@amalgm/shell 0.1.164-preview.36824980905 → 0.1.164-preview.36833169660

package/PURPOSE.md

@@ -1659,9 +1659,17 @@ after adoption.
     device and inode are the physical key exactly as stored, and its
     millisecond times state neither a source signature nor a content
     boundary, so a converted row holds neither and its first examination
-    reads every leaf again. The qualified profile gathers no planner
-    statistics, but statistics already present are kept, never treated as
-    corruption.
+    reads every leaf again. It also stored the user's root at the route it
+    was given, while every root is found by its physical route (its
+    synchronization address, `src/sync-address.ts`), so conversion moves each
+    root's rows onto that route: a root left at another spelling of it
+    (`/var` for `/private/var`, an 8.3 short name for a long one) would never
+    be found again, and its ground would be declared a second time under a
+    new identity. A root on a volume that is not mounted keeps its route; it
+    has nothing to resolve now, and only the user's own root was stored
+    unresolved. The
+    qualified profile gathers no planner statistics, but statistics already
+    present are kept, never treated as corruption.
 
 76. **Replication state belongs to the authority that ordered it.** This
     machine's entity authority is named by a contract-scoped id, so a registry

package/dist/cli.js

@@ -115,10 +115,10 @@ async function runSelectedCli(argv, shutdown, profile) {
                 message: error instanceof Error ? error.message : String(error),
             })}\n`);
         },
-        // One entity's Apply lane failing never stops the others; it must still
-        // be visible in the product log rather than swallowed.
-        onApplyError: (error) => {
-            process.stdout.write(`AMALGM_APPLY_ERROR ${JSON.stringify({
+        // A failed background pass never stops the others; it must still be
+        // visible in the product log rather than swallowed.
+        onBackgroundError: (error) => {
+            process.stdout.write(`AMALGM_BACKGROUND_ERROR ${JSON.stringify({
                 message: error instanceof Error ? error.message : String(error),
             })}\n`);
         },

package/dist/cli.js.map

@@ -1 +1 @@
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package/dist/ground-database.js

@@ -84,161 +84,166 @@ export function migrateGroundDatabase(file) {
     ensurePrivateDir(dirname(file));
     const database = configureGroundConnection(openFileDatabase(file));
     try {
-        requireCurrentJournal(database, columnsOf(database, "snapshot_publications"));
-        // A seal is disposable reuse evidence: another shape is dropped, never read.
-        const sealColumns = columnsOf(database, "repository_git_evidence");
-        if (sealColumns.size > 0 && !sealColumns.has("selection_key"))
-            database.exec("DROP TABLE repository_git_evidence");
-        database.exec(`
-      CREATE TABLE IF NOT EXISTS ground_identity (
-        singleton INTEGER PRIMARY KEY CHECK (singleton = 1),
-        user_id TEXT NOT NULL,
-        user_email TEXT NOT NULL,
-        device_id TEXT NOT NULL
-      );
-      CREATE TABLE IF NOT EXISTS record_outbox (
-        local_sequence INTEGER PRIMARY KEY AUTOINCREMENT,
-        mutation_id TEXT NOT NULL UNIQUE,
-        authority_id TEXT NOT NULL,
-        entity_id TEXT NOT NULL,
-        record_json TEXT NOT NULL,
-        status TEXT NOT NULL CHECK(status IN ('pending', 'accepted')),
-        global_sequence INTEGER,
-        created_at INTEGER NOT NULL,
-        accepted_at INTEGER,
-        CHECK((status = 'pending' AND global_sequence IS NULL AND accepted_at IS NULL)
-           OR (status = 'accepted' AND global_sequence > 0 AND accepted_at IS NOT NULL))
-      );
-      CREATE TABLE IF NOT EXISTS record_inbox (
-        authority_id TEXT NOT NULL,
-        entity_id TEXT NOT NULL,
-        global_sequence INTEGER NOT NULL CHECK(global_sequence > 0),
-        delivery_sequence INTEGER NOT NULL CHECK(delivery_sequence > 0),
-        mutation_id TEXT NOT NULL,
-        record_json TEXT NOT NULL,
-        received_at INTEGER NOT NULL,
-        resolved_at INTEGER,
-        PRIMARY KEY(entity_id, global_sequence),
-        UNIQUE(entity_id, mutation_id),
-        UNIQUE(authority_id, delivery_sequence)
-      );
-      CREATE TABLE IF NOT EXISTS entity_receive_cursors (
-        entity_id TEXT PRIMARY KEY,
-        authority_id TEXT NOT NULL,
-        received_through INTEGER NOT NULL CHECK(received_through >= 0)
-      );
-      CREATE TABLE IF NOT EXISTS authority_delivery_cursors (
-        authority_id TEXT PRIMARY KEY,
-        received_through INTEGER NOT NULL CHECK(received_through >= 0),
-        history_floor INTEGER NOT NULL DEFAULT 0 CHECK(history_floor >= 0)
-      );
-      CREATE TABLE IF NOT EXISTS authority_snapshot_baselines (
-        authority_id TEXT PRIMARY KEY,
-        delivery_sequence INTEGER NOT NULL CHECK(delivery_sequence >= 0)
-      );
-      ${SNAPSHOT_PUBLICATIONS_SCHEMA}
-      CREATE TABLE IF NOT EXISTS constructs (
-        uuid TEXT PRIMARY KEY,
-        type TEXT NOT NULL,
-        name TEXT NOT NULL,
-        status TEXT NOT NULL,
-        version TEXT NOT NULL,
-        payload_version TEXT,
-        updated_at_ms INTEGER NOT NULL
-      );
-      CREATE TABLE IF NOT EXISTS entity_apply_state (
-        entity_id TEXT PRIMARY KEY,
-        authority_id TEXT NOT NULL,
-        resolved_through INTEGER NOT NULL CHECK(resolved_through >= 0),
-        materialized_sequence INTEGER,
-        materialized_record_json TEXT,
-        CHECK((materialized_sequence IS NULL AND materialized_record_json IS NULL)
-           OR (materialized_sequence > 0 AND materialized_record_json IS NOT NULL))
-      );
-      CREATE TABLE IF NOT EXISTS entity_apply_intents (
-        entity_id TEXT PRIMARY KEY,
-        authority_id TEXT NOT NULL,
-        intent_json TEXT NOT NULL,
-        recovery_location TEXT,
-        retirement_json TEXT
-      );
-      CREATE TABLE IF NOT EXISTS workspace_add_intents (
-        workspace_uuid TEXT PRIMARY KEY,
-        destination_path TEXT NOT NULL UNIQUE,
-        intent_json TEXT NOT NULL
-      );
-      CREATE TABLE IF NOT EXISTS repository_git_evidence (
-        uuid TEXT PRIMARY KEY,
-        fingerprint TEXT NOT NULL,
-        observed_payload TEXT NOT NULL,
-        identity_hash TEXT NOT NULL,
-        selection_key TEXT,
-        selected_payload TEXT,
-        selected_transport TEXT,
-        CHECK((selection_key IS NULL) = (selected_payload IS NULL)
-          AND (selection_key IS NULL) = (selected_transport IS NULL))
-      );
-      CREATE TABLE IF NOT EXISTS detect_dispositions (
-        sequence INTEGER PRIMARY KEY AUTOINCREMENT,
-        event_id TEXT NOT NULL UNIQUE,
-        incarnation TEXT NOT NULL,
-        fact TEXT NOT NULL CHECK(fact IN ('ready', 'outcome', 'observation')),
-        collection_id TEXT,
-        recorded_at INTEGER NOT NULL,
-        event_json TEXT NOT NULL,
-        CHECK(fact = 'observation' OR collection_id IS NOT NULL)
-      );
-      CREATE INDEX IF NOT EXISTS detect_dispositions_by_collection
-        ON detect_dispositions(collection_id, fact) WHERE collection_id IS NOT NULL;
-      CREATE INDEX IF NOT EXISTS record_inbox_apply
-        ON record_inbox(authority_id, entity_id, global_sequence);
-      CREATE INDEX IF NOT EXISTS record_inbox_entity_apply
-        ON record_inbox(entity_id, global_sequence DESC);
-      CREATE INDEX IF NOT EXISTS record_outbox_pending
-        ON record_outbox(status, local_sequence);
-      CREATE INDEX IF NOT EXISTS record_outbox_pending_entity
-        ON record_outbox(status, entity_id, local_sequence);
-      CREATE INDEX IF NOT EXISTS record_outbox_local_work
-        ON record_outbox(authority_id, entity_id, global_sequence);
-    `);
-        if (!columnsOf(database, "record_inbox").has("resolved_at")) {
-            database.exec("ALTER TABLE record_inbox ADD COLUMN resolved_at INTEGER");
-        }
-        // An intent journaled before Apply kept a recovery locator or a
-        // retirement holds neither.
-        const intentColumns = columnsOf(database, "entity_apply_intents");
-        for (const column of ["recovery_location", "retirement_json"]) {
-            if (!intentColumns.has(column))
-                database.exec(`ALTER TABLE entity_apply_intents ADD COLUMN ${column} TEXT`);
-        }
-        // A cursor that predates its floor may have jumped at any adopted
-        // snapshot, so the largest adopted baseline is its only honest floor.
-        if (!columnsOf(database, "authority_delivery_cursors").has("history_floor")) {
-            database.exec(`ALTER TABLE authority_delivery_cursors
-        ADD COLUMN history_floor INTEGER NOT NULL DEFAULT 0 CHECK(history_floor >= 0)`);
-            database.exec(`UPDATE authority_delivery_cursors SET history_floor = MIN(received_through, COALESCE(
-        (SELECT delivery_sequence FROM authority_snapshot_baselines AS baseline
-          WHERE baseline.authority_id = authority_delivery_cursors.authority_id), 0))`);
-        }
-        database.exec("DROP INDEX IF EXISTS record_inbox_delivery");
-        // Resolved history is retained; readers of unresolved work pay only for it.
-        database.exec(`CREATE INDEX IF NOT EXISTS record_inbox_unresolved
-      ON record_inbox(authority_id, entity_id, global_sequence) WHERE resolved_at IS NULL`);
-        const inventories = ensureInventorySchema(database);
-        ensureGroundDifferences(database);
-        database.exec("DROP TABLE IF EXISTS mutation_journal");
-        // Once per file per process, like the migration: every connection this
-        // process opens later reads the same epoch.
-        beginGroundEpoch(database);
-        const count = (table) => database.prepare(`SELECT COUNT(*) FROM ${table}`).pluck().get();
-        return {
-            incarnation: groundIncarnation(database),
-            ...inventories,
-            entities: count("entity_rows"),
-            notebook: count("notebook_rows"),
-            roots: count("ground_roots"),
-            migrationMs: performance.now() - started,
-        };
+        // One transaction: a migration that cannot complete leaves the file
+        // exactly as it was, never between two shapes. Each step's own
+        // transaction nests inside it.
+        return database.transaction(() => {
+            requireCurrentJournal(database, columnsOf(database, "snapshot_publications"));
+            // A seal is disposable reuse evidence: another shape is dropped, never read.
+            const sealColumns = columnsOf(database, "repository_git_evidence");
+            if (sealColumns.size > 0 && !sealColumns.has("selection_key"))
+                database.exec("DROP TABLE repository_git_evidence");
+            database.exec(`
+        CREATE TABLE IF NOT EXISTS ground_identity (
+          singleton INTEGER PRIMARY KEY CHECK (singleton = 1),
+          user_id TEXT NOT NULL,
+          user_email TEXT NOT NULL,
+          device_id TEXT NOT NULL
+        );
+        CREATE TABLE IF NOT EXISTS record_outbox (
+          local_sequence INTEGER PRIMARY KEY AUTOINCREMENT,
+          mutation_id TEXT NOT NULL UNIQUE,
+          authority_id TEXT NOT NULL,
+          entity_id TEXT NOT NULL,
+          record_json TEXT NOT NULL,
+          status TEXT NOT NULL CHECK(status IN ('pending', 'accepted')),
+          global_sequence INTEGER,
+          created_at INTEGER NOT NULL,
+          accepted_at INTEGER,
+          CHECK((status = 'pending' AND global_sequence IS NULL AND accepted_at IS NULL)
+             OR (status = 'accepted' AND global_sequence > 0 AND accepted_at IS NOT NULL))
+        );
+        CREATE TABLE IF NOT EXISTS record_inbox (
+          authority_id TEXT NOT NULL,
+          entity_id TEXT NOT NULL,
+          global_sequence INTEGER NOT NULL CHECK(global_sequence > 0),
+          delivery_sequence INTEGER NOT NULL CHECK(delivery_sequence > 0),
+          mutation_id TEXT NOT NULL,
+          record_json TEXT NOT NULL,
+          received_at INTEGER NOT NULL,
+          resolved_at INTEGER,
+          PRIMARY KEY(entity_id, global_sequence),
+          UNIQUE(entity_id, mutation_id),
+          UNIQUE(authority_id, delivery_sequence)
+        );
+        CREATE TABLE IF NOT EXISTS entity_receive_cursors (
+          entity_id TEXT PRIMARY KEY,
+          authority_id TEXT NOT NULL,
+          received_through INTEGER NOT NULL CHECK(received_through >= 0)
+        );
+        CREATE TABLE IF NOT EXISTS authority_delivery_cursors (
+          authority_id TEXT PRIMARY KEY,
+          received_through INTEGER NOT NULL CHECK(received_through >= 0),
+          history_floor INTEGER NOT NULL DEFAULT 0 CHECK(history_floor >= 0)
+        );
+        CREATE TABLE IF NOT EXISTS authority_snapshot_baselines (
+          authority_id TEXT PRIMARY KEY,
+          delivery_sequence INTEGER NOT NULL CHECK(delivery_sequence >= 0)
+        );
+        ${SNAPSHOT_PUBLICATIONS_SCHEMA}
+        CREATE TABLE IF NOT EXISTS constructs (
+          uuid TEXT PRIMARY KEY,
+          type TEXT NOT NULL,
+          name TEXT NOT NULL,
+          status TEXT NOT NULL,
+          version TEXT NOT NULL,
+          payload_version TEXT,
+          updated_at_ms INTEGER NOT NULL
+        );
+        CREATE TABLE IF NOT EXISTS entity_apply_state (
+          entity_id TEXT PRIMARY KEY,
+          authority_id TEXT NOT NULL,
+          resolved_through INTEGER NOT NULL CHECK(resolved_through >= 0),
+          materialized_sequence INTEGER,
+          materialized_record_json TEXT,
+          CHECK((materialized_sequence IS NULL AND materialized_record_json IS NULL)
+             OR (materialized_sequence > 0 AND materialized_record_json IS NOT NULL))
+        );
+        CREATE TABLE IF NOT EXISTS entity_apply_intents (
+          entity_id TEXT PRIMARY KEY,
+          authority_id TEXT NOT NULL,
+          intent_json TEXT NOT NULL,
+          recovery_location TEXT,
+          retirement_json TEXT
+        );
+        CREATE TABLE IF NOT EXISTS workspace_add_intents (
+          workspace_uuid TEXT PRIMARY KEY,
+          destination_path TEXT NOT NULL UNIQUE,
+          intent_json TEXT NOT NULL
+        );
+        CREATE TABLE IF NOT EXISTS repository_git_evidence (
+          uuid TEXT PRIMARY KEY,
+          fingerprint TEXT NOT NULL,
+          observed_payload TEXT NOT NULL,
+          identity_hash TEXT NOT NULL,
+          selection_key TEXT,
+          selected_payload TEXT,
+          selected_transport TEXT,
+          CHECK((selection_key IS NULL) = (selected_payload IS NULL)
+            AND (selection_key IS NULL) = (selected_transport IS NULL))
+        );
+        CREATE TABLE IF NOT EXISTS detect_dispositions (
+          sequence INTEGER PRIMARY KEY AUTOINCREMENT,
+          event_id TEXT NOT NULL UNIQUE,
+          incarnation TEXT NOT NULL,
+          fact TEXT NOT NULL CHECK(fact IN ('ready', 'outcome', 'observation')),
+          collection_id TEXT,
+          recorded_at INTEGER NOT NULL,
+          event_json TEXT NOT NULL,
+          CHECK(fact = 'observation' OR collection_id IS NOT NULL)
+        );
+        CREATE INDEX IF NOT EXISTS detect_dispositions_by_collection
+          ON detect_dispositions(collection_id, fact) WHERE collection_id IS NOT NULL;
+        CREATE INDEX IF NOT EXISTS record_inbox_apply
+          ON record_inbox(authority_id, entity_id, global_sequence);
+        CREATE INDEX IF NOT EXISTS record_inbox_entity_apply
+          ON record_inbox(entity_id, global_sequence DESC);
+        CREATE INDEX IF NOT EXISTS record_outbox_pending
+          ON record_outbox(status, local_sequence);
+        CREATE INDEX IF NOT EXISTS record_outbox_pending_entity
+          ON record_outbox(status, entity_id, local_sequence);
+        CREATE INDEX IF NOT EXISTS record_outbox_local_work
+          ON record_outbox(authority_id, entity_id, global_sequence);
+      `);
+            if (!columnsOf(database, "record_inbox").has("resolved_at")) {
+                database.exec("ALTER TABLE record_inbox ADD COLUMN resolved_at INTEGER");
+            }
+            // An intent journaled before Apply kept a recovery locator or a
+            // retirement holds neither.
+            const intentColumns = columnsOf(database, "entity_apply_intents");
+            for (const column of ["recovery_location", "retirement_json"]) {
+                if (!intentColumns.has(column))
+                    database.exec(`ALTER TABLE entity_apply_intents ADD COLUMN ${column} TEXT`);
+            }
+            // A cursor that predates its floor may have jumped at any adopted
+            // snapshot, so the largest adopted baseline is its only honest floor.
+            if (!columnsOf(database, "authority_delivery_cursors").has("history_floor")) {
+                database.exec(`ALTER TABLE authority_delivery_cursors
+          ADD COLUMN history_floor INTEGER NOT NULL DEFAULT 0 CHECK(history_floor >= 0)`);
+                database.exec(`UPDATE authority_delivery_cursors SET history_floor = MIN(received_through, COALESCE(
+          (SELECT delivery_sequence FROM authority_snapshot_baselines AS baseline
+            WHERE baseline.authority_id = authority_delivery_cursors.authority_id), 0))`);
+            }
+            database.exec("DROP INDEX IF EXISTS record_inbox_delivery");
+            // Resolved history is retained; readers of unresolved work pay only for it.
+            database.exec(`CREATE INDEX IF NOT EXISTS record_inbox_unresolved
+        ON record_inbox(authority_id, entity_id, global_sequence) WHERE resolved_at IS NULL`);
+            const inventories = ensureInventorySchema(database);
+            ensureGroundDifferences(database);
+            database.exec("DROP TABLE IF EXISTS mutation_journal");
+            // Once per file per process, like the migration: every connection this
+            // process opens later reads the same epoch.
+            beginGroundEpoch(database);
+            const count = (table) => database.prepare(`SELECT COUNT(*) FROM ${table}`).pluck().get();
+            return {
+                incarnation: groundIncarnation(database),
+                ...inventories,
+                entities: count("entity_rows"),
+                notebook: count("notebook_rows"),
+                roots: count("ground_roots"),
+                migrationMs: performance.now() - started,
+            };
+        })();
     }
     finally {
         database.close();

package/dist/ground-database.js.map

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package/dist/ground-inventory-schema.js

@@ -6,7 +6,10 @@
  * O/B view. It is storage bookkeeping, never declaration, binding or
  * materialization truth. Generations are opaque identities, never ordered. */
 import { randomUUID } from "node:crypto";
+import { existsSync } from "node:fs";
+import { parse, sep } from "node:path";
 import { INVENTORY_ROWS, inventoryColumns } from "./ground-row.js";
+import { physicalPath } from "./sync-address.js";
 const INVENTORIES = ["entities", "detection_notebook"];
 const ROW_COLUMNS = `
       resource_id TEXT NOT NULL,
@@ -136,9 +139,10 @@ function flatSources(inventory, present) {
 }
 /** One transaction: the flat tables step aside, their rows are copied under
  * one generation per root shared by both inventories, the views must then
- * reproduce every flat row's stored values exactly, and only then are the
- * flat tables dropped. A failure rolls everything back. Rows move as
- * storage; no ground write, stamp, history or Record is produced. */
+ * reproduce every flat row's stored values exactly, each root is addressed
+ * at its physical route, and only then are the flat tables dropped. A
+ * failure rolls everything back. Rows move as storage; no ground write,
+ * stamp, history or Record is produced. */
 function convertFlatInventories(database) {
     return database.transaction(() => {
         const flat = { entities: "flat_entities", detection_notebook: "flat_notebook" };
@@ -176,9 +180,36 @@ function convertFlatInventories(database) {
                 throw new Error(`the converted ${inventory} view does not reproduce its flat inventory`);
         }
         const validationMs = performance.now() - validating;
+        addressRootsPhysically(database);
         for (const inventory of INVENTORIES)
             database.exec(`DROP TABLE ${flat[inventory]}`);
         return validationMs;
     })();
 }
+/** The flat form stored the user's root at the route it was given; the
+ * generation form stores every root at its physical route (sync-address.ts)
+ * and each row beneath it. Routes are compared as strings, so each converted
+ * root moves onto its physical route: one left at another spelling of it
+ * (`/var/...` for `/private/var/...`, or a short name for a long one) is
+ * never found again, and its ground would be declared a second time under a
+ * new identity. A root on a volume that is not mounted (an unplugged drive)
+ * has no spelling to resolve now and keeps its route: only the user's own
+ * root was stored unresolved, and it lives where the runtime runs. */
+function addressRootsPhysically(database) {
+    const routes = database.prepare(`SELECT root_uuid AS root, absolute_path AS route FROM entity_rows
+    WHERE relative_path = '' UNION SELECT root_uuid, absolute_path FROM notebook_rows WHERE relative_path = ''`)
+        .all();
+    for (const { root, route } of routes) {
+        if (!existsSync(parse(route).root))
+            continue;
+        const physical = physicalPath(route);
+        if (physical === route)
+            continue;
+        for (const table of Object.values(INVENTORY_ROWS)) {
+            database.prepare(`UPDATE ${table} SET absolute_path = ? || substr(absolute_path, ?)
+        WHERE root_uuid = ? AND (absolute_path = ? OR substr(absolute_path, 1, ?) = ?)`)
+                .run(physical, route.length + 1, root, route, route.length + 1, route + sep);
+        }
+    }
+}
 //# sourceMappingURL=ground-inventory-schema.js.map

package/dist/ground-inventory-schema.js.map

@@ -1 +1 @@
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package/dist/machine-host.d.ts

@@ -43,7 +43,8 @@ export interface MachineHostOptions {
     readonly onDetectScan?: (evidence: DetectScanEvidence) => void;
     /** Apply progress and retry evidence for product diagnostics. */
     readonly onApplyStage?: (evidence: EntityApplyStageEvidence) => void;
-    readonly onApplyError?: (error: unknown) => void;
+    /** A failed background pass that stays durable and retries. */
+    readonly onBackgroundError?: (error: unknown) => void;
     /** Examination hook for proving each durable Add crash boundary. */
     readonly onWorkspaceAddStage?: (evidence: {
         readonly workspaceId: string;

package/dist/machine-host.js

@@ -199,7 +199,7 @@ export class MachineHost {
                         onWatchHealth: this.options.onWatchHealth,
                         onDetectScan: this.options.onDetectScan,
                         onApplyStage: this.options.onApplyStage,
-                        onApplyError: this.options.onApplyError,
+                        onBackgroundError: this.options.onBackgroundError,
                         onWorkspaceAddStage: this.options.onWorkspaceAddStage,
                         onFilesStage: this.stages.observe,
                         filesTraceActive: () => this.stages.listening,