@aligndottech/cli 0.59.0 → 0.61.0

package/dist/lib/found-summary.js

@@ -50,7 +50,7 @@ export function buildFoundSummary(db) {
     });
     return { total, linked: touched.size, recent };
 }
-export function renderFoundSummary(s) {
+export function renderFoundSummary(s, opts = {}) {
     if (s.total === 0) {
         // A row of zeros reads as a broken tool, which is the ALI-503 lesson applied to
         // the first run. Say what is true and let the caller suggest a next source.
@@ -66,6 +66,9 @@ export function renderFoundSummary(s) {
     // "candidate": the importer keeps commits whose message states a reason. That is a text
     // heuristic, so the box does not claim to know which of them were real decisions.
     const lines = [counts];
+    // What kind of source the count came from, said only when there is one to say (ALI-1782).
+    if (opts.prDescriptions !== undefined && opts.prDescriptions > 0)
+        lines.push(`  including ${opts.prDescriptions} from PR descriptions`);
     if (s.recent.length > 0) {
         lines.push('');
         for (const d of s.recent) {

package/dist/lib/found-summary.js.map

@@ -1 +1 @@
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package/dist/lib/gateway-client.d.ts.map

@@ -1 +1 @@
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package/dist/lib/gateway-client.js

@@ -1,6 +1,8 @@
 import { defaultGatewayUrlFor, hasCredential, LOCAL_DEFAULT_GATEWAY_URL } from './config.js';
 import { createLocalGatewayClient } from './local-gateway-client.js';
 import pkg from '../../package.json' with { type: 'json' };
+/** Page size for GET /import/suggestions: the gateway's cap (it returns 50 when none is sent). */
+const SUGGESTION_PAGE_SIZE = 100;
 /**
  * ALI-403: identify the CLI to the gateway on every call.
  *
@@ -533,13 +535,20 @@ function buildHttpGatewayClient(env) {
             const data = await request('/import/scan-runs');
             return data.scan_runs;
         },
-        // GET /import/suggestions returns { suggestions, counts } — uses job_id not import_job_id
+        // GET /import/suggestions returns { suggestions, counts } - uses job_id not import_job_id.
+        // ALI-1585: with no limit the gateway returns 50 rows (cap 100), so a single call silently
+        // dropped the rest of a big scan. Page with limit=100&offset=N until a short page.
         async listSuggestions(jobId, status = 'pending') {
-            const params = new URLSearchParams({ status });
-            if (jobId)
-                params.set('job_id', jobId);
-            const data = await request(`/import/suggestions?${params}`);
-            return data.suggestions;
+            const all = [];
+            for (let offset = 0;; offset += SUGGESTION_PAGE_SIZE) {
+                const params = new URLSearchParams({ status, limit: String(SUGGESTION_PAGE_SIZE), offset: String(offset) });
+                if (jobId)
+                    params.set('job_id', jobId);
+                const data = await request(`/import/suggestions?${params}`);
+                all.push(...data.suggestions);
+                if (data.suggestions.length < SUGGESTION_PAGE_SIZE)
+                    return all;
+            }
         },
         async bulkApproveSuggestions(ids) {
             if (ids.length <= 100) {

package/dist/lib/gateway-client.js.map

@@ -1 +1 @@
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package/dist/lib/hybrid-rank.d.ts

@@ -0,0 +1,20 @@
+/**
+ * Reciprocal rank fusion (ALI-1749). Pure and deterministic.
+ *
+ * Two rankers disagree in useful ways: a dense embedding finds a paraphrase, BM25 finds the rare
+ * identifier the paraphrase blurred. Their scores are not comparable (a cosine and a BM25 sum),
+ * but their RANKS are, so each list contributes `weight / (k + rank)` and the sum orders the
+ * union. A row only one list found still scores; a row both found scores from both.
+ *
+ * Ties break on the first list's order, then on the id in code units, so the result never
+ * depends on the machine's locale or on insertion order.
+ */
+/** Smaller than the textbook 60: with the 30-row pool used here, 60 flattens the top ranks so a row
+ *  both lists put near the top barely separates from one only a list put at rank 20. Measured
+ *  (ALI-1749): k=10 beat k=60 on recall@8 and MRR across 9 repos. */
+export declare const RRF_K = 10;
+export declare function reciprocalRankFusion(lists: ReadonlyArray<{
+    ids: readonly string[];
+    weight: number;
+}>, k?: number): string[];
+//# sourceMappingURL=hybrid-rank.d.ts.map

package/dist/lib/hybrid-rank.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/hybrid-rank.js

@@ -0,0 +1,30 @@
+/**
+ * Reciprocal rank fusion (ALI-1749). Pure and deterministic.
+ *
+ * Two rankers disagree in useful ways: a dense embedding finds a paraphrase, BM25 finds the rare
+ * identifier the paraphrase blurred. Their scores are not comparable (a cosine and a BM25 sum),
+ * but their RANKS are, so each list contributes `weight / (k + rank)` and the sum orders the
+ * union. A row only one list found still scores; a row both found scores from both.
+ *
+ * Ties break on the first list's order, then on the id in code units, so the result never
+ * depends on the machine's locale or on insertion order.
+ */
+/** Smaller than the textbook 60: with the 30-row pool used here, 60 flattens the top ranks so a row
+ *  both lists put near the top barely separates from one only a list put at rank 20. Measured
+ *  (ALI-1749): k=10 beat k=60 on recall@8 and MRR across 9 repos. */
+export const RRF_K = 10;
+export function reciprocalRankFusion(lists, k = RRF_K) {
+    const score = new Map();
+    const firstPos = new Map();
+    for (const [li, list] of lists.entries()) {
+        list.ids.forEach((id, i) => {
+            score.set(id, (score.get(id) ?? 0) + list.weight / (k + i + 1));
+            if (li === 0 && !firstPos.has(id))
+                firstPos.set(id, i);
+        });
+    }
+    return [...score.keys()].sort((a, b) => score.get(b) - score.get(a)
+        || (firstPos.get(a) ?? Infinity) - (firstPos.get(b) ?? Infinity)
+        || (a < b ? -1 : a > b ? 1 : 0));
+}
+//# sourceMappingURL=hybrid-rank.js.map

package/dist/lib/hybrid-rank.js.map

@@ -0,0 +1 @@
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package/dist/lib/lexical-store.d.ts

@@ -0,0 +1,29 @@
+import type { DatabaseSync } from 'node:sqlite';
+/**
+ * The persisted lexical index of a local graph (ALI-1749).
+ *
+ * Why persisted: building an in-memory index per process cost +53 ms on a 1,415-row graph and +298 ms on a
+ * 2,000-row one, on every `align ask` and every advisory hook. Here each git decision's term counts live in
+ * the graph's own SQLite file, built lazily on the first search and refreshed only for rows that changed, so a
+ * later process reads a few postings lists and tokenises nothing.
+ *
+ * Only git decisions are indexed. Every other platform keeps exactly the ranking it had before, because it
+ * has no lexical list to fuse (hybrid-rank.ts), and the tables stay empty for a graph with no commits.
+ *
+ * Tables are created lazily here, not in the schema migrations: an older CLI opening the same file ignores
+ * them, and a graph that never searches never grows them.
+ *
+ * LEXICAL_RECIPE is the version of how a row becomes terms (tokeniser, stemmer, title weight, body length).
+ * A row stored under another recipe is stale and is rebuilt on the next search. Dense vectors are NOT part
+ * of it and are never touched.
+ */
+export declare const LEXICAL_RECIPE = 1;
+export interface LexicalStore {
+    /** Ranked ids for weighted query terms (term -> weight), best first. Ties break on id in code units. */
+    search(terms: ReadonlyMap<string, number>, limit: number): Array<{
+        id: string;
+        score: number;
+    }>;
+}
+export declare function createLexicalStore(db: DatabaseSync): LexicalStore;
+//# sourceMappingURL=lexical-store.d.ts.map

package/dist/lib/lexical-store.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"lexical-store.d.ts","sourceRoot":"","sources":["../../src/lib/lexical-store.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,aAAa,CAAC;AAIhD;;;;;;;;;;;;;;;;;GAiBG;AACH,eAAO,MAAM,cAAc,IAAI,CAAC;AAmBhC,MAAM,WAAW,YAAY;IAC3B,wGAAwG;IACxG,MAAM,CAAC,KAAK,EAAE,WAAW,CAAC,MAAM,EAAE,MAAM,CAAC,EAAE,KAAK,EAAE,MAAM,GAAG,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC,CAAC;CACjG;AAED,wBAAgB,kBAAkB,CAAC,EAAE,EAAE,YAAY,GAAG,YAAY,CAmGjE"}

package/dist/lib/lexical-store.js

@@ -0,0 +1,143 @@
+import { createHash } from 'node:crypto';
+import { indexBodyFor } from './lexical-text.js';
+import { termCounts } from './lexical-terms.js';
+/**
+ * The persisted lexical index of a local graph (ALI-1749).
+ *
+ * Why persisted: building an in-memory index per process cost +53 ms on a 1,415-row graph and +298 ms on a
+ * 2,000-row one, on every `align ask` and every advisory hook. Here each git decision's term counts live in
+ * the graph's own SQLite file, built lazily on the first search and refreshed only for rows that changed, so a
+ * later process reads a few postings lists and tokenises nothing.
+ *
+ * Only git decisions are indexed. Every other platform keeps exactly the ranking it had before, because it
+ * has no lexical list to fuse (hybrid-rank.ts), and the tables stay empty for a graph with no commits.
+ *
+ * Tables are created lazily here, not in the schema migrations: an older CLI opening the same file ignores
+ * them, and a graph that never searches never grows them.
+ *
+ * LEXICAL_RECIPE is the version of how a row becomes terms (tokeniser, stemmer, title weight, body length).
+ * A row stored under another recipe is stale and is rebuilt on the next search. Dense vectors are NOT part
+ * of it and are never touched.
+ */
+export const LEXICAL_RECIPE = 1;
+const K1 = 1.2;
+const B = 0.75;
+// Terms are keyed by a small integer, not the decision's UUID: a UUID in the b-tree made the index larger
+// than the graph's own text for a 2,000-commit repo, and an integer is a quarter of the size.
+const DDL = `
+CREATE TABLE IF NOT EXISTS lex_doc (num INTEGER PRIMARY KEY, decision_id TEXT NOT NULL UNIQUE, sig TEXT NOT NULL, len REAL NOT NULL);
+CREATE TABLE IF NOT EXISTS lex_term (term TEXT NOT NULL, num INTEGER NOT NULL, tf INTEGER NOT NULL, PRIMARY KEY (term, num)) WITHOUT ROWID;
+`;
+function signature(title, summary) {
+    const h = createHash('sha1').update(title).update('\0').update(summary).digest('base64').slice(0, 16);
+    return `${LEXICAL_RECIPE}:${h}`;
+}
+export function createLexicalStore(db) {
+    let state;
+    const stamp = () => {
+        const version = db.prepare('PRAGMA data_version').get().data_version;
+        const changes = db.prepare('SELECT total_changes() AS n').get().n;
+        return `${version}:${changes}`;
+    };
+    /** What differs between the git rows and the stored index. Read-only. */
+    function plan() {
+        const rows = db.prepare(`SELECT id, title, summary FROM decisions WHERE platform = 'git'`).all();
+        const stored = new Map(db.prepare('SELECT num, decision_id, sig, len FROM lex_doc').all()
+            .map(r => [r.decision_id, r]));
+        const live = new Set(rows.map(r => r.id));
+        const gone = [...stored.values()].filter(d => !live.has(d.decision_id));
+        const fresh = rows.map(r => ({ r, sig: signature(r.title, r.summary) })).filter(x => stored.get(x.r.id)?.sig !== x.sig);
+        const docs = new Map();
+        for (const d of stored.values())
+            if (live.has(d.decision_id))
+                docs.set(d.num, { id: d.decision_id, len: d.len });
+        return { gone, fresh, stored, docs };
+    }
+    /** Bring lex_doc and lex_term in line with the git rows. Only rows whose signature moved are tokenised. */
+    function refresh() {
+        // A search must not sit behind an import's write lock for the graph's 30 s (the DDL below needs that lock
+        // too): wait briefly, then the caller falls back to the dense order. Put back to 30 s afterwards.
+        db.exec('PRAGMA busy_timeout = 2000');
+        try {
+            return refreshLocked();
+        }
+        finally {
+            db.exec('PRAGMA busy_timeout = 30000');
+        }
+    }
+    function refreshLocked() {
+        db.exec(DDL);
+        // Stamped BEFORE reading, so a commit that lands while we read makes the next call refresh again
+        // instead of being hidden behind a stamp taken after it.
+        let key = stamp();
+        let p = plan();
+        if (p.gone.length || p.fresh.length) {
+            const upsert = db.prepare(`INSERT INTO lex_doc (decision_id, sig, len) VALUES (?, ?, 0)
+        ON CONFLICT(decision_id) DO UPDATE SET sig = excluded.sig RETURNING num`);
+            const setLen = db.prepare('UPDATE lex_doc SET len = ? WHERE num = ?');
+            const putTerm = db.prepare('INSERT INTO lex_term (term, num, tf) VALUES (?, ?, ?)');
+            db.exec('BEGIN IMMEDIATE');
+            try {
+                // Planned again under the write lock: another process may have refreshed the same rows while we waited.
+                p = plan();
+                const stale = [...p.gone.map(d => d.num), ...p.fresh.flatMap(x => (p.stored.get(x.r.id) ? [p.stored.get(x.r.id).num] : []))];
+                // One scan per 500 numbers: removing by number without an index on it costs a scan, and an index would cost more space.
+                for (let i = 0; i < stale.length; i += 500) {
+                    const chunk = stale.slice(i, i + 500);
+                    db.prepare(`DELETE FROM lex_term WHERE num IN (${chunk.map(() => '?').join(',')})`).run(...chunk);
+                }
+                for (const d of p.gone)
+                    db.prepare('DELETE FROM lex_doc WHERE num = ?').run(d.num);
+                for (const { r, sig } of p.fresh) {
+                    const { num } = upsert.get(r.id, sig);
+                    const counts = termCounts(r.title, indexBodyFor(r.title, r.summary));
+                    let len = 0;
+                    for (const [term, tf] of counts) {
+                        putTerm.run(term, num, tf);
+                        len += tf;
+                    }
+                    setLen.run(len, num);
+                    p.docs.set(num, { id: r.id, len });
+                }
+                // Inside the write lock no other process can commit, so this stamp covers exactly what we read and wrote.
+                key = stamp();
+                db.exec('COMMIT');
+            }
+            catch (err) {
+                db.exec('ROLLBACK');
+                throw err;
+            }
+        }
+        let total = 0;
+        for (const d of p.docs.values())
+            total += d.len;
+        return { key, n: p.docs.size, avgLen: p.docs.size ? total / p.docs.size : 0, docs: p.docs };
+    }
+    return {
+        search(terms, limit) {
+            if (!state || state.key !== stamp())
+                state = refresh();
+            const { n, avgLen, docs } = state;
+            if (!n)
+                return [];
+            const postings = db.prepare('SELECT num, tf FROM lex_term WHERE term = ?');
+            const scores = new Map();
+            for (const [term, weight] of terms) {
+                const rows = postings.all(term);
+                if (!rows.length)
+                    continue;
+                const idf = Math.log(1 + (n - rows.length + 0.5) / (rows.length + 0.5));
+                for (const { num, tf } of rows) {
+                    const doc = docs.get(num);
+                    if (!doc)
+                        continue;
+                    scores.set(doc.id, (scores.get(doc.id) ?? 0) + weight * idf * ((tf * (K1 + 1)) / (tf + K1 * (1 - B + B * (doc.len / avgLen)))));
+                }
+            }
+            return [...scores].map(([id, score]) => ({ id, score }))
+                .sort((a, b) => b.score - a.score || (a.id < b.id ? -1 : a.id > b.id ? 1 : 0))
+                .slice(0, limit);
+        },
+    };
+}
+//# sourceMappingURL=lexical-store.js.map

package/dist/lib/lexical-store.js.map

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package/dist/lib/lexical-terms.d.ts

@@ -0,0 +1,28 @@
+/**
+ * Terms for the lexical half of local search (ALI-1749). Pure, no I/O.
+ *
+ * Why a lexical ranking exists: a dense embedding of a whole commit message blurs a rare identifier
+ * ("find-my-way", "pino", "node18") into the surrounding prose, so the one commit that names it can sit
+ * far down the dense order. A lexical score does the opposite: a rare term that appears in a document is
+ * worth a lot, and a common one is worth nothing.
+ *
+ * Tokens are identifier-aware: `find-my-way` yields `find-my-way`, `find`, `my`, `way`; `getUserName`
+ * yields `getusername`, `get`, `user`, `name`; `lib/route.js` yields `lib/route.js`, `lib`, `route`, `js`;
+ * `node18` yields `node18`, `node`, `18`. The whole identifier stays a token so a query that quotes it
+ * matches exactly, and the parts let a plain question ("why do we use find my way") still find it.
+ */
+/** A term in the title counts this many times in the document, so a title hit outweighs a body hit. */
+export declare const TITLE_TERM_WEIGHT = 3;
+/**
+ * One deterministic light stemmer, used for the index AND the query, so the two cannot disagree: plural,
+ * then -ed/-ing, then a final -e. "process" and "processes" meet, and so do "remove", "removed", "removes"
+ * and "removing". Not a linguistic stemmer: it only has to give both sides the same answer.
+ */
+export declare function stem(token: string): string;
+/** The tokens of a text, lowercased and stemmed, with each identifier kept whole AND in parts. */
+export declare function tokenize(text: string): string[];
+/** Term frequencies of one document: a title term counts TITLE_TERM_WEIGHT times, a body term once. */
+export declare function termCounts(title: string, body: string): Map<string, number>;
+/** Query terms with weight 1 each (a repeated word counts once). */
+export declare function queryTerms(query: string): Map<string, number>;
+//# sourceMappingURL=lexical-terms.d.ts.map

package/dist/lib/lexical-terms.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/lexical-terms.js

@@ -0,0 +1,89 @@
+import { SCAFFOLDING } from './search-query.js';
+/**
+ * Terms for the lexical half of local search (ALI-1749). Pure, no I/O.
+ *
+ * Why a lexical ranking exists: a dense embedding of a whole commit message blurs a rare identifier
+ * ("find-my-way", "pino", "node18") into the surrounding prose, so the one commit that names it can sit
+ * far down the dense order. A lexical score does the opposite: a rare term that appears in a document is
+ * worth a lot, and a common one is worth nothing.
+ *
+ * Tokens are identifier-aware: `find-my-way` yields `find-my-way`, `find`, `my`, `way`; `getUserName`
+ * yields `getusername`, `get`, `user`, `name`; `lib/route.js` yields `lib/route.js`, `lib`, `route`, `js`;
+ * `node18` yields `node18`, `node`, `18`. The whole identifier stays a token so a query that quotes it
+ * matches exactly, and the parts let a plain question ("why do we use find my way") still find it.
+ */
+/** A term in the title counts this many times in the document, so a title hit outweighs a body hit. */
+export const TITLE_TERM_WEIGHT = 3;
+const STOP = new Set([...SCAFFOLDING, 'we', 'with', 'from', 'by', 'as', 'not', 'no', 'but', 'if', 'so', 'than', 'then', 'into', 'out', 'up', 'all', 'any', 'has', 'have', 'had', 'will', 'also', 'use', 'used', 'using']);
+/**
+ * One deterministic light stemmer, used for the index AND the query, so the two cannot disagree: plural,
+ * then -ed/-ing, then a final -e. "process" and "processes" meet, and so do "remove", "removed", "removes"
+ * and "removing". Not a linguistic stemmer: it only has to give both sides the same answer.
+ */
+export function stem(token) {
+    let t = token.toLowerCase();
+    if (t.length <= 3)
+        return t;
+    if (t.endsWith('ies') && t.length > 4)
+        t = `${t.slice(0, -3)}y`;
+    else if (/(ss|x|z|ch|sh)es$/.test(t))
+        t = t.slice(0, -2);
+    else if (t.endsWith('s') && !/(ss|us|is)$/.test(t))
+        t = t.slice(0, -1);
+    if (t.length > 5 && t.endsWith('ing'))
+        t = t.slice(0, -3);
+    else if (t.length > 4 && t.endsWith('ed'))
+        t = t.slice(0, -2);
+    if (/([^aeiou\d])\1$/.test(t) && !/(ss|ll|zz)$/.test(t))
+        t = t.slice(0, -1);
+    if (t.length > 4 && t.endsWith('e'))
+        t = t.slice(0, -1);
+    return t;
+}
+/** Split an identifier-ish chunk into its parts: camelCase, snake_case, digits against letters. */
+function parts(chunk) {
+    return chunk
+        .replace(/([a-z\d])([A-Z])/g, '$1 $2')
+        .replace(/([A-Z]+)([A-Z][a-z])/g, '$1 $2')
+        .replace(/([a-zA-Z])(\d)/g, '$1 $2')
+        .replace(/(\d)([a-zA-Z])/g, '$1 $2')
+        .split(/[^\p{L}\p{N}]+/u)
+        .filter(Boolean);
+}
+/** The tokens of a text, lowercased and stemmed, with each identifier kept whole AND in parts. */
+export function tokenize(text) {
+    const out = [];
+    for (const raw of text.split(/\s+/)) {
+        const chunk = raw.replace(/^[^\p{L}\p{N}@]+/u, '').replace(/[^\p{L}\p{N}]+$/u, '');
+        if (!chunk)
+            continue;
+        const whole = chunk.toLowerCase();
+        const pieces = parts(chunk).map(p => p.toLowerCase());
+        // The whole token is kept only when it is a compound (it has a separator or a case/digit
+        // boundary); a plain word would otherwise count twice, once whole and once as its own part.
+        const compound = pieces.length > 1 || /[^\p{L}\p{N}]/u.test(chunk);
+        if (compound)
+            out.push(whole);
+        for (const piece of pieces)
+            if (!STOP.has(piece) && piece.length > 1)
+                out.push(stem(piece));
+    }
+    return out;
+}
+/** Term frequencies of one document: a title term counts TITLE_TERM_WEIGHT times, a body term once. */
+export function termCounts(title, body) {
+    const counts = new Map();
+    for (const t of tokenize(title))
+        counts.set(t, (counts.get(t) ?? 0) + TITLE_TERM_WEIGHT);
+    for (const t of tokenize(body))
+        counts.set(t, (counts.get(t) ?? 0) + 1);
+    return counts;
+}
+/** Query terms with weight 1 each (a repeated word counts once). */
+export function queryTerms(query) {
+    const out = new Map();
+    for (const t of tokenize(query))
+        out.set(t, 1);
+    return out;
+}
+//# sourceMappingURL=lexical-terms.js.map

package/dist/lib/lexical-terms.js.map

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package/dist/lib/lexical-text.d.ts

@@ -0,0 +1,19 @@
+/**
+ * What text of a git decision the lexical index reads (ALI-1749).
+ *
+ * A git decision's stored summary is `formatCommitAsText`: subject, body, then `Author:`, `Date:`,
+ * `Files changed:` and `URL:` blocks. The reason a commit exists lives in the first lines of the body, so
+ * the index reads the start of that body, with trailers and metadata dropped. The stored summary and the
+ * embedding text are never changed, only what the lexical index derives from them.
+ *
+ * Pure.
+ */
+/** How much of the cleaned body the index reads. Measured on eval v2 (ALI-1749): 500, 1000 and 2000 chars
+ *  scored the same (recall@8 95.7%) and none at all scored 79.9%, so the body matters and its length does
+ *  not; 500 keeps the persisted index small. */
+export declare const INDEX_BODY_CHARS = 500;
+/** The prose of a git decision's body: no subject echo, no trailers, no Author/Date/Files/URL block. */
+export declare function commitBodyOf(title: string, summary: string): string;
+/** The body the lexical index reads for a git decision. */
+export declare function indexBodyFor(title: string, summary: string): string;
+//# sourceMappingURL=lexical-text.d.ts.map

package/dist/lib/lexical-text.d.ts.map

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