@aligndottech/cli 0.56.0 → 0.57.1

package/dist/lib/usage-telemetry.js

@@ -1,5 +1,5 @@
 import { ALIGN_HOSTED_GATEWAY_URL } from './config.js';
-import { telemetryDisabledByEnv } from './telemetry-env.js';
+import { DOCTOR_ENV, telemetryDisabledByEnv } from './telemetry-env.js';
 import { inHookContext, markHookContext } from './hook-context.js';
 import { inCi } from './telemetry-ci.js';
 import { maybeShowTelemetryNotice, storeEnvOptOut } from './telemetry-consent.js';
@@ -24,8 +24,16 @@ import pkg from '../../package.json' with { type: 'json' };
  * consent included (ALI-618 D3b - one consent model, not two). `align telemetry off` stores 'off', which does the same thing without an env var.
  */
 export const TELEMETRY_TIMEOUT_MS = 2_000;
+/**
+ * ALI-1740: `align doctor` sends nothing, and neither does the `align mcp` it starts. A process
+ * marked with DOCTOR_ENV (telemetry-env.ts) is opted out here, in the one gate every send path
+ * already passes through. The marker is not DO_NOT_TRACK, because an env opt-out is STORED as a
+ * permanent opt-out (telemetry-consent.ts storeEnvOptOut) and a preflight must not change a choice.
+ */
+/** Commands that never send telemetry and never show the notice or consume the install beacon. */
+const TELEMETRY_FREE_COMMANDS = new Set(['doctor']);
 function telemetryOptedOut() {
-    return telemetryDisabledByEnv() !== undefined || inCi();
+    return telemetryDisabledByEnv() !== undefined || inCi() || process.env[DOCTOR_ENV] === '1';
 }
 /**
  * THE one predicate for "a stored answer forbids sending anything", read by every send path:
@@ -649,6 +657,12 @@ export async function recordInvocationUsage(envFlag, command, opts = {}) {
  * `--advisory`), marked here because the command's action, which also marks it, runs later.
  */
 export async function beginInvocationTelemetry(commandPath, opts) {
+    // Before the notice (showing it marks it shown, which switches later sends on) and before the beacon (which consumes the first run).
+    // The marker is what silences the rest of the run (the postAction usage ping, every funnel stage) and is inherited by children.
+    if (TELEMETRY_FREE_COMMANDS.has(commandPath)) {
+        process.env[DOCTOR_ENV] = '1';
+        return false;
+    }
     if (opts.hook)
         markHookContext();
     try {

package/dist/lib/usage-telemetry.js.map

@@ -1 +1 @@
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package/dist/lib/user-hooks.d.ts

@@ -6,11 +6,15 @@ export interface UserHookTarget {
     path: string;
 }
 export declare function advisoryHookCommand(host: HookHost, env?: string): string;
-export declare function writeUserHooks(target: UserHookTarget, env?: string, onForeign?: OnForeign): boolean;
+export declare function writeUserHooks(target: UserHookTarget, env?: string, onForeign?: OnForeign, 
+/** Called once per file where a user-edited align element was kept instead of refreshed. */
+onEdited?: (file: string) => void): boolean;
 /**
  * Take our entries back out. Returns whether there was anything of ours to remove.
  * Deletes the file only when nothing but what we wrote (plus the version we added) is left,
  * so a file the user pre-populated survives with their hooks in it.
  */
 export declare function removeUserHooks(target: UserHookTarget): boolean;
+/** The line shown when a user-edited align hook element was kept (ALI-1476). */
+export declare function editedHookNotice(file: string): string;
 //# sourceMappingURL=user-hooks.d.ts.map

package/dist/lib/user-hooks.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"user-hooks.d.ts","sourceRoot":"","sources":["../../src/lib/user-hooks.ts"],"names":[],"mappings":"AAEA,OAAO,EAAmB,KAAK,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAiBnE,MAAM,MAAM,QAAQ,GAAG,OAAO,GAAG,QAAQ,GAAG,SAAS,CAAC;AAEtD,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,QAAQ,CAAC;IACf,6DAA6D;IAC7D,IAAI,EAAE,MAAM,CAAC;CACd;AAMD,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAIxE;AAoGD,wBAAgB,cAAc,CAAC,MAAM,EAAE,cAAc,EAAE,GAAG,CAAC,EAAE,MAAM,EAAE,SAAS,CAAC,EAAE,SAAS,GAAG,OAAO,CA4CnG;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,cAAc,GAAG,OAAO,CAwB/D"}
+{"version":3,"file":"user-hooks.d.ts","sourceRoot":"","sources":["../../src/lib/user-hooks.ts"],"names":[],"mappings":"AAGA,OAAO,EAAmB,KAAK,SAAS,EAAE,MAAM,kBAAkB,CAAC;AAiBnE,MAAM,MAAM,QAAQ,GAAG,OAAO,GAAG,QAAQ,GAAG,SAAS,CAAC;AAEtD,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,QAAQ,CAAC;IACf,6DAA6D;IAC7D,IAAI,EAAE,MAAM,CAAC;CACd;AAMD,wBAAgB,mBAAmB,CAAC,IAAI,EAAE,QAAQ,EAAE,GAAG,CAAC,EAAE,MAAM,GAAG,MAAM,CAIxE;AA+GD,wBAAgB,cAAc,CAC5B,MAAM,EAAE,cAAc,EACtB,GAAG,CAAC,EAAE,MAAM,EACZ,SAAS,CAAC,EAAE,SAAS;AACrB,4FAA4F;AAC5F,QAAQ,CAAC,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,GAChC,OAAO,CAqDT;AAED;;;;GAIG;AACH,wBAAgB,eAAe,CAAC,MAAM,EAAE,cAAc,GAAG,OAAO,CAwB/D;AAED,gFAAgF;AAChF,wBAAgB,gBAAgB,CAAC,IAAI,EAAE,MAAM,GAAG,MAAM,CAErD"}

package/dist/lib/user-hooks.js

@@ -1,5 +1,6 @@
 import { existsSync, mkdirSync, readFileSync, unlinkSync, writeFileSync } from 'node:fs';
 import path from 'node:path';
+import { isDeepStrictEqual } from 'node:util';
 import { carriesLocalEnv } from './foreign-env.js';
 import { safeWriteJson } from './safe-config-write.js';
 // The hook budget on every host is <=10s (check.ts); the same number Claude Code's hook uses.
@@ -56,6 +57,16 @@ const HOSTS = {
 function isOurs(spec, entry) {
     return spec.commandsOf(entry).some((c) => c.includes(OURS));
 }
+// ALI-1476: an element of ours is ours to refresh only while it is exactly what align writes
+// for the command it carries. Anything else (a nested command added, a timeout changed) is the
+// user's edit, and replacing it would discard that edit without a word.
+function isPristine(host, spec, entry) {
+    const command = spec.commandsOf(entry).find((c) => c.includes(OURS));
+    // The command itself must be one align writes: an appended flag or a wrapper is an edit too.
+    return command !== undefined
+        && new RegExp(`^${OURS} --format ${host}( --env \\S+)?$`).test(command)
+        && isDeepStrictEqual(entry, spec.entry(command));
+}
 // Throws on a file we cannot parse rather than rewriting it - the same rule every JSON
 // writer in mcp-setup.ts follows, for the same reason: a rewrite destroys whatever the user
 // was part-way through editing.
@@ -97,10 +108,13 @@ function hooksOf(config, file) {
  * its own hooks/ dir, so it stays on the plain writer.
  */
 const SAFE_HOSTS = new Set(['codex', 'cursor']);
-export function writeUserHooks(target, env, onForeign) {
+export function writeUserHooks(target, env, onForeign, 
+/** Called once per file where a user-edited align element was kept instead of refreshed. */
+onEdited) {
     const spec = HOSTS[target.host];
     const command = advisoryHookCommand(target.host, env);
     let foreign = false;
+    let edited = false;
     // Mutates and returns `config`; undefined means "leave the file alone".
     const merge = (config) => {
         const hooks = hooksOf(config, target.path);
@@ -109,8 +123,14 @@ export function writeUserHooks(target, env, onForeign) {
             foreign = true;
             return undefined;
         }
+        // All events or none: Cursor and Copilot need both, and a pair on different envs checks two graphs.
+        const eventList = (event) => (Array.isArray(hooks[event]) ? hooks[event] : []);
+        if (spec.events.some((event) => eventList(event).some((e) => isOurs(spec, e) && !isPristine(target.host, spec, e)))) {
+            edited = true;
+            return undefined;
+        }
         for (const event of spec.events) {
-            const existing = (Array.isArray(hooks[event]) ? hooks[event] : []);
+            const existing = eventList(event);
             const preserved = existing.filter((e) => !isOurs(spec, e));
             preserved.push(spec.entry(command));
             hooks[event] = preserved;
@@ -126,6 +146,8 @@ export function writeUserHooks(target, env, onForeign) {
             onForeign(target.path);
             return false;
         }
+        if (edited)
+            onEdited?.(target.path);
         return status !== 'symlink';
     }
     const config = readHooksFile(target.path) ?? {};
@@ -134,6 +156,8 @@ export function writeUserHooks(target, env, onForeign) {
         onForeign(target.path);
         return false;
     }
+    if (edited)
+        onEdited?.(target.path);
     const dir = path.dirname(target.path);
     if (!existsSync(dir))
         mkdirSync(dir, { recursive: true });
@@ -173,4 +197,8 @@ export function removeUserHooks(target) {
     writeFileSync(target.path, `${JSON.stringify(config, null, 2)}\n`, 'utf8');
     return true;
 }
+/** The line shown when a user-edited align hook element was kept (ALI-1476). */
+export function editedHookNotice(file) {
+    return `Kept your edits to the align hook in ${file}, so it still runs its old command and env. To refresh it, delete that hook entry and run align mcp --setup again.`;
+}
 //# sourceMappingURL=user-hooks.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@aligndottech/cli",
-  "version": "0.56.0",
+  "version": "0.57.1",
   "mcpName": "io.github.aligndottech/cli",
   "type": "module",
   "description": "Align CLI - capture decisions, check alignment, and manage connectors",
@@ -21,7 +21,7 @@
     "url": "https://github.com/aligndottech/align-cli/issues"
   },
   "bin": {
-    "align": "./dist/index.js"
+    "align": "./dist/bin.js"
   },
   "scripts": {
     "build": "tsc -p tsconfig.json",