@aligndottech/cli 0.63.0 → 0.64.1

package/dist/lib/value-rollup.d.ts

@@ -1,5 +1,5 @@
 /**
- * ALI-215: the "what your graph did for you" value rollup. Aggregates the gateway's
+ * The "what your graph did for you" value rollup. Aggregates the gateway's
  * per-tenant value signals into one normalized shape the status readout renders. Each
  * source is fetched independently and a failure nulls only its own field - an old gateway
  * missing /decisions/reuse-rate must not blank the whole readout.
@@ -9,7 +9,7 @@ export interface ValueRollup {
     decisions: number;
     conflictsCaught: number;
     /**
-     * Decisions linked by embedding similarity alone (ALI-503). Deliberately a separate
+     * Decisions linked by embedding similarity alone. Deliberately a separate
      * number from conflictsCaught: an embedding says two decisions are about the same thing,
      * never that they disagree. Populated offline only; the cloud rollup has richer signals.
      */
@@ -19,7 +19,7 @@ export interface ValueRollup {
     reuseRate: number | null;
     healthGrade: string | null;
     /**
-     * ALI-796: unresolved-ref gaps the local graph can name for itself - a decision
+     * Unresolved-ref gaps the local graph can name for itself - a decision
      * cites a Jira key, but nothing has connected Jira yet. Local-only: decision_refs
      * lives in the local SQLite graph (local-db.ts), so the hosted gateway has none to
      * report and fetchValueRollup always sets this to [].
@@ -27,7 +27,7 @@ export interface ValueRollup {
     gaps: UnresolvedGap[];
 }
 /**
- * Decisions in a local graph before the sharing prompt is earned (ALI-503).
+ * Decisions in a local graph before the sharing prompt is earned.
  *
  * The prompt used to be gated on conflictsCaught, which offline was fabricated from cosine
  * similarity, so a manufactured detection was what asked the user for money. Nothing writes
@@ -59,7 +59,7 @@ export interface ValueRollupClient {
 /**
  * `days` is the window the impact and reuse-rate endpoints measure over. Undefined keeps
  * each endpoint's own default (30), which is what `align status` has always read; the
- * second-run card passes 7 so it can honestly say "this week" (ALI-950).
+ * second-run card passes 7 so it can honestly say "this week".
  */
 export declare function fetchValueRollup(client: ValueRollupClient, opts?: {
     days?: number;
@@ -81,7 +81,7 @@ export interface LocalRollupDb {
     listLinks(filter?: {
         relation?: string;
     }): unknown[];
-    /** ALI-796: every ref across every decision, for the gap resolver. */
+    /** Every ref across every decision, for the gap resolver. */
     getAllRefs(): Array<{
         decisionId: string;
         ref: string;
@@ -91,7 +91,7 @@ export interface LocalRollupDb {
 /**
  * The offline honest subset: decisions + conflict/duplicate/supersession counts derivable
  * from the local decision_links table. Reuse rate and composite health need the gateway,
- * so they are null here - we do NOT fabricate them offline (ALI-215 decision).
+ * so they are null here - we do NOT fabricate them offline.
  *
  * `isConnected` defaults to "nothing is connected", which only matters when the graph
  * actually carries refs - both real callers (status.ts, local.ts) always pass a real

package/dist/lib/value-rollup.d.ts.map

@@ -1 +1 @@
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package/dist/lib/value-rollup.js

@@ -1,5 +1,5 @@
 /**
- * ALI-215: the "what your graph did for you" value rollup. Aggregates the gateway's
+ * The "what your graph did for you" value rollup. Aggregates the gateway's
  * per-tenant value signals into one normalized shape the status readout renders. Each
  * source is fetched independently and a failure nulls only its own field - an old gateway
  * missing /decisions/reuse-rate must not blank the whole readout.
@@ -7,7 +7,7 @@
 import { statusGapLine, unresolvedGaps } from './connect-prompt.js';
 import { inviteNudgeLine } from './invite-prompt.js';
 /**
- * Decisions in a local graph before the sharing prompt is earned (ALI-503).
+ * Decisions in a local graph before the sharing prompt is earned.
  *
  * The prompt used to be gated on conflictsCaught, which offline was fabricated from cosine
  * similarity, so a manufactured detection was what asked the user for money. Nothing writes
@@ -27,7 +27,7 @@ async function settle(p) {
 /**
  * `days` is the window the impact and reuse-rate endpoints measure over. Undefined keeps
  * each endpoint's own default (30), which is what `align status` has always read; the
- * second-run card passes 7 so it can honestly say "this week" (ALI-950).
+ * second-run card passes 7 so it can honestly say "this week".
  */
 export async function fetchValueRollup(client, opts = {}) {
     const [stats, impact, links, reuse, health] = await Promise.all([
@@ -59,15 +59,15 @@ export async function fetchValueRollup(client, opts = {}) {
  */
 export function renderValueReadout(r, opts) {
     const reuse = r.reuseRate === null ? 'n/a' : `${Math.round(r.reuseRate * 100)}%`;
-    // ALI-503: offline, nothing can write a conflict link, so "N conflicts caught" was either
+    // Offline, nothing can write a conflict link, so "N conflicts caught" was either
     // fabricated from cosine similarity or a permanent zero that reads as a broken counter.
     // Report what the local graph genuinely knows instead.
     const lines = [`  ${r.decisions} decisions in your graph`];
     if (opts.mode === 'local') {
-        // ALI-794: offline, nothing writes a similarity, duplicate or supersession link on a
+        // Offline, nothing writes a similarity, duplicate or supersession link on a
         // first run, so all three are structurally zero and a row of them reads as a broken
         // dashboard to someone ninety seconds into the tool. HIDDEN AT ZERO, never deleted -
-        // localValueRollup still counts the real relations (ALI-503's positive control), so a
+        // localValueRollup still counts the real relations (the positive control), so a
         // genuine one appears the moment it exists. Deleting the line would make that
         // impossible and would look identical from here.
         if (r.similarDecisions > 0)
@@ -92,7 +92,7 @@ export function renderValueReadout(r, opts) {
         lines.push('');
         lines.push('  Reuse rate and health need the cloud graph - run `align login` to see them.');
     }
-    // ALI-796: name the gaps the graph can see for itself - one line per platform, only
+    // Name the gaps the graph can see for itself - one line per platform, only
     // when there is one to name. Local-only, same as similarDecisions above.
     if (r.gaps.length) {
         lines.push('');
@@ -100,12 +100,12 @@ export function renderValueReadout(r, opts) {
             lines.push(statusGapLine(gap));
     }
     // similarDecisions is deliberately absent: buying the upsell with a cosine artefact is
-    // the defect this ticket exists to remove, not a smaller version of it (ALI-503).
+    // the defect this ticket exists to remove, not a smaller version of it.
     const hasValue = (opts.mode === 'local' && r.decisions >= LOCAL_SHARE_THRESHOLD)
         || r.conflictsCaught > 0 || r.duplicates > 0 || r.supersessions > 0;
     if (hasValue) {
         lines.push('');
-        // ALI-938: a command someone can run right there, not a URL to go figure out later.
+        // A command someone can run right there, not a URL to go figure out later.
         lines.push(`  ${inviteNudgeLine('value')}`);
     }
     return lines.join('\n');
@@ -113,7 +113,7 @@ export function renderValueReadout(r, opts) {
 /**
  * The offline honest subset: decisions + conflict/duplicate/supersession counts derivable
  * from the local decision_links table. Reuse rate and composite health need the gateway,
- * so they are null here - we do NOT fabricate them offline (ALI-215 decision).
+ * so they are null here - we do NOT fabricate them offline.
  *
  * `isConnected` defaults to "nothing is connected", which only matters when the graph
  * actually carries refs - both real callers (status.ts, local.ts) always pass a real
@@ -125,11 +125,11 @@ export function localValueRollup(db, isConnected = () => false) {
         decisions: db.getStats().decisions,
         // Kept counting the real relations even though nothing offline writes one, so the
         // counter stays provably capable of reporting a conflict. That is what makes a zero
-        // here mean "none found" rather than "the counter is broken" (ALI-503 positive control).
+        // here mean "none found" rather than "the counter is broken".
         conflictsCaught: count('conflicts_with') + count('contradicts'),
         similarDecisions: count('relates'),
         duplicates: count('duplicates'),
-        // ALI-1065: partially_supersedes is a real capture-time typed edge now too - counting
+        // partially_supersedes is a real capture-time typed edge now too - counting
         // only 'supersedes' would undercount the moment a decision partially replaces another.
         supersessions: count('supersedes') + count('partially_supersedes'),
         reuseRate: null,

package/dist/lib/value-rollup.js.map

@@ -1 +1 @@
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package/dist/lib/write-confirm.d.ts

@@ -0,0 +1,53 @@
+import { type EditorTarget } from './mcp-setup.js';
+/** One file setup will create or modify. `display` is what the person reads. */
+export interface PlannedWrite {
+    /** Absolute path. */
+    file: string;
+    display: string;
+    action: 'create' | 'modify';
+}
+/**
+ * A path under home as `~/...` with forward slashes on every OS, so the list reads the same as the
+ * project rows. Windows' native separator made it `~\.codex\config.toml` beside `.claude/settings.json`.
+ */
+export declare function homeDisplay(file: string, home: string): string;
+/**
+ * Every file one setup run can create or modify: the project's agent files, then each detected
+ * agent's own config. Built from the tables the writers themselves run (planAgentAlignment,
+ * mcpConfigFiles), never from a second hand-written list.
+ */
+export declare function planSetupWrites(opts: {
+    cwd: string;
+    editors: EditorTarget[];
+    home?: string;
+}): PlannedWrite[];
+/**
+ * "may": the list is every file a writer CAN touch. A writer leaves its file as found when it is a
+ * symlink or the entry in it belongs to a team, and that is decided inside the writer while it runs
+ * (agent-rules.ts, mcp-setup.ts), so it cannot be asked ahead of time without a second copy of the rule.
+ */
+export declare const WRITE_PLAN_HEADING = "Align may create or change these files:";
+/** The list, one file per line. Plain text so the same lines print on a terminal and in a log. */
+export declare function renderWritePlan(files: PlannedWrite[]): string;
+/**
+ * Shown with the list, before the question. `align use --undo` replays the write manifest, which
+ * records the project files AND each agent's own config (write-confirm.test.ts pins both), so one
+ * command covers every file listed. `align mcp --remove` also works, but only for the agent configs.
+ */
+export declare const WRITE_UNDO_LINE = "The first copy of any file that already exists is kept. Undo any time: align use --undo (it covers every file listed, project and agent config alike)";
+export declare const WRITE_CONFIRM_QUESTION = "Continue?";
+/**
+ * Show the list, then ask. The list prints on EVERY run, so a scripted run leaves a record of
+ * what it touched. The question is asked only with a person at a terminal and without
+ * --approve; otherwise the run goes ahead, as it did before the prompt existed.
+ * Returns false only when the person says no (or cancels).
+ */
+export declare function confirmWrites(opts: {
+    files: PlannedWrite[];
+    approve?: boolean;
+    interactive: boolean;
+    print: (text: string) => void;
+    /** The yes/no prompt. Default yes. Resolves to undefined when the person cancels. */
+    ask: (message: string) => Promise<boolean | undefined>;
+}): Promise<boolean>;
+//# sourceMappingURL=write-confirm.d.ts.map

package/dist/lib/write-confirm.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"write-confirm.d.ts","sourceRoot":"","sources":["../../src/lib/write-confirm.ts"],"names":[],"mappings":"AAIA,OAAO,EAAE,KAAK,YAAY,EAAkB,MAAM,gBAAgB,CAAC;AAEnE,gFAAgF;AAChF,MAAM,WAAW,YAAY;IAC3B,qBAAqB;IACrB,IAAI,EAAE,MAAM,CAAC;IACb,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,QAAQ,GAAG,QAAQ,CAAC;CAC7B;AAED;;;GAGG;AACH,wBAAgB,WAAW,CAAC,IAAI,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,MAAM,CAG9D;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,IAAI,EAAE;IAAE,GAAG,EAAE,MAAM,CAAC;IAAC,OAAO,EAAE,YAAY,EAAE,CAAC;IAAC,IAAI,CAAC,EAAE,MAAM,CAAA;CAAE,GAAG,YAAY,EAAE,CAgB7G;AAED;;;;GAIG;AACH,eAAO,MAAM,kBAAkB,4CAA4C,CAAC;AAE5E,kGAAkG;AAClG,wBAAgB,eAAe,CAAC,KAAK,EAAE,YAAY,EAAE,GAAG,MAAM,CAG7D;AAED;;;;GAIG;AACH,eAAO,MAAM,eAAe,0JAA0J,CAAC;AAEvL,eAAO,MAAM,sBAAsB,cAAc,CAAC;AAElD;;;;;GAKG;AACH,wBAAsB,aAAa,CAAC,IAAI,EAAE;IACxC,KAAK,EAAE,YAAY,EAAE,CAAC;IACtB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,WAAW,EAAE,OAAO,CAAC;IACrB,KAAK,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;IAC9B,qFAAqF;IACrF,GAAG,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,OAAO,CAAC,OAAO,GAAG,SAAS,CAAC,CAAC;CACxD,GAAG,OAAO,CAAC,OAAO,CAAC,CAKnB"}

package/dist/lib/write-confirm.js

@@ -0,0 +1,70 @@
+import { existsSync } from 'node:fs';
+import os from 'node:os';
+import path from 'node:path';
+import { planAgentAlignment } from './agent-rules.js';
+import { mcpConfigFiles } from './mcp-setup.js';
+/**
+ * A path under home as `~/...` with forward slashes on every OS, so the list reads the same as the
+ * project rows. Windows' native separator made it `~\.codex\config.toml` beside `.claude/settings.json`.
+ */
+export function homeDisplay(file, home) {
+    const under = file.startsWith(`${home}/`) || file.startsWith(`${home}\\`);
+    return under ? `~${file.slice(home.length).replace(/\\/g, '/')}` : file;
+}
+/**
+ * Every file one setup run can create or modify: the project's agent files, then each detected
+ * agent's own config. Built from the tables the writers themselves run (planAgentAlignment,
+ * mcpConfigFiles), never from a second hand-written list.
+ */
+export function planSetupWrites(opts) {
+    const home = opts.home ?? os.homedir();
+    const out = [];
+    const seen = new Set();
+    const add = (abs, display, action) => {
+        if (seen.has(abs))
+            return;
+        seen.add(abs);
+        out.push({ file: abs, display, action });
+    };
+    for (const { file, action } of planAgentAlignment(opts.cwd))
+        add(path.join(opts.cwd, file), file, action);
+    for (const editor of opts.editors) {
+        for (const file of mcpConfigFiles(editor)) {
+            add(file, homeDisplay(file, home), existsSync(file) ? 'modify' : 'create');
+        }
+    }
+    return out;
+}
+/**
+ * "may": the list is every file a writer CAN touch. A writer leaves its file as found when it is a
+ * symlink or the entry in it belongs to a team, and that is decided inside the writer while it runs
+ * (agent-rules.ts, mcp-setup.ts), so it cannot be asked ahead of time without a second copy of the rule.
+ */
+export const WRITE_PLAN_HEADING = 'Align may create or change these files:';
+/** The list, one file per line. Plain text so the same lines print on a terminal and in a log. */
+export function renderWritePlan(files) {
+    const width = Math.max(...files.map((f) => f.action.length));
+    return [WRITE_PLAN_HEADING, ...files.map((f) => `  ${f.action.padEnd(width)}  ${f.display}`)].join('\n');
+}
+/**
+ * Shown with the list, before the question. `align use --undo` replays the write manifest, which
+ * records the project files AND each agent's own config (write-confirm.test.ts pins both), so one
+ * command covers every file listed. `align mcp --remove` also works, but only for the agent configs.
+ */
+export const WRITE_UNDO_LINE = 'The first copy of any file that already exists is kept. Undo any time: align use --undo (it covers every file listed, project and agent config alike)';
+export const WRITE_CONFIRM_QUESTION = 'Continue?';
+/**
+ * Show the list, then ask. The list prints on EVERY run, so a scripted run leaves a record of
+ * what it touched. The question is asked only with a person at a terminal and without
+ * --approve; otherwise the run goes ahead, as it did before the prompt existed.
+ * Returns false only when the person says no (or cancels).
+ */
+export async function confirmWrites(opts) {
+    if (opts.files.length === 0)
+        return true;
+    opts.print(`${renderWritePlan(opts.files)}\n${WRITE_UNDO_LINE}`);
+    if (!opts.interactive || opts.approve)
+        return true;
+    return (await opts.ask(WRITE_CONFIRM_QUESTION)) === true;
+}
+//# sourceMappingURL=write-confirm.js.map

package/dist/lib/write-confirm.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@aligndottech/cli",
-  "version": "0.63.0",
+  "version": "0.64.1",
   "mcpName": "io.github.aligndottech/cli",
   "type": "module",
   "description": "Align CLI - capture decisions, check alignment, and manage connectors",
@@ -70,13 +70,13 @@
     "vitest": "^3.2.4"
   },
   "overrides": {
-    "hono": "4.13.7",
+    "hono": "4.13.13",
     "@hono/node-server": "1.19.17",
-    "undici": "6.28.1",
-    "fast-uri": "3.1.7",
-    "ip-address": "10.7.0",
-    "qs": "6.16.0",
-    "body-parser": "2.3.0",
+    "undici": "6.29.1",
+    "fast-uri": "3.1.9",
+    "ip-address": "10.7.4",
+    "qs": "6.16.1",
+    "body-parser": "2.4.0",
     "onnxruntime-node": "1.30.0"
   },
   "engines": {