.explain = true;
+                break;
+            case "--raw-rank":
+                parsed.rawRank = true;
+                break;
+            case "--min-score":
+                parsed.minScore = parseUnitFraction(argv, ++i, arg, "cosine similarity");
+                break;
+            case "--min-coverage":
+                parsed.minCoverage = parseUnitFraction(argv, ++i, arg, "fraction of query weight");
                 break;
             case "--limit":
-                parsed.limit = Number(argv[++i]);
+                parsed.limit = parsePositiveInteger(argv, ++i, arg);
                 break;
             case "--force":
                 parsed.force = true;
@@ -82,7 +178,7 @@ function parseArgs(argv) {
                 parsed.keywordOnly = true;
                 break;
             case "--exclude":
-                parsed.exclude.push(argv[++i]);
+                parsed.exclude.push(requireValue(argv, ++i, arg));
                 break;
             case "--json":
                 parsed.json = true;
@@ -93,6 +189,8 @@ function parseArgs(argv) {
                 process.exit(0);
                 break;
             default:
+                if (arg.startsWith("-"))
+                    fail(`unknown option '${arg}'`);
                 parsed.positional.push(arg);
         }
     }
@@ -113,28 +211,21 @@ function info(message) {
 }
 /**
  * Auto-detect a repo root when --repo is omitted: walk up from cwd looking
- * for a directory that has any of docs/, .plans/, or .specs/. Stops at the
+ * for a directory that has docs/. Stops at the
  * filesystem root. Returns null if nothing is found, so the caller can fail
  * with a clear message rather than silently picking the wrong directory.
  */
 function detectRepoRoot(startDir) {
     let dir = startDir;
     for (;;) {
-        for (const marker of ["docs", ".plans", ".specs"]) {
-            if (existsSync(join(dir, marker)))
-                return dir;
-        }
+        if (existsSync(join(dir, DOCS_ROOT)))
+            return dir;
         const parent = dirname(dir);
         if (parent === dir)
             return null;
         dir = parent;
     }
 }
-function validateScope(scope) {
-    if (!["docs", "plans", "specs", "all"].includes(scope)) {
-        fail(`unknown scope '${scope}' (use docs, plans, specs, or all)`);
-    }
-}
 function validateMode(mode) {
     if (!["keyword", "semantic", "hybrid"].includes(mode)) {
         fail(`unknown mode '${mode}' (use keyword, semantic, or hybrid)`);
@@ -144,7 +235,7 @@ function resolveRepo(args) {
     if (!args.repo) {
         const detected = detectRepoRoot(process.cwd());
         if (!detected) {
-            fail("--repo <path> was not given, and no docs/, .plans/, or .specs/ found walking up from " +
+            fail("--repo <path> was not given, and no docs/ found walking up from " +
                 process.cwd() +
                 " — pass --repo explicitly");
         }
@@ -154,13 +245,11 @@ function resolveRepo(args) {
 }
 async function cmdIndex(args) {
     resolveRepo(args);
-    validateScope(args.scope);
-    info(`root: ${args.repo} (scope: ${args.scope})`);
+    info(`root: ${args.repo}`);
     const t0 = Date.now();
     let lastPhase = "";
     const result = await runIndex({
         repoPath: args.repo,
-        scope: args.scope,
         force: args.force,
         skipEmbeddings: args.keywordOnly,
         exclude: args.exclude,
@@ -176,7 +265,7 @@ async function cmdIndex(args) {
         },
     });
     process.stderr.write("\n");
-    console.log(`enact-docs-search: indexed scope='${result.scope}' — ` +
+    console.log(`enact-docs-search: indexed docs/ — ` +
         `${result.filesScanned} files scanned, ${result.filesChanged} changed, ${result.filesRemoved} removed, ` +
         `${result.chunksIndexed} chunks, ${result.embeddingsGenerated} embeddings ` +
         `(${(Date.now() - t0)}ms)`);
@@ -184,7 +273,6 @@ async function cmdIndex(args) {
 }
 async function cmdPrepare(args) {
     resolveRepo(args);
-    validateScope(args.scope);
     await ensureRepoCache(args.repo);
     const embeddingService = new EmbeddingService({
         modelCacheDir: repoModelCacheDir(args.repo),
@@ -194,7 +282,6 @@ async function cmdPrepare(args) {
     await embeddingService.embed("semantic search bootstrap");
     await runIndex({
         repoPath: args.repo,
-        scope: args.scope,
         force: args.force,
         exclude: args.exclude,
         allowRemoteModels: true,
@@ -213,27 +300,31 @@ async function cmdDoctor(args) {
         process.exitCode = 2;
 }
 async function cmdQuery(args) {
-    const query = args.positional[0];
+    const query = normalizeQuery(args.positional.join(" "));
     if (!query)
         fail("a query string is required");
+    // Every term was a stopword. Searching anyway returns whatever the index
+    // ranks highest for filler words -- a confident answer to a question that
+    // was never asked. Say so instead.
+    if (extractQueryTerms(query).length === 0) {
+        fail(`no searchable terms in "${query}" -- every word is a stopword`);
+    }
     resolveRepo(args);
-    validateScope(args.scope);
     validateMode(args.mode);
     await ensureRepoCache(args.repo);
     // In --json mode, stdout must be pure JSON for downstream parsers — route
     // this status line to stderr instead of suppressing it outright.
     if (args.json) {
-        console.error(`root: ${args.repo} (scope: ${args.scope}, mode: ${args.mode})`);
+        console.error(`root: ${args.repo} (mode: ${args.mode})`);
     }
     else {
-        info(`root: ${args.repo} (scope: ${args.scope}, mode: ${args.mode})`);
+        info(`root: ${args.repo} (mode: ${args.mode})`);
     }
     const cacheDir = repoCacheDir(args.repo);
     const manifest = await readManifest(cacheDir);
     // Freshness check (I-08: refresh stale or missing results before serving them).
-    const roots = scopesToRoots(args.scope);
-    const currentFiles = await listMarkdownFiles(args.repo, roots, { exclude: args.exclude });
-    const freshness = checkFreshness(manifest, args.scope, currentFiles, args.mode !== "keyword");
+    const currentFiles = await listMarkdownFiles(args.repo, [DOCS_ROOT], { exclude: args.exclude });
+    const freshness = checkFreshness(manifest, currentFiles, args.mode !== "keyword");
     const hasVectorFile = args.mode !== "keyword" && await vectorIndexExists(cacheDir);
     const vectorSidecar = args.mode !== "keyword" ? await readVectorSidecar(cacheDir) : null;
     const needsVectorIndex = args.mode !== "keyword" &&
@@ -249,7 +340,7 @@ async function cmdQuery(args) {
                 : freshness.vectorStaleCount > 0
                     ? `${freshness.vectorStaleCount} stale vector file(s)`
                     : "no usable vector index";
-        const message = `enact-docs-search: refreshing ${args.scope} index (${reason})`;
+        const message = `enact-docs-search: refreshing docs/ index (${reason})`;
         if (args.json)
             console.error(message);
         else
@@ -257,7 +348,6 @@ async function cmdQuery(args) {
         try {
             await runIndex({
                 repoPath: args.repo,
-                scope: args.scope,
                 force: rebuildVectorIndex,
                 skipEmbeddings: args.mode === "keyword",
                 exclude: args.exclude,
@@ -279,7 +369,7 @@ async function cmdQuery(args) {
     if (args.mode !== "keyword") {
         const hasVectors = await vectorIndexExists(cacheDir);
         if (!hasVectors) {
-            fail(`no vector index for scope '${args.scope}' after automatic refresh`);
+            fail("no vector index after automatic refresh");
         }
         const sidecar = await readVectorSidecar(cacheDir);
         if (!sidecar)
@@ -303,27 +393,42 @@ async function cmdQuery(args) {
     const searchService = new SearchService(docStore, vectorStore, embeddingService);
     const results = await searchService.search(query, {
         mode: args.mode,
-        scope: args.scope,
         limit: args.limit,
         highlight,
         repoRoot: args.repo,
+        minVectorScore: args.minScore,
+        minCoverage: args.minCoverage,
+        rawRank: args.rawRank,
     });
     if (args.json) {
-        console.log(JSON.stringify({ query, mode: args.mode, scope: args.scope, results }, null, 2));
+        console.log(JSON.stringify({ query, mode: args.mode, results }, null, 2));
     }
     else {
-        printResults(query, results);
+        printResults(query, results, args.explain);
     }
     process.exit(results.length > 0 ? 0 : 1);
 }
-function printResults(query, results) {
+/** `[stable · operations · 2026-09-15]` — the document's own claims about itself. */
+function metaLabel(r) {
+    const day = r.lastUpdate?.slice(0, 10);
+    const parts = [r.status, r.documentType, day].filter(Boolean);
+    return parts.length ? `  [${parts.join(" · ")}]` : "";
+}
+function explainLabel(r) {
+    const base = r.baseScore ?? 0;
+    const authority = r.authority ?? 1;
+    return `   score ${base.toFixed(4)} x${authority.toFixed(3)} = ${(base * authority).toFixed(4)}`;
+}
+function printResults(query, results, explain) {
     console.log(`${results.length} result(s) for "${query}"`);
     if (results.length === 0)
         return;
     results.forEach((r, i) => {
         console.log("");
         const heading = r.headingBreadcrumb?.length ? ` [${r.headingBreadcrumb.join(" > ")}]` : "";
-        console.log(`${i + 1}. ${r.filePath}:${r.startLine}${heading}`);
+        console.log(`${i + 1}. ${r.filePath}:${r.startLine}${heading}${metaLabel(r)}`);
+        if (explain)
+            console.log(explainLabel(r));
         console.log(`   ${r.snippet ?? ""}`);
     });
 }
@@ -352,7 +457,7 @@ async function main() {
             await cmdDoctor(args);
             break;
         default:
-            fail(`unknown command '${command}' (use 'index', 'prepare', 'query', or 'doctor')`);
+            await cmdQuery(parseArgs([command, ...rest]));
     }
 }
 main().catch((error) => {

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/indexing/chunker.d.ts

@@ -44,8 +44,13 @@ export declare class Chunker {
     private findFirstNonHeadingContent;
     /**
      * Split a document into chunks.
+     *
+     * `lineOffset` is the number of lines removed from the top of the file
+     * before chunking (a stripped frontmatter block). It is added to every
+     * `startLine` so citations point at the file on disk, not at the trimmed
+     * body this method actually sees.
      */
-    chunk(content: string, filePath: string): Chunk[];
+    chunk(content: string, filePath: string, lineOffset?: number): Chunk[];
     private findBreakPoint;
     private findCodeBlockBoundary;
 }

package/dist/indexing/chunker.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/indexing/chunker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,WAAW,KAAK;IACpB,qCAAqC;IACrC,OAAO,EAAE,MAAM,CAAC;IAChB,8BAA8B;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,yDAAyD;IACzD,UAAU,EAAE,MAAM,CAAC;IACnB,iEAAiE;IACjE,QAAQ,EAAE,MAAM,CAAC;IACjB,+DAA+D;IAC/D,MAAM,EAAE,MAAM,CAAC;IACf,2EAA2E;IAC3E,SAAS,EAAE,MAAM,CAAC;IAClB,yEAAyE;IACzE,iBAAiB,EAAE,MAAM,EAAE,CAAC;CAC7B;AAED,MAAM,WAAW,YAAY;IAC3B,uDAAuD;IACvD,YAAY,EAAE,MAAM,CAAC;IACrB,mEAAmE;IACnE,cAAc,EAAE,MAAM,CAAC;CACxB;AAOD;;;;GAIG;AACH,qBAAa,OAAO;IAClB,OAAO,CAAC,OAAO,CAAe;gBAElB,OAAO,GAAE,OAAO,CAAC,YAAY,CAAM;IAI/C;;OAEG;IACH,oBAAoB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE;IAqBjE,OAAO,CAAC,0BAA0B;IAiClC;;OAEG;IACH,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,KAAK,EAAE;IAuEjD,OAAO,CAAC,cAAc;IA8CtB,OAAO,CAAC,qBAAqB;CAoB9B"}
+{"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../src/indexing/chunker.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,MAAM,WAAW,KAAK;IACpB,qCAAqC;IACrC,OAAO,EAAE,MAAM,CAAC;IAChB,8BAA8B;IAC9B,QAAQ,EAAE,MAAM,CAAC;IACjB,yDAAyD;IACzD,UAAU,EAAE,MAAM,CAAC;IACnB,iEAAiE;IACjE,QAAQ,EAAE,MAAM,CAAC;IACjB,+DAA+D;IAC/D,MAAM,EAAE,MAAM,CAAC;IACf,2EAA2E;IAC3E,SAAS,EAAE,MAAM,CAAC;IAClB,yEAAyE;IACzE,iBAAiB,EAAE,MAAM,EAAE,CAAC;CAC7B;AAED,MAAM,WAAW,YAAY;IAC3B,uDAAuD;IACvD,YAAY,EAAE,MAAM,CAAC;IACrB,mEAAmE;IACnE,cAAc,EAAE,MAAM,CAAC;CACxB;AAOD;;;;GAIG;AACH,qBAAa,OAAO;IAClB,OAAO,CAAC,OAAO,CAAe;gBAElB,OAAO,GAAE,OAAO,CAAC,YAAY,CAAM;IAI/C;;OAEG;IACH,oBAAoB,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,MAAM,EAAE;IAqBjE,OAAO,CAAC,0BAA0B;IAmClC;;;;;;;OAOG;IACH,KAAK,CAAC,OAAO,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,UAAU,SAAI,GAAG,KAAK,EAAE;IAuEjE,OAAO,CAAC,cAAc;IA8CtB,OAAO,CAAC,qBAAqB;CAoB9B"}

package/dist/indexing/chunker.js

@@ -57,14 +57,15 @@ export class Chunker {
             else if (line.trim() === "") {
                 i = lineEnd === -1 ? len : lineEnd + 1;
             }
-            else if (line.startsWith("---") && i === 0) {
-                const frontmatterEnd = content.indexOf("\n---", i + 3);
-                if (frontmatterEnd !== -1) {
-                    i = frontmatterEnd + 4;
-                }
-                else {
-                    break;
-                }
+            else if (/^-{3,}\s*$/.test(line)) {
+                // A standalone rule is decoration, so skip the line and keep looking
+                // for the heading that labels this chunk. This branch used to treat a
+                // leading `---` as a frontmatter opener and jump to the next `---`,
+                // which swallowed the heading directly below it -- and with two rules
+                // in a document, labelled the chunk with a heading from further down.
+                // Frontmatter no longer reaches the chunker (it is stripped before
+                // chunking), so a `---` here can only ever be a horizontal rule.
+                i = lineEnd === -1 ? len : lineEnd + 1;
             }
             else {
                 break;
@@ -74,8 +75,13 @@ export class Chunker {
     }
     /**
      * Split a document into chunks.
+     *
+     * `lineOffset` is the number of lines removed from the top of the file
+     * before chunking (a stripped frontmatter block). It is added to every
+     * `startLine` so citations point at the file on disk, not at the trimmed
+     * body this method actually sees.
      */
-    chunk(content, filePath) {
+    chunk(content, filePath, lineOffset = 0) {
         const trimmed = content.trim();
         if (!trimmed) {
             return [];
@@ -89,7 +95,7 @@ export class Chunker {
                     chunkIndex: 0,
                     startPos: 0,
                     endPos: normalized.length,
-                    startLine: 1,
+                    startLine: 1 + lineOffset,
                     headingBreadcrumb: this.getHeadingBreadcrumb(normalized, 0),
                 },
             ];
@@ -122,7 +128,7 @@ export class Chunker {
                 chunkIndex,
                 startPos: position,
                 endPos: actualEnd,
-                startLine: lineNumberAt(normalized, position),
+                startLine: lineNumberAt(normalized, position) + lineOffset,
                 headingBreadcrumb: this.getHeadingBreadcrumb(normalized, position),
             });
             const advance = actualEnd - position - overlapSize;

package/dist/indexing/chunker.js.map

@@ -1 +1 @@
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