@amsterdamdatalabs/adl-agent-control-linux-x64 0.1.5 → 0.1.7

package/bin/adl

@@ -1,4 +1,4 @@
 [diffend] Oversized file quarantined before diffing.
 name: package/bin/adl
 size: 82875872 bytes
-sha256: 0718722d7710f0a5b08b96a2b6bf8802dc91097a36195ee20f1817e3cbd12487
+sha256: b562edfda0f280940a2b5874874f83c22bde7fe8cd5b9d8159c003f4b53e1f5c

package/bin/reconcile

@@ -407,12 +407,14 @@ run_brew_upgrade_all() {
     echo "brew upgrade: nothing outdated"
     return 0
   fi
-  local upgrade_output upgrade_status=0
+  local upgrade_status=0
   # Routed through run_brew itself (same owner/cwd/stdin wiring as every
   # other brew mutation in this file), bounded by run_with_timeout so a
   # network-stalled `brew upgrade` cannot hang the rest of this run forever.
-  upgrade_output="$(run_with_timeout "$BREW_UPGRADE_ALL_TIMEOUT_SECONDS" run_brew upgrade 2>&1)" || upgrade_status=$?
-  printf '%s\n' "$upgrade_output"
+  # brew's output streams live -- never captured and printed at the end,
+  # which left a long upgrade silent for minutes and looking stuck.
+  echo "brew upgrade: $formulae_count formulae, $casks_count casks outdated; upgrading (timeout ${BREW_UPGRADE_ALL_TIMEOUT_SECONDS}s)"
+  run_with_timeout "$BREW_UPGRADE_ALL_TIMEOUT_SECONDS" run_brew upgrade 2>&1 || upgrade_status=$?
   if [[ "$upgrade_status" -eq 124 ]]; then
     echo "brew upgrade timed out after ${BREW_UPGRADE_ALL_TIMEOUT_SECONDS}s" >&2
     return 1
@@ -454,28 +456,15 @@ run_npm() {
   fi
 }
 
-# Whether a read-only, owner-scoped query (brew_query, npm_installed_version)
-# can run without asking for privilege reconcile does not already have. Apply
-# mode always runs as real root (checked elsewhere), which can sudo -u any
-# administrator with no password. A plan/audit preview run has no such
-# guarantee -- $administrator on a Linux VPS device is "root", and previewing
-# that device's plan from an unprivileged account must not demand a sudo
-# password it may not have; it falls back to the pre-2026-09-28 unconditional
-# message instead. Self-administered devices (m3: administrator=tarunrana)
-# need no escalation at all, so their preview can query for real.
-can_query_as_administrator() {
-  [[ "$(id -un)" == "$administrator" ]] || [[ "$(id -u)" -eq 0 ]]
-}
-
 # Read-only Homebrew query, run exactly like run_brew's real mutations (same
 # owner, cwd, and stdin) but never a mutation itself. A named function so
 # tests can stub just this, instead of having to fake sudo's own argument
 # parsing the way a raw inline `sudo -u ... "$brew_bin" ...` would require.
-# Apply-mode only (see can_query_as_administrator): `brew list`/`brew
-# outdated` have been observed to take minutes under real load on a
-# contended box (Homebrew's own auto-update against a large git checkout),
-# so a plan preview never calls this -- it would turn a "quick look" into a
-# slow, load-dependent one for every brew formula on the device.
+# Apply-mode only: `brew list`/`brew outdated` have been observed to take
+# minutes under real load on a contended box (Homebrew's own auto-update
+# against a large git checkout), so a plan preview never calls this -- it
+# would turn a "quick look" into a slow, load-dependent one for every brew
+# formula on the device.
 brew_query() {
   (cd /tmp && sudo -u "$brew_owner" -H "$brew_bin" "$@" </dev/null)
 }
@@ -798,6 +787,27 @@ install_surface_policy_file() {
   echo "installed required surface policy: $target"
 }
 
+# A resolved release version against the first line of a release-archive-
+# latest tool's own `--version` output. Different tools format that line
+# differently -- lean-ctx: "lean-ctx 3.10.5 (official, ...)" (version padded
+# by spaces on both sides); agent-vault: "agent-vault version 0.39.3" (flush
+# against the end of the line, no trailing space); a plain "vX.Y.Z" line
+# with no separating space before the version at all -- so the LEFT boundary
+# is a string start or a real space, with an OPTIONAL literal "v" directly
+# after that boundary (never "v" floating anywhere: found in review,
+# 2026-09-28, `(^|[ v])` treated a bare "v" as equivalent to a space no
+# matter what preceded it, so "tool dev0.39.3"/"tool rev0.39.3" -- where the
+# "v" belongs to "dev"/"rev", not a version prefix -- silently matched and
+# would have skipped a real upgrade). The RIGHT boundary is a space or a
+# string end and never accepts "v", or "0.39.3" would incorrectly match
+# inside "0.39.30". Dots in the version are escaped so they match literally,
+# not "any character," in the regex below.
+release_archive_version_matches() {
+  local version_line="$1" version="$2" escaped
+  escaped="$(printf '%s' "$version" | sed 's/[.[\*^$()+?{}|]/\\&/g')"
+  grep -Eq "(^| )v?${escaped}( |\$)" <<<"$version_line"
+}
+
 # Resolves the release tag GitHub's own "latest" redirect currently points
 # at, without touching the api.github.com REST API (unauthenticated calls
 # there are rate-limited per source IP; this fleet's shared egress IP already
@@ -811,65 +821,33 @@ resolve_latest_release_tag() {
   basename "$location"
 }
 
-run_release_archive() {
-  local package="$1"
-  local version="$2"
-  local url="$3"
-  local expected_sha256="$4"
-  local archive_executable="$5"
-  local target="$6"
-  if [[ "$mode" != apply ]]; then
-    printf 'would install pinned release archive: %s %s -> %s\n' "$package" "$version" "$target"
-    return 0
-  fi
-  [[ "$(id -u)" -eq 0 ]] || { echo "apply mode must run as root" >&2; exit 1; }
-  [[ "$target" == /usr/local/bin/* ]] || { echo "release archive target must be under /usr/local/bin: $target" >&2; exit 1; }
-  [[ "$archive_executable" != /* && "$archive_executable" != *..* ]] || {
-    echo "unsafe archive executable path: $archive_executable" >&2
-    exit 1
-  }
-
-  (
-    local release_dir archive_file extract_dir actual_sha256
-    release_dir="$(mktemp -d)"
-    trap 'rm -rf "$release_dir"' EXIT
-    archive_file="$release_dir/release.tar.gz"
-    extract_dir="$release_dir/extract"
-    mkdir -p "$extract_dir"
-    curl --proto '=https' --proto-redir '=https' -fsSL --retry 3 -o "$archive_file" "$url"
-    case "$(uname -s)" in
-      Darwin) actual_sha256="$(shasum -a 256 "$archive_file" | awk '{print $1}')" ;;
-      Linux) actual_sha256="$(sha256sum "$archive_file" | awk '{print $1}')" ;;
-      *) echo "unsupported operating system for release archive" >&2; exit 1 ;;
-    esac
-    [[ "$actual_sha256" == "$expected_sha256" ]] || {
-      echo "checksum mismatch for $package $version" >&2
-      exit 1
-    }
-    tar -xzf "$archive_file" -C "$extract_dir" "$archive_executable"
-    [[ -f "$extract_dir/$archive_executable" ]] || {
-      echo "archive executable missing: $archive_executable" >&2
-      exit 1
-    }
-    atomic_install_executable "$extract_dir/$archive_executable" "$target"
-  )
-}
-
-# Like run_release_archive, but never pins a version or checksum in the
-# manifest: it always installs whatever GitHub's own "latest" alias currently
-# serves, verified against the checksums file published *in that same
-# release* (never a value carried over from a previous run or hardcoded
-# here) -- fails loud, installs nothing, if that checksums asset is missing
-# or doesn't list our asset. `.../releases/latest/download/<name>` is GitHub's
-# own stable alias for "the matching asset of whatever release is latest
-# right now", so the download itself never needs the resolved tag.
+# A GitHub release archive, installed under /usr/local/bin, verified against
+# a checksum published *in that same release* (never a value carried over
+# from a previous run or hardcoded here) -- fails loud, installs nothing, if
+# the checksums asset is missing or doesn't list our asset. It always
+# installs whatever GitHub's own "latest" release was when install_one_tool
+# resolved $tag (resolve_latest_release_tag), fetched with $tag pinned into
+# BOTH download URLs -- `.../releases/download/<tag>/<name>`, never through
+# GitHub's separate "always whatever is latest right now" alias for the
+# downloads themselves. Fixed 2026-09-29 (review): that alias re-resolves on
+# every request, so a release published between the tag resolve and the
+# archive download would otherwise serve the checksums file from one release
+# and the archive from a newer one -- silently mixing versions past the
+# checksum check (which would still "pass" against whichever checksums file
+# actually got fetched). Pinning both fetches to the one $tag closes that
+# window.
+# Tarun, 2026-09-29 (hard rule): versions are never pinned in the manifest --
+# this replaced the old pinned run_release_archive (fixed version + url +
+# sha256), which validate-manifest no longer accepts on any manager; $tag
+# here is resolved fresh every run, never carried over or hardcoded.
 run_release_archive_latest() {
   local package="$1"
   local repo="$2"
-  local asset="$3"
-  local checksums_asset="$4"
-  local archive_executable="$5"
-  local target="$6"
+  local tag="$3"
+  local asset="$4"
+  local checksums_asset="$5"
+  local archive_executable="$6"
+  local target="$7"
   [[ "$(id -u)" -eq 0 ]] || { echo "apply mode must run as root" >&2; exit 1; }
   [[ "$target" == /usr/local/bin/* ]] || { echo "release archive target must be under /usr/local/bin: $target" >&2; exit 1; }
   [[ "$archive_executable" != /* && "$archive_executable" != *..* ]] || {
@@ -886,13 +864,13 @@ run_release_archive_latest() {
     extract_dir="$release_dir/extract"
     mkdir -p "$extract_dir"
     curl --proto '=https' --proto-redir '=https' -fsSL --retry 3 \
-      -o "$checksums_file" "https://github.com/$repo/releases/latest/download/$checksums_asset"
+      -o "$checksums_file" "https://github.com/$repo/releases/download/$tag/$checksums_asset"
     expected_sha256="$(awk -v want="$asset" '$2 == want { print $1; found = 1 } END { exit !found }' "$checksums_file")" || {
       echo "no published checksum for $asset in $repo's $checksums_asset -- refusing to install unverified bytes" >&2
       exit 1
     }
     curl --proto '=https' --proto-redir '=https' -fsSL --retry 3 \
-      -o "$archive_file" "https://github.com/$repo/releases/latest/download/$asset"
+      -o "$archive_file" "https://github.com/$repo/releases/download/$tag/$asset"
     case "$(uname -s)" in
       Darwin) actual_sha256="$(shasum -a 256 "$archive_file" | awk '{print $1}')" ;;
       Linux) actual_sha256="$(sha256sum "$archive_file" | awk '{print $1}')" ;;
@@ -942,7 +920,7 @@ resolve_surface_mode() {
 # root") is a real environment fault, not a flaky install, and still
 # aborts immediately -- `exit` is unconditional and is never caught here.
 install_one_tool() {
-  local tool_id="$1" manager package executable previous_executable migrating_from_bun=0 rc=0 npm_version npm_spec npm_allow_scripts npm_target_version npm_installed_ver npm_plan_installed brew_outdated_output brew_installed_version
+  local tool_id="$1" manager package executable previous_executable migrating_from_bun=0 rc=0 npm_spec npm_allow_scripts npm_target_version npm_installed_ver brew_outdated_output brew_installed_version
   manager="$(jq -r --arg id "$tool_id" '.[$id].manager' "$resolved_file")"
   package="$(jq -r --arg id "$tool_id" '.[$id].package' "$resolved_file")"
   executable="$(jq -r --arg id "$tool_id" '.[$id].executable' "$resolved_file")"
@@ -998,15 +976,14 @@ install_one_tool() {
       run_apt install -y "$package" || rc=1
       ;;
     npm)
-      # An entry's optional .version pins the installed release (e.g.
-      # adl-agent-id, Handoff 5 2026-09-26 H4) rather than tracking whatever
-      # npm resolves as latest for update_policy=latest-stable. Ownership
+      # Tarun, 2026-09-29 (hard rule): versions are never pinned -- every
+      # fleet tool installs latest stable. npm entries never carry a
+      # .version (validate-manifest rejects one outright); $npm_spec stays a
+      # separate variable from $package only because the exact run_npm
+      # invocation below is asserted at the source level. Ownership
       # verification below still uses the bare package name: npm's global
-      # tree and package.json are keyed by package, never by the requested
-      # version spec.
-      npm_version="$(jq -r --arg id "$tool_id" '.[$id].version // empty' "$resolved_file")"
+      # tree and package.json are keyed by package, never by a version spec.
       npm_spec="$package"
-      [[ -z "$npm_version" ]] || npm_spec="$package@$npm_version"
       # Only @amsterdamdatalabs/enact-docs-search's manifest entry carries
       # this (docs/operations/global-tools.md Topic 2, decided 2026-09-28):
       # its own dependencies' install scripts, explicitly reviewed and
@@ -1017,41 +994,20 @@ install_one_tool() {
           previous_executable="$(jq -r --arg id "$tool_id" '.[$id].executable' "$previous_resolved_file")"
           echo "would remove retired Bun compilation before npm install: $tool_id ($previous_executable and $(bun_source_hash_file "$tool_id"))"
         fi
-        # A pinned version is a pure local/offline fact: compare it against
-        # the real global install (npm_installed_version, no network) and say
-        # so honestly. An UNPINNED entry's "latest stable" is not knowable
-        # without a per-package registry round trip (npm_latest_version) --
-        # doing that here would make a plan preview slow and network-bound
-        # for every unpinned npm tool on the device, so it keeps today's
-        # conservative message instead of guessing. Either way, only query
-        # when it needs no new sudo privilege (can_query_as_administrator) --
-        # a preview run must not demand a password a different device's real
-        # administrator would need.
-        if [[ -n "$npm_version" ]] && can_query_as_administrator; then
-          if npm_plan_installed="$(npm_installed_version "$package")"; then
-            if [[ -n "$npm_plan_installed" && "$npm_plan_installed" == "$npm_version" ]]; then
-              echo "already latest: $tool_id (npm:$package@$npm_plan_installed)"
-            else
-              echo "would install or upgrade npm package: $npm_spec"
-            fi
-          else
-            echo "would install or upgrade npm package: $npm_spec (installed version not checked: npm ls -g failed)"
-          fi
-        else
-          echo "would install or upgrade npm package: $npm_spec"
-        fi
+        # "latest stable" is not knowable without a per-package registry
+        # round trip (npm_latest_version) -- doing that here would make a
+        # plan preview slow and network-bound for every npm tool on the
+        # device, so plan mode always prints this unconditional message
+        # instead of guessing.
+        echo "would install or upgrade npm package: $npm_spec"
       else
         if is_in_place_bun_to_npm_migration "$tool_id"; then
           migrating_from_bun=1
           prepare_in_place_bun_to_npm_migration "$tool_id" || rc=1
         fi
-        if [[ "$rc" -eq 0 ]]; then
-          if [[ -n "$npm_version" ]]; then
-            npm_target_version="$npm_version"
-          elif ! npm_target_version="$(npm_latest_version "$package")"; then
-            echo "$tool_id: npm view could not resolve the latest version of $package" >&2
-            rc=1
-          fi
+        if [[ "$rc" -eq 0 ]] && ! npm_target_version="$(npm_latest_version "$package")"; then
+          echo "$tool_id: npm view could not resolve the latest version of $package" >&2
+          rc=1
         fi
         if [[ "$rc" -eq 0 ]]; then
           if ! npm_installed_ver="$(npm_installed_version "$package")"; then
@@ -1079,21 +1035,8 @@ install_one_tool() {
       fi
       [[ "$rc" -eq 0 ]] && { ensure_global_pip_executable "$executable" || rc=1; }
       ;;
-    release-archive)
-      local version url sha256 archive_executable
-      version="$(jq -r --arg id "$tool_id" '.[$id].version' "$resolved_file")"
-      url="$(jq -r --arg id "$tool_id" '.[$id].url' "$resolved_file")"
-      sha256="$(jq -r --arg id "$tool_id" '.[$id].sha256' "$resolved_file")"
-      archive_executable="$(jq -r --arg id "$tool_id" '.[$id].archive_executable' "$resolved_file")"
-      if [[ "$mode" == apply && -x "$executable" ]] &&
-        "$executable" version 2>/dev/null | head -n 1 | grep -Fq "v$version"; then
-        echo "pinned release already installed: $package $version"
-      else
-        run_release_archive "$package" "$version" "$url" "$sha256" "$archive_executable" "$executable" || rc=1
-      fi
-      ;;
     release-archive-latest)
-      local repo asset checksums_asset archive_executable latest_tag latest_version
+      local repo asset checksums_asset archive_executable latest_tag latest_version resolved_asset resolved_checksums_asset
       repo="$(jq -r --arg id "$tool_id" '.[$id].repo' "$resolved_file")"
       asset="$(jq -r --arg id "$tool_id" '.[$id].asset' "$resolved_file")"
       checksums_asset="$(jq -r --arg id "$tool_id" '.[$id].checksums_asset // "SHA256SUMS"' "$resolved_file")"
@@ -1104,10 +1047,17 @@ install_one_tool() {
         latest_tag="$(resolve_latest_release_tag "$repo")" || { rc=1; latest_tag=""; }
         if [[ "$rc" -eq 0 ]]; then
           latest_version="${latest_tag#v}"
-          if [[ -x "$executable" ]] && "$executable" --version 2>/dev/null | head -n 1 | grep -Fq " $latest_version "; then
+          # A release whose asset filename bakes in the version (agent-vault:
+          # agent-vault_<ver>_darwin_arm64.tar.gz) declares "{version}" in
+          # .asset/.checksums_asset; lean-ctx's own asset names carry no
+          # version at all, so this is a no-op substring replace for it.
+          resolved_asset="${asset//\{version\}/$latest_version}"
+          resolved_checksums_asset="${checksums_asset//\{version\}/$latest_version}"
+          if [[ -x "$executable" ]] &&
+            release_archive_version_matches "$("$executable" --version 2>/dev/null | head -n 1)" "$latest_version"; then
             echo "latest release already installed: $package $latest_version"
           else
-            run_release_archive_latest "$package" "$repo" "$asset" "$checksums_asset" "$archive_executable" "$executable" || rc=1
+            run_release_archive_latest "$package" "$repo" "$latest_tag" "$resolved_asset" "$resolved_checksums_asset" "$archive_executable" "$executable" || rc=1
           fi
         fi
       fi
@@ -1652,6 +1602,212 @@ remove_one_repo_dir() {
   rm -rf -- "$target"
 }
 
+# Lexical-only path normalization: collapses repeated slashes ("//" ->
+# "/") and current-dir segments ("/./" -> "/"), and drops one trailing
+# slash. Never resolves ".." or symlinks, and never touches the filesystem
+# -- the target frequently doesn't exist yet when this runs. Second review
+# pass, 2026-09-29: without this, "/usr/local/bin//agent-vault" and
+# "/usr/local/bin/agent-vault" compare unequal even though they name the
+# same real file, silently defeating executable_claimed_by_current_manifest
+# below (the guard would say "not claimed" and let the old manager's `rm -f`
+# through) -- previous_resolved_file is never validated, so a malformed
+# path there is exactly the case this guard exists to protect against.
+normalize_manifest_path() {
+  local path="$1"
+  while [[ "$path" == *//* ]]; do path="${path//\/\//\/}"; done
+  while [[ "$path" == */./* ]]; do path="${path//\/.\//\/}"; done
+  path="${path%/}"
+  printf '%s\n' "$path"
+}
+
+# A previous entry's executable path can be EXACTLY the path a CURRENT
+# entry now owns -- e.g. agent-vault-cli migrating release-archive ->
+# release-archive-latest, both /usr/local/bin/agent-vault. Bug found in
+# review, 2026-09-29: the install loop runs BEFORE the removal loop below
+# and already wrote/verified that binary; "retain shared package after
+# entry deletion" only skips removal when manager+package are BOTH
+# unchanged, so a manager-only change (exactly this migration) still
+# selects the id for removal, and the OLD manager's case arm then does a
+# plain `rm -f` on the path the install pass upstream just installed.
+# Checked by executable path, not by tool_id/manager/package, because that
+# is the one thing the filesystem actually cares about -- both sides
+# normalized first (see normalize_manifest_path) so a malformed legacy path
+# in previous_resolved_file still compares equal to a clean one.
+#
+# Second review pass, 2026-09-29 (bare-name executables): most managers
+# store an ABSOLUTE path in .executable (release-archive-latest, shim,
+# bun-compile, repo-script all require the /usr/local/bin/ prefix), but pip,
+# npm, and brew store a bare command name instead -- pip's own
+# ensure_global_pip_executable/remove_global_pip_executable ALWAYS place (or
+# remove) that name as a fixed /usr/local/bin/<name> symlink regardless of
+# the pip package name, so a bare pip .executable maps there and IS
+# compared. npm and brew do not get the same treatment: their real install
+# location depends on the device's own npm global prefix / Homebrew prefix,
+# resolved only through a live `command -v` PATH search
+# (npm_global_executable_path) that varies by platform -- never a single
+# fixed path this function can compute without shelling out. A migration
+# INTO an npm or brew entry is not detected here and the old manager's real
+# removal proceeds exactly as before this fix. That gap is narrower than it
+# looks: npm and brew each remove through their OWN package manager (`npm
+# uninstall -g`, `brew uninstall`), never the raw `rm -f` this guard
+# protects, so nothing here relies on rm to leave an npm/brew-owned file
+# alone in the first place.
+executable_claimed_by_current_manifest() {
+  local target="$1" normalized_target normalized_current current_manager current_executable
+  normalized_target="$(normalize_manifest_path "$target")"
+  while IFS=$'\t' read -r current_manager current_executable; do
+    [[ -n "$current_executable" ]] || continue
+    if [[ "$current_executable" == /* ]]; then
+      normalized_current="$(normalize_manifest_path "$current_executable")"
+    elif [[ "$current_manager" == pip ]]; then
+      normalized_current="$(normalize_manifest_path "/usr/local/bin/$current_executable")"
+    else
+      continue
+    fi
+    [[ "$normalized_current" == "$normalized_target" ]] && return 0
+  done < <(jq -r '.[] | [.manager, .executable] | @tsv' "$resolved_file")
+  return 1
+}
+
+# Uninstalls a single previously-applied tool the CURRENT manifest no longer
+# declares (or has migrated to a different manager/package) -- extracted
+# into its own function, like install_one_tool, so
+# packages/fleet/tests/test-manifest.sh can exercise it directly through the
+# RECONCILE_SOURCE_ONLY seam instead of only through a real apply run.
+remove_one_manifest_entry() {
+  local tool_id="$1" manager package executable removed_repo_dir_target
+  if jq -e --arg id "$tool_id" '.config.protected_tools | index($id)' "$manifest" >/dev/null; then
+    echo "refusing to remove protected bootstrap tool: $tool_id" >&2
+    exit 1
+  fi
+  manager="$(jq -r --arg id "$tool_id" '.[$id].manager' "$previous_resolved_file")"
+  package="$(jq -r --arg id "$tool_id" '.[$id].package' "$previous_resolved_file")"
+  executable="$(jq -r --arg id "$tool_id" '.[$id].executable' "$previous_resolved_file")"
+  if is_in_place_bun_to_npm_migration "$tool_id"; then
+    if [[ "$mode" == apply ]]; then
+      echo "retired Bun compilation already removed for npm migration: $tool_id"
+    fi
+    return 0
+  fi
+  if jq -e --arg manager "$manager" --arg package "$package" 'to_entries | any(.value.manager == $manager and .value.package == $package)' "$resolved_file" >/dev/null; then
+    echo "retain shared package after entry deletion: $manager:$package"
+    return 0
+  fi
+  # Truthfulness fix (second review pass, 2026-09-29): for the managers that
+  # remove via a raw filesystem `rm -f` on a fixed path (never their own
+  # package manager's uninstall command), check executable_claimed_by_
+  # current_manifest BEFORE claiming an "uninstall" happened at all. The
+  # log line printed below this case is the only outcome a human or another
+  # tool sees; printing "explicit manifest deletion: uninstall ..." and only
+  # THEN discovering the file is retained (as this used to) makes the log
+  # lie about what just happened, exactly backwards from "log the decision
+  # as the outcome."
+  case "$manager" in
+    release-archive | release-archive-latest | shim | bun-compile)
+      if executable_claimed_by_current_manifest "$executable"; then
+        echo "retain $tool_id ($manager:$package): $executable is still declared by the current manifest"
+        return 0
+      fi
+      ;;
+  esac
+  echo "explicit manifest deletion: uninstall $tool_id ($manager:$package)"
+  case "$manager" in
+    brew) run_brew uninstall "$package" ;;
+    apt) run_apt remove -y "$package" ;;
+    npm) run_npm uninstall -g "$package" ;;
+    pip)
+      run_pip uninstall --break-system-packages -y "$package"
+      remove_global_pip_executable "$executable"
+      ;;
+    # "release-archive" (pinned version+url+sha256) is retired from
+    # validate-manifest's accepted managers (Tarun, 2026-09-29: versions
+    # are never pinned) -- no CURRENT manifest.json can declare one, so
+    # install_one_tool no longer has a case for it. This removal arm stays
+    # so a device whose applied-manifest.json still remembers an old
+    # release-archive entry (agent-vault-cli, before this change) can
+    # still cleanly uninstall it the next time it reconciles; previous
+    # state is read straight from disk, never re-validated.
+    release-archive)
+      [[ "$executable" == /usr/local/bin/* ]] || {
+        echo "refusing unsafe release archive removal target: $executable" >&2
+        exit 1
+      }
+      if [[ "$mode" == apply ]]; then
+        rm -f -- "$executable"
+      else
+        echo "would remove pinned release executable: $executable"
+      fi
+      ;;
+    release-archive-latest)
+      [[ "$executable" == /usr/local/bin/* ]] || {
+        echo "refusing unsafe release archive removal target: $executable" >&2
+        exit 1
+      }
+      if [[ "$mode" == apply ]]; then
+        rm -f -- "$executable"
+      else
+        echo "would remove latest release executable: $executable"
+      fi
+      ;;
+    shim)
+      [[ "$executable" == /usr/local/bin/* ]] || {
+        echo "refusing unsafe shim removal target: $executable" >&2
+        exit 1
+      }
+      if [[ "$mode" == apply ]]; then
+        rm -f -- "$executable"
+      else
+        echo "would remove shim: $executable"
+      fi
+      ;;
+    repo-script)
+      if [[ "$mode" == apply ]]; then
+        remove_one_repo_script "$executable"
+      else
+        [[ "$executable" =~ ^/usr/local/bin/[A-Za-z0-9][A-Za-z0-9._-]*$ ]] || {
+          echo "refusing unsafe managed script removal target: $executable" >&2
+          exit 1
+        }
+        echo "would remove managed repo script: $executable"
+      fi
+      ;;
+    repo-dir)
+      removed_repo_dir_target="$(jq -r --arg id "$tool_id" '.[$id].target' "$previous_resolved_file")"
+      if [[ "$mode" == apply ]]; then
+        remove_one_repo_dir "$removed_repo_dir_target"
+      else
+        [[ "$removed_repo_dir_target" == "$repo_dir_libexec_root"/* ]] || {
+          echo "refusing unsafe repo-dir removal target: $removed_repo_dir_target" >&2
+          exit 1
+        }
+        echo "would remove repo dir: $removed_repo_dir_target"
+      fi
+      ;;
+    bun-compile)
+      [[ "$executable" == /usr/local/bin/* ]] || {
+        echo "refusing unsafe bun binary removal target: $executable" >&2
+        exit 1
+      }
+      if [[ "$mode" == apply ]]; then
+        rm -f -- "$executable"
+      else
+        echo "would remove bun binary: $executable"
+      fi
+      ;;
+    embedding-model)
+      if [[ "$mode" == apply ]]; then
+        [[ "$(id -u)" -eq 0 ]] || { echo "apply mode must run as root" >&2; exit 1; }
+        command -v bun >/dev/null 2>&1 || { echo "embedding-model requires bun; ensure bun installs before this tool" >&2; exit 1; }
+        (cd /tmp && sudo -u "$administrator" -H env PATH="${brew_bin%/*}:/usr/bin:/bin" \
+          bun "$repo_root/packages/fleet/src/install-embedding-model.ts" uninstall </dev/null)
+      else
+        echo "would remove embedding model cache: ~/.cache/adl-embedding/model (as $administrator)"
+      fi
+      ;;
+    *) echo "unsupported manager in previous manifest: $manager" >&2; exit 1 ;;
+  esac
+}
+
 # config.git_global_config: global git config for the administrator (the
 # account whose HOME the per-user deployers below also write to). Apply runs git as
 # that user (sudo -u -H) so ~/.gitconfig stays user-owned; plan/audit only
@@ -2194,111 +2350,7 @@ reconcile_surface_clis
 if [[ "$have_previous" -eq 1 ]]; then
   while IFS= read -r tool_id; do
     [[ -n "$tool_id" ]] || continue
-    if jq -e --arg id "$tool_id" '.config.protected_tools | index($id)' "$manifest" >/dev/null; then
-      echo "refusing to remove protected bootstrap tool: $tool_id" >&2
-      exit 1
-    fi
-    manager="$(jq -r --arg id "$tool_id" '.[$id].manager' "$previous_resolved_file")"
-    package="$(jq -r --arg id "$tool_id" '.[$id].package' "$previous_resolved_file")"
-    executable="$(jq -r --arg id "$tool_id" '.[$id].executable' "$previous_resolved_file")"
-    if is_in_place_bun_to_npm_migration "$tool_id"; then
-      if [[ "$mode" == apply ]]; then
-        echo "retired Bun compilation already removed for npm migration: $tool_id"
-      fi
-      continue
-    fi
-    if jq -e --arg manager "$manager" --arg package "$package" 'to_entries | any(.value.manager == $manager and .value.package == $package)' "$resolved_file" >/dev/null; then
-      echo "retain shared package after entry deletion: $manager:$package"
-      continue
-    fi
-    echo "explicit manifest deletion: uninstall $tool_id ($manager:$package)"
-    case "$manager" in
-      brew) run_brew uninstall "$package" ;;
-      apt) run_apt remove -y "$package" ;;
-      npm) run_npm uninstall -g "$package" ;;
-      pip)
-        run_pip uninstall --break-system-packages -y "$package"
-        remove_global_pip_executable "$executable"
-        ;;
-      release-archive)
-        [[ "$executable" == /usr/local/bin/* ]] || {
-          echo "refusing unsafe release archive removal target: $executable" >&2
-          exit 1
-        }
-        if [[ "$mode" == apply ]]; then
-          rm -f -- "$executable"
-        else
-          echo "would remove pinned release executable: $executable"
-        fi
-        ;;
-      release-archive-latest)
-        [[ "$executable" == /usr/local/bin/* ]] || {
-          echo "refusing unsafe release archive removal target: $executable" >&2
-          exit 1
-        }
-        if [[ "$mode" == apply ]]; then
-          rm -f -- "$executable"
-        else
-          echo "would remove latest release executable: $executable"
-        fi
-        ;;
-      shim)
-        [[ "$executable" == /usr/local/bin/* ]] || {
-          echo "refusing unsafe shim removal target: $executable" >&2
-          exit 1
-        }
-        if [[ "$mode" == apply ]]; then
-          rm -f -- "$executable"
-        else
-          echo "would remove shim: $executable"
-        fi
-        ;;
-      repo-script)
-        if [[ "$mode" == apply ]]; then
-          remove_one_repo_script "$executable"
-        else
-          [[ "$executable" =~ ^/usr/local/bin/[A-Za-z0-9][A-Za-z0-9._-]*$ ]] || {
-            echo "refusing unsafe managed script removal target: $executable" >&2
-            exit 1
-          }
-          echo "would remove managed repo script: $executable"
-        fi
-        ;;
-      repo-dir)
-        removed_repo_dir_target="$(jq -r --arg id "$tool_id" '.[$id].target' "$previous_resolved_file")"
-        if [[ "$mode" == apply ]]; then
-          remove_one_repo_dir "$removed_repo_dir_target"
-        else
-          [[ "$removed_repo_dir_target" == "$repo_dir_libexec_root"/* ]] || {
-            echo "refusing unsafe repo-dir removal target: $removed_repo_dir_target" >&2
-            exit 1
-          }
-          echo "would remove repo dir: $removed_repo_dir_target"
-        fi
-        ;;
-      bun-compile)
-        [[ "$executable" == /usr/local/bin/* ]] || {
-          echo "refusing unsafe bun binary removal target: $executable" >&2
-          exit 1
-        }
-        if [[ "$mode" == apply ]]; then
-          rm -f -- "$executable"
-        else
-          echo "would remove bun binary: $executable"
-        fi
-        ;;
-      embedding-model)
-        if [[ "$mode" == apply ]]; then
-          [[ "$(id -u)" -eq 0 ]] || { echo "apply mode must run as root" >&2; exit 1; }
-          command -v bun >/dev/null 2>&1 || { echo "embedding-model requires bun; ensure bun installs before this tool" >&2; exit 1; }
-          (cd /tmp && sudo -u "$administrator" -H env PATH="${brew_bin%/*}:/usr/bin:/bin" \
-            bun "$repo_root/packages/fleet/src/install-embedding-model.ts" uninstall </dev/null)
-        else
-          echo "would remove embedding model cache: ~/.cache/adl-embedding/model (as $administrator)"
-        fi
-        ;;
-      *) echo "unsupported manager in previous manifest: $manager" >&2; exit 1 ;;
-    esac
+    remove_one_manifest_entry "$tool_id"
   # Selects an id when it was deleted outright (absent from the current
   # manifest) OR retained but migrated to a different manager/package (e.g.
   # lean-ctx moving from npm:lean-ctx-bin to release-archive-latest:lean-ctx)

package/bin/validate-manifest

@@ -70,18 +70,19 @@ if ! jq -e '
   (.mac.devices.m3.surface_clis // [] | any(.name == "codex" and .manager == "brew" and .command == "brew" and .update_args == ["upgrade", "--cask", "codex"] and (.report_only // false) == false)) and
   (.mac.devices.m5.surface_clis // [] | any(.name == "codex" and .manager == "brew" and .command == "brew" and .update_args == ["upgrade", "--cask", "codex"] and (.report_only // false) == false)) and
   ([.mac.common.tools[], .linux.common.tools[], .mac.devices[].tools[], .linux.devices[].tools[]] |
-    all(.manager == "brew" or .manager == "apt" or .manager == "npm" or .manager == "pip" or .manager == "release-archive" or .manager == "release-archive-latest" or .manager == "shim" or .manager == "repo-script" or .manager == "repo-dir" or .manager == "bun-compile" or .manager == "embedding-model") and
+    all(.manager == "brew" or .manager == "apt" or .manager == "npm" or .manager == "pip" or .manager == "release-archive-latest" or .manager == "shim" or .manager == "repo-script" or .manager == "repo-dir" or .manager == "bun-compile" or .manager == "embedding-model") and
     all((.package | type) == "string" and (.package | length) > 0) and
     all((.executable | type) == "string" and (.executable | length) > 0) and
+    # Second review pass, 2026-09-29: the removal-path guard in bin/
+    # reconcile (executable_claimed_by_current_manifest) compares
+    # .executable paths lexically after normalizing a legacy, unvalidated
+    # previous-manifest path -- a CURRENT manifest must never need that
+    # normalization in the first place, so a "//" or "/./" segment is
+    # rejected here outright rather than silently accepted and normalized
+    # away later.
+    all((.executable | contains("//") | not) and (.executable | contains("/./") | not)) and
     all((.reason // null) == null or (.reason | type == "string" and length > 0)) and
-    all(if .manager == "release-archive" then
-      ((.version | type) == "string" and (.version | length) > 0) and
-      ((.url | type) == "string" and (.url | startswith("https://"))) and
-      ((.sha256 | type) == "string" and (.sha256 | test("^[0-9a-f]{64}$"))) and
-      ((.archive_executable | type) == "string" and
-        (.archive_executable | test("^[^/]") and (contains("..") | not))) and
-      (.executable | startswith("/usr/local/bin/"))
-    elif .manager == "release-archive-latest" then
+    all(if .manager == "release-archive-latest" then
       ((.repo | type) == "string" and (.repo | test("^[^/[:space:]]+/[^/[:space:]]+$"))) and
       ((.asset | type) == "string" and
         (.asset | test("^[^/]") and (contains("..") | not))) and
@@ -124,12 +125,13 @@ if ! jq -e '
       ((.dim | type) == "number") and
       (has("revision") | not) and (has("source_files") | not) and (has("artifact_files") | not)
     elif .manager == "npm" then
-      # .version is optional for npm: absent means update_policy=latest-stable
-      # tracks whatever npm resolves; present pins the install_one_tool
-      # $package@$version spec (Handoff 5, 2026-09-26, H4). No checksum field
-      # exists for npm -- there is no release-archive-style sha256 pin here,
-      # and none is required or accepted.
-      ((has("version") | not) or ((.version | type) == "string" and (.version | length) > 0)) and
+      # Tarun, 2026-09-29 (hard rule): versions are never pinned -- every
+      # fleet tool installs latest stable. .version on npm used to be an
+      # optional pin (Handoff 5, 2026-09-26, H4); it is refused outright now,
+      # the same way release-archive-latest already refuses one, and the
+      # same day the release-archive manager (pinned version+url+sha256) was
+      # removed from the accepted managers above entirely.
+      (has("version") | not) and
       # .allow_scripts (docs/operations/global-tools.md Topic 2, decided
       # 2026-09-28): an explicit, per-entry allow-list of dependency package
       # names whose install/postinstall scripts reconcile passes through as

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@amsterdamdatalabs/adl-agent-control-linux-x64",
-  "version": "0.1.5",
+  "version": "0.1.7",
   "description": "adl CLI binary for linux/x64 (agent identity + Azure DevOps front door — see docs/architecture/cli-design.md)",
   "license": "UNLICENSED",
   "os": [

package/packages/fleet/manifest.json

@@ -44,7 +44,7 @@
   "mac": {
     "common": {
       "tools": {
-        "agent-vault-cli": {"manager": "release-archive", "package": "agent-vault", "executable": "/usr/local/bin/agent-vault", "version": "0.39.3", "url": "https://github.com/Infisical/agent-vault/releases/download/v0.39.3/agent-vault_0.39.3_darwin_arm64.tar.gz", "sha256": "30e312f3016a489936ae27bc380f92bf715f3be88c35eba3030d55841d97dc14", "archive_executable": "agent-vault"},
+        "agent-vault-cli": {"manager": "release-archive-latest", "package": "agent-vault", "executable": "/usr/local/bin/agent-vault", "repo": "Infisical/agent-vault", "asset": "agent-vault_{version}_darwin_arm64.tar.gz", "checksums_asset": "checksums.txt", "archive_executable": "agent-vault"},
         "ast-grep": {"manager": "brew", "package": "ast-grep", "executable": "ast-grep"},
         "azure-cli": {"manager": "brew", "package": "azure-cli", "executable": "az"},
         "bun": {"manager": "brew", "package": "bun", "executable": "bun"},
@@ -57,7 +57,7 @@
         "docker-compose": {"manager": "brew", "package": "docker-compose", "executable": "docker-compose"},
         "docs-search": {"manager": "npm", "package": "@amsterdamdatalabs/enact-docs-search", "executable": "enact-docs-search", "allow_scripts": ["hnswlib-node", "onnxruntime-node", "sharp", "protobufjs"], "reason": "Separate search product that provides the search tool."},
         "adl": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-control", "executable": "adl"},
-        "adl-agent-id": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-id", "executable": "adl-agent-id", "version": "0.4.0", "reason": "Separate Go binary with its own trust boundary."},
+        "adl-agent-id": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-id", "executable": "adl-agent-id", "reason": "Separate Go binary with its own trust boundary."},
         "fd": {"manager": "brew", "package": "fd", "executable": "fd"},
         "git": {"manager": "brew", "package": "git", "executable": "git"},
         "jq": {"manager": "brew", "package": "jq", "executable": "jq"},
@@ -134,7 +134,7 @@
     "common": {
       "os_upgrade": true,
       "tools": {
-        "agent-vault-cli": {"manager": "release-archive", "package": "agent-vault", "executable": "/usr/local/bin/agent-vault", "version": "0.39.3", "url": "https://github.com/Infisical/agent-vault/releases/download/v0.39.3/agent-vault_0.39.3_linux_amd64.tar.gz", "sha256": "edacbddb03c6f4221515d9875c3a7b0943c71434708e7fd13be0f7635a7baecc", "archive_executable": "agent-vault"},
+        "agent-vault-cli": {"manager": "release-archive-latest", "package": "agent-vault", "executable": "/usr/local/bin/agent-vault", "repo": "Infisical/agent-vault", "asset": "agent-vault_{version}_linux_amd64.tar.gz", "checksums_asset": "checksums.txt", "archive_executable": "agent-vault"},
         "ast-grep": {"manager": "brew", "package": "ast-grep", "executable": "ast-grep"},
         "azure-cli": {"manager": "brew", "package": "azure-cli", "executable": "az"},
         "bun": {"manager": "brew", "package": "bun", "executable": "bun"},
@@ -147,7 +147,7 @@
         "docker-compose": {"manager": "brew", "package": "docker-compose", "executable": "docker-compose"},
         "docs-search": {"manager": "npm", "package": "@amsterdamdatalabs/enact-docs-search", "executable": "enact-docs-search", "allow_scripts": ["hnswlib-node", "onnxruntime-node", "sharp", "protobufjs"], "reason": "Separate search product that provides the search tool."},
         "adl": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-control", "executable": "adl"},
-        "adl-agent-id": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-id", "executable": "adl-agent-id", "version": "0.4.0", "reason": "Separate Go binary with its own trust boundary."},
+        "adl-agent-id": {"manager": "npm", "package": "@amsterdamdatalabs/adl-agent-id", "executable": "adl-agent-id", "reason": "Separate Go binary with its own trust boundary."},
         "fd": {"manager": "brew", "package": "fd", "executable": "fd"},
         "git": {"manager": "brew", "package": "git", "executable": "git"},
         "jq": {"manager": "brew", "package": "jq", "executable": "jq"},

package/packages/fleet/manifest.schema.json

@@ -93,7 +93,7 @@
       "additionalProperties": false,
       "required": ["manager", "package", "executable"],
       "properties": {
-        "manager": {"enum": ["apt", "brew", "npm", "pip", "release-archive", "release-archive-latest", "shim", "repo-script", "bun-compile", "embedding-model"]},
+        "manager": {"enum": ["apt", "brew", "npm", "pip", "release-archive-latest", "shim", "repo-script", "bun-compile", "embedding-model"]},
         "package": {"type": "string", "minLength": 1},
         "executable": {"type": "string", "minLength": 1},
         "version": {"type": "string", "minLength": 1},
@@ -110,17 +110,18 @@
         "reason": {"type": "string", "minLength": 1}
       },
       "allOf": [
-        {
-          "if": {"properties": {"manager": {"const": "release-archive"}}},
-          "then": {"required": ["version", "url", "sha256", "archive_executable"]}
-        },
         {
           "if": {"properties": {"manager": {"const": "release-archive-latest"}}},
           "then": {
             "required": ["repo", "asset", "archive_executable"],
+            "not": {"anyOf": [{"required": ["version"]}, {"required": ["url"]}, {"required": ["sha256"]}]},
             "properties": {"executable": {"pattern": "^/usr/local/bin/"}}
           }
         },
+        {
+          "if": {"properties": {"manager": {"const": "npm"}}},
+          "then": {"not": {"required": ["version"]}}
+        },
         {
           "if": {"properties": {"manager": {"const": "shim"}}},
           "then": {"properties": {"executable": {"pattern": "^/usr/local/bin/"}}}

package/packages/repo-controls/src/gitignore-block.ts

@@ -120,6 +120,23 @@ export const GITIGNORE_BLOCK_LINES: readonly string[] = [
   '# adl process convention: scratch and throwaway work, never committed',
   '/.scratchpad/',
   'packages/*/.scratchpad/',
+  '',
+  '# fleet tools that write into every checkout: docs-search index, code-review-graph, compliance pytest',
+  '.cache/',
+  '.code-review-graph/',
+  '.codegraph/',
+  '.pytest_cache/',
+  '',
+  '# dependencies, OS and log noise',
+  'node_modules/',
+  '.DS_Store',
+  '*.log',
+  '',
+  '# local secrets and per-user agent settings, never committed',
+  '.env',
+  '.env.*',
+  '!.env.example',
+  '.claude/settings.local.json',
 ] as const
 
 interface SplitText {