@alextis59/athena 1.0.0 → 1.2.0

package/README.md

@@ -51,7 +51,9 @@ Common options:
 --db <path>        SQLite index path
 --host <host>      Server bind host
 --port <port>      Server port
---debug            Enable debug logs
+--agent-provider <opencode|codex>
+                   External agent provider for MCP
+--debug            Enable debug logs and write index traces to /tmp/athena-traces
 --json             Emit machine-readable output where supported
 ```
 
@@ -93,6 +95,9 @@ export default defineConfig({
     provider: "none",
     model: null,
     allowRemoteDocumentText: false
+  },
+  agent: {
+    provider: "opencode"
   }
 });
 ```
@@ -128,8 +133,10 @@ available. Low-confidence PDF regions are surfaced as uncertain in the UI.
 - `listDocs`
 - `relatedChunks`
 
-See [docs/mcp-integration.md](docs/mcp-integration.md) for OpenCode and generic
-MCP setup examples.
+See [docs/mcp-integration.md](docs/mcp-integration.md) for OpenCode, Codex, and
+generic MCP setup examples. OpenCode is the default external-agent provider;
+pass `athena mcp --agent-provider codex` or set `agent.provider: "codex"` when
+configuring Athena for Codex.
 
 ## Development
 

package/dist/cli/help.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"help.d.ts","sourceRoot":"","sources":["../../src/cli/help.ts"],"names":[],"mappings":"AAAA,wBAAgB,UAAU,IAAI,MAAM,CA0BnC"}
+{"version":3,"file":"help.d.ts","sourceRoot":"","sources":["../../src/cli/help.ts"],"names":[],"mappings":"AAAA,wBAAgB,UAAU,IAAI,MAAM,CA4BnC"}

package/dist/cli/help.js

@@ -19,7 +19,9 @@ Options:
   --db <path>        SQLite index path (default: .athena/index.sqlite)
   --host <host>      Server bind host (default: 127.0.0.1)
   --port <port>      Server port (default: 4317)
-  --debug            Enable debug logs
+  --agent-provider <opencode|codex>
+                     External agent provider for MCP (default: opencode)
+  --debug            Enable debug logs and write index traces to /tmp/athena-traces
   --json             Emit machine-readable output where supported
   --build            Build the index before serving
   -h, --help         Show help

package/dist/cli/help.js.map

@@ -1 +1 @@
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+{"version":3,"file":"help.js","sourceRoot":"","sources":["../../src/cli/help.ts"],"names":[],"mappings":"AAAA,MAAM,UAAU,UAAU;IACxB,OAAO;;;;;;;;;;;;;;;;;;;;;;;;;;CA0BR,CAAC;AACF,CAAC"}

package/dist/cli/options.d.ts

@@ -1,3 +1,4 @@
+import type { AgentProvider } from "../config/index.js";
 export type CliCommand = "default" | "index" | "serve" | "ask" | "doctor" | "mcp";
 export interface CliOptions {
     root: string;
@@ -11,6 +12,7 @@ export interface CliOptions {
     json: boolean;
     help: boolean;
     build: boolean;
+    agentProvider?: AgentProvider;
 }
 export interface ParsedCli {
     command: CliCommand;

package/dist/cli/options.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"options.d.ts","sourceRoot":"","sources":["../../src/cli/options.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,aAAa,EAAE,MAAM,oBAAoB,CAAC;AAExD,MAAM,MAAM,UAAU,GACpB,SAAS,GAAG,OAAO,GAAG,OAAO,GAAG,KAAK,GAAG,QAAQ,GAAG,KAAK,CAAC;AAE3D,MAAM,WAAW,UAAU;IACzB,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,EAAE,CAAC,EAAE,MAAM,CAAC;IACZ,IAAI,EAAE,MAAM,CAAC;IACb,IAAI,EAAE,MAAM,CAAC;IACb,YAAY,EAAE,OAAO,CAAC;IACtB,YAAY,EAAE,OAAO,CAAC;IACtB,KAAK,EAAE,OAAO,CAAC;IACf,IAAI,EAAE,OAAO,CAAC;IACd,IAAI,EAAE,OAAO,CAAC;IACd,KAAK,EAAE,OAAO,CAAC;IACf,aAAa,CAAC,EAAE,aAAa,CAAC;CAC/B;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,UAAU,CAAC;IACpB,OAAO,EAAE,UAAU,CAAC;IACpB,IAAI,EAAE,MAAM,EAAE,CAAC;CAChB;AAWD,wBAAgB,YAAY,CAAC,IAAI,EAAE,MAAM,EAAE,EAAE,GAAG,EAAE,MAAM,GAAG,SAAS,CAuEnE"}

package/dist/cli/options.js

@@ -83,6 +83,9 @@ function applyOption(options, name, value) {
             options.port = parsePort(value);
             options.portProvided = true;
             return;
+        case "--agent-provider":
+            options.agentProvider = parseAgentProvider(value);
+            return;
         default:
             throw new UserFacingError(`Unknown option ${name}.`);
     }
@@ -94,4 +97,10 @@ function parsePort(value) {
     }
     return port;
 }
+function parseAgentProvider(value) {
+    if (value === "opencode" || value === "codex") {
+        return value;
+    }
+    throw new UserFacingError(`Invalid agent provider: ${value}. Expected 'opencode' or 'codex'.`);
+}
 //# sourceMappingURL=options.js.map

package/dist/cli/options.js.map

@@ -1 +1 @@
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package/dist/cli/run.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../../src/cli/run.ts"],"names":[],"mappings":"AAKA,OAAO,EAAE,QAAQ,EAAkC,MAAM,cAAc,CAAC;AAexE,OAAO,KAAK,EAAkB,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOvE,MAAM,WAAW,UAAU;IACzB,KAAK,CAAC,EAAE,aAAa,CAAC,MAAM,GAAG,UAAU,CAAC,CAAC;IAC3C,MAAM,EAAE,WAAW,CAAC;IACpB,MAAM,EAAE,WAAW,CAAC;CACrB;AAED,MAAM,WAAW,WAAW;IAC1B,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,UAAU,GAAG,OAAO,CAAC;CAC5C;AAED,MAAM,WAAW,cAAc;IAC7B,GAAG,EAAE,MAAM,CAAC;IACZ,aAAa,CAAC,EAAE,aAAa,CAAC;IAC9B,KAAK,CAAC,EAAE,MAAM,CAAC;IACf,qBAAqB,CAAC,EAAE,OAAO,CAAC;CACjC;AAED,MAAM,WAAW,SAAS;IACxB,QAAQ,EAAE,QAAQ,CAAC;CACpB;AAED,wBAAsB,MAAM,CAC1B,IAAI,EAAE,MAAM,EAAE,EACd,OAAO,EAAE,UAAU,EACnB,WAAW,EAAE,cAAc,GAC1B,OAAO,CAAC,SAAS,CAAC,CAqBpB"}

package/dist/cli/run.js

@@ -1,3 +1,7 @@
+import { randomUUID } from "node:crypto";
+import { appendFile, mkdir, writeFile } from "node:fs/promises";
+import { tmpdir } from "node:os";
+import path from "node:path";
 import { ExitCode, toAthenaError, UserFacingError } from "../errors.js";
 import { askQuestion, renderTerminalCitations } from "../agent/index.js";
 import { loadConfig } from "../config/index.js";
@@ -73,12 +77,121 @@ async function runServeCommand(parsed, streams, environment, logger) {
     });
 }
 async function runIndexCommand(parsed, streams, logger) {
-    const result = await indexFromCliOptions(parsed.options, parsed.options.json
-        ? undefined
-        : (event) => {
-            logger.info(renderIndexProgress(event));
-        });
-    streams.stdout.write(renderIndexResult(result, parsed.options.json));
+    const trace = parsed.options.debug
+        ? await createIndexDebugTrace(logger)
+        : undefined;
+    if (trace !== undefined) {
+        logger.debug(`Index debug trace: ${trace.path}`);
+    }
+    try {
+        const result = await indexFromCliOptions(parsed.options, parsed.options.json
+            ? undefined
+            : (event) => {
+                logger.info(renderIndexProgress(event));
+            }, trace === undefined ? undefined : (event) => trace.record(event));
+        const outputResult = trace === undefined ? result : { ...result, debugTracePath: trace.path };
+        if (trace !== undefined) {
+            logger.debug(`Index debug trace written: ${trace.path}`);
+        }
+        streams.stdout.write(renderIndexResult(outputResult, parsed.options.json));
+    }
+    catch (error) {
+        if (trace !== undefined) {
+            logger.debug(`Index debug trace written: ${trace.path}`);
+        }
+        throw error;
+    }
+}
+async function createIndexDebugTrace(logger) {
+    const directory = path.join(tmpdir(), "athena-traces");
+    const tracePath = path.join(directory, `index-${new Date().toISOString().replace(/[:.]/gu, "-")}-${randomUUID()}.ndjson`);
+    await mkdir(directory, { recursive: true });
+    await writeFile(tracePath, "", "utf8");
+    return {
+        path: tracePath,
+        async record(event) {
+            logger.debug(renderIndexTraceEvent(event));
+            try {
+                await appendFile(tracePath, `${JSON.stringify(event)}\n`, "utf8");
+            }
+            catch (error) {
+                logger.error(`Could not write index debug trace: ${String(error)}`);
+            }
+        }
+    };
+}
+function renderIndexTraceEvent(event) {
+    switch (event.type) {
+        case "index_start":
+            return `Indexing ${readTraceString(event, "root") ?? "root"} into ${readTraceString(event, "databasePath") ?? "database"}`;
+        case "discovery_complete":
+            return `Discovered ${String(readTraceNumber(event, "discovered") ?? 0)} source(s)`;
+        case "source_state":
+            return [
+                `Source ${readTracePath(event)}:`,
+                `kind=${readTraceString(event, "kind") ?? "unknown"}`,
+                `size=${String(readTraceNumber(event, "sizeBytes") ?? 0)} bytes`,
+                `hash=${readTraceString(event, "contentHash") ?? "unknown"}`,
+                `parser=${readTraceString(event, "parserName") ?? "unknown"}@${readTraceString(event, "parserVersion") ?? "unknown"}`,
+                `options=${readTraceString(event, "parserOptionsHash") ?? "unknown"}`
+            ].join(" ");
+        case "source_skipped":
+            return `Skipped ${readTracePath(event)} (unchanged: content hash, parser, version, and parser options match the existing index)`;
+        case "source_parse_start":
+            return `Parsing ${readTracePath(event)} with ${readTraceString(event, "parserName") ?? "parser"}`;
+        case "source_parse_success":
+            return [
+                `Parsed ${readTracePath(event)}`,
+                `(${String(readTraceNumber(event, "blocks") ?? 0)} blocks,`,
+                `${String(readTraceArrayLength(event, "warnings"))} warnings,`,
+                `${String(readTraceArrayLength(event, "artifacts"))} artifacts)`
+            ].join(" ");
+        case "source_parse_skipped":
+            return `Skipped parsing ${readTracePath(event)} (${readTraceString(event, "reason") ?? "no parser result"})`;
+        case "source_parse_failed":
+            return `Failed parsing ${readTracePath(event)}: ${renderTraceError(event.error)}`;
+        case "source_deleted":
+            return `Deleted ${readTracePath(event)} from the index (${readTraceString(event, "reason") ?? "not discovered"})`;
+        case "embedding_sync_start":
+            return "Synchronizing embeddings";
+        case "embedding_sync_complete":
+            return `Synchronized embeddings: ${String(readTraceNumber(event, "embedded") ?? 0)} new vector(s)`;
+        case "index_success":
+            return `Index run ${readTraceString(event, "runId") ?? "completed"} succeeded`;
+        case "index_failed":
+            return `Index run ${readTraceString(event, "runId") ?? "failed"} failed: ${renderTraceError(event.error)}`;
+        default:
+            return `Index trace event: ${event.type}`;
+    }
+}
+function readTracePath(event) {
+    return readTraceString(event, "path") ?? "<unknown>";
+}
+function readTraceString(event, key) {
+    const value = event[key];
+    return typeof value === "string" ? value : undefined;
+}
+function readTraceNumber(event, key) {
+    const value = event[key];
+    return typeof value === "number" && Number.isFinite(value)
+        ? value
+        : undefined;
+}
+function readTraceArrayLength(event, key) {
+    const value = event[key];
+    return Array.isArray(value) ? value.length : 0;
+}
+function renderTraceError(error) {
+    if (typeof error !== "object" || error === null) {
+        return String(error);
+    }
+    const record = error;
+    const message = typeof record.message === "string" ? record.message : "Unknown trace error";
+    const cause = record.cause;
+    if (cause === undefined) {
+        return message;
+    }
+    return `${message}; caused by ${renderTraceError(cause)}`;
 }
 function assertIndexReady(parsed) {
     const database = inspectDatabase(parsed.options.root, parsed.options.db);
@@ -94,10 +207,20 @@ async function runMcpCommand(parsed, streams) {
     await runMcpServer({
         root: parsed.options.root,
         ...(parsed.options.db === undefined ? {} : { dbPath: parsed.options.db }),
+        agentProvider: await resolveAgentProvider(parsed),
         input: streams.stdin,
         output: streams.stdout
     });
 }
+async function resolveAgentProvider(parsed) {
+    if (parsed.options.agentProvider !== undefined) {
+        return parsed.options.agentProvider;
+    }
+    const loadedConfig = await loadConfig(parsed.options.config === undefined
+        ? { root: parsed.options.root }
+        : { root: parsed.options.root, configPath: parsed.options.config });
+    return loadedConfig.config.agent.provider;
+}
 async function runAskCommand(parsed, streams, environment) {
     const question = parsed.args.join(" ").trim();
     if (question === "") {

package/dist/cli/run.js.map

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package/dist/config/index.d.ts

@@ -1,4 +1,4 @@
-export type { AthenaConfig, AthenaUserConfig, ChatProvider, ChatProviderConfig, ConfigDiagnostic, EmbeddingProvider, EmbeddingProviderConfig, IndexConfig, LoadedConfig, PdfConfig, ServerConfig } from "./types.js";
+export type { AgentConfig, AgentProvider, AthenaConfig, AthenaUserConfig, ChatProvider, ChatProviderConfig, ConfigDiagnostic, EmbeddingProvider, EmbeddingProviderConfig, IndexConfig, LoadedConfig, PdfConfig, ServerConfig } from "./types.js";
 export { DEFAULT_CONFIG_FILENAMES, defaultAthenaConfig, defineConfig } from "./schema.js";
 export { ConfigValidationError, discoverConfigFile, loadConfig, resolveConfig } from "./loader.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/config/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/config/index.ts"],"names":[],"mappings":"AAAA,YAAY,EACV,YAAY,EACZ,gBAAgB,EAChB,YAAY,EACZ,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,uBAAuB,EACvB,WAAW,EACX,YAAY,EACZ,SAAS,EACT,YAAY,EACb,MAAM,YAAY,CAAC;AACpB,OAAO,EACL,wBAAwB,EACxB,mBAAmB,EACnB,YAAY,EACb,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,UAAU,EACV,aAAa,EACd,MAAM,aAAa,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/config/index.ts"],"names":[],"mappings":"AAAA,YAAY,EACV,WAAW,EACX,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,YAAY,EACZ,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,uBAAuB,EACvB,WAAW,EACX,YAAY,EACZ,SAAS,EACT,YAAY,EACb,MAAM,YAAY,CAAC;AACpB,OAAO,EACL,wBAAwB,EACxB,mBAAmB,EACnB,YAAY,EACb,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,UAAU,EACV,aAAa,EACd,MAAM,aAAa,CAAC"}

package/dist/config/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/config/index.ts"],"names":[],"mappings":"AAaA,OAAO,EACL,wBAAwB,EACxB,mBAAmB,EACnB,YAAY,EACb,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,UAAU,EACV,aAAa,EACd,MAAM,aAAa,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/config/index.ts"],"names":[],"mappings":"AAeA,OAAO,EACL,wBAAwB,EACxB,mBAAmB,EACnB,YAAY,EACb,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,qBAAqB,EACrB,kBAAkB,EAClB,UAAU,EACV,aAAa,EACd,MAAM,aAAa,CAAC"}

package/dist/config/loader.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../src/config/loader.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAE/C,OAAO,KAAK,EACV,YAAY,EAEZ,gBAAgB,EAEhB,YAAY,EACb,MAAM,YAAY,CAAC;AAEpB,qBAAa,qBAAsB,SAAQ,eAAe;aACrB,WAAW,EAAE,gBAAgB,EAAE;gBAA/B,WAAW,EAAE,gBAAgB,EAAE;CAUnE;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAeD,wBAAsB,UAAU,CAC9B,OAAO,EAAE,iBAAiB,GACzB,OAAO,CAAC,YAAY,CAAC,CASvB;AAED,wBAAgB,kBAAkB,CAChC,IAAI,EAAE,MAAM,EACZ,kBAAkB,CAAC,EAAE,MAAM,GAC1B,MAAM,GAAG,IAAI,CAwBf;AAED,wBAAgB,aAAa,CAAC,SAAS,EAAE,OAAO,GAAG,YAAY,CAsB9D"}
+{"version":3,"file":"loader.d.ts","sourceRoot":"","sources":["../../src/config/loader.ts"],"names":[],"mappings":"AAOA,OAAO,EAAE,eAAe,EAAE,MAAM,cAAc,CAAC;AAE/C,OAAO,KAAK,EACV,YAAY,EAEZ,gBAAgB,EAEhB,YAAY,EACb,MAAM,YAAY,CAAC;AAEpB,qBAAa,qBAAsB,SAAQ,eAAe;aACrB,WAAW,EAAE,gBAAgB,EAAE;gBAA/B,WAAW,EAAE,gBAAgB,EAAE;CAUnE;AAED,MAAM,WAAW,iBAAiB;IAChC,IAAI,EAAE,MAAM,CAAC;IACb,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAeD,wBAAsB,UAAU,CAC9B,OAAO,EAAE,iBAAiB,GACzB,OAAO,CAAC,YAAY,CAAC,CASvB;AAED,wBAAgB,kBAAkB,CAChC,IAAI,EAAE,MAAM,EACZ,kBAAkB,CAAC,EAAE,MAAM,GAC1B,MAAM,GAAG,IAAI,CAwBf;AAED,wBAAgB,aAAa,CAAC,SAAS,EAAE,OAAO,GAAG,YAAY,CAuB9D"}

package/dist/config/loader.js

@@ -64,6 +64,7 @@ export function resolveConfig(rawConfig) {
     applyIndexConfig(config, rawConfig, diagnostics);
     applyEmbeddingConfig(config, rawConfig, diagnostics);
     applyChatConfig(config, rawConfig, diagnostics);
+    applyAgentConfig(config, rawConfig, diagnostics);
     applyPdfConfig(config, rawConfig, diagnostics);
     applyServerConfig(config, rawConfig, diagnostics);
     applyRemoteProviderGuards(config, diagnostics);
@@ -162,6 +163,15 @@ function applyChatConfig(config, rawConfig, diagnostics) {
         config.chat.allowRemoteDocumentText = value;
     });
 }
+function applyAgentConfig(config, rawConfig, diagnostics) {
+    const agent = readSection(rawConfig, "agent", diagnostics);
+    if (agent === undefined) {
+        return;
+    }
+    readEnum(agent, "agent.provider", ["opencode", "codex"], diagnostics, (value) => {
+        config.agent.provider = value;
+    });
+}
 function applyPdfConfig(config, rawConfig, diagnostics) {
     const pdf = readSection(rawConfig, "pdf", diagnostics);
     if (pdf === undefined) {

package/dist/config/loader.js.map

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package/dist/config/schema.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEjE,eAAO,MAAM,wBAAwB,0EAI3B,CAAC;AAEX,eAAO,MAAM,mBAAmB,EAAE,YAkDjC,CAAC;AAEF,wBAAgB,YAAY,CAAC,OAAO,SAAS,gBAAgB,EAC3D,MAAM,EAAE,OAAO,GACd,OAAO,CAET;AAED,wBAAgB,kBAAkB,IAAI,YAAY,CAWjD"}
+{"version":3,"file":"schema.d.ts","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,YAAY,EAAE,gBAAgB,EAAE,MAAM,YAAY,CAAC;AAEjE,eAAO,MAAM,wBAAwB,0EAI3B,CAAC;AAEX,eAAO,MAAM,mBAAmB,EAAE,YAqDjC,CAAC;AAEF,wBAAgB,YAAY,CAAC,OAAO,SAAS,gBAAgB,EAC3D,MAAM,EAAE,OAAO,GACd,OAAO,CAET;AAED,wBAAgB,kBAAkB,IAAI,YAAY,CAYjD"}

package/dist/config/schema.js

@@ -42,6 +42,9 @@ export const defaultAthenaConfig = {
         model: null,
         allowRemoteDocumentText: false
     },
+    agent: {
+        provider: "opencode"
+    },
     pdf: {
         parser: "pdf-2-llm",
         pageAnchors: true,
@@ -65,6 +68,7 @@ export function cloneDefaultConfig() {
         },
         embeddings: { ...defaultAthenaConfig.embeddings },
         chat: { ...defaultAthenaConfig.chat },
+        agent: { ...defaultAthenaConfig.agent },
         pdf: { ...defaultAthenaConfig.pdf },
         server: { ...defaultAthenaConfig.server }
     };

package/dist/config/schema.js.map

@@ -1 +1 @@
-{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,kBAAkB;IAClB,mBAAmB;IACnB,oBAAoB;CACZ,CAAC;AAEX,MAAM,CAAC,MAAM,mBAAmB,GAAiB;IAC/C,KAAK,EAAE;QACL,OAAO,EAAE;YACP,SAAS;YACT,UAAU;YACV,UAAU;YACV,UAAU;YACV,WAAW;YACX,WAAW;YACX,UAAU;YACV,UAAU;YACV,WAAW;YACX,cAAc;YACd,iBAAiB;YACjB,YAAY;YACZ,WAAW;SACZ;QACD,OAAO,EAAE;YACP,SAAS;YACT,iBAAiB;YACjB,YAAY;YACZ,SAAS;YACT,UAAU;YACV,aAAa;SACd;KACF;IACD,UAAU,EAAE;QACV,QAAQ,EAAE,iBAAiB;QAC3B,KAAK,EAAE,qCAAqC;QAC5C,UAAU,EAAE,GAAG;QACf,OAAO,EAAE,MAAM;QACf,SAAS,EAAE,IAAI;QACf,uBAAuB,EAAE,KAAK;KAC/B;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,MAAM;QAChB,KAAK,EAAE,IAAI;QACX,uBAAuB,EAAE,KAAK;KAC/B;IACD,GAAG,EAAE;QACH,MAAM,EAAE,WAAW;QACnB,WAAW,EAAE,IAAI;QACjB,WAAW,EAAE,IAAI;QACjB,SAAS,EAAE,MAAM;QACjB,4BAA4B,EAAE,IAAI;KACnC;IACD,MAAM,EAAE;QACN,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE,IAAI;KACX;CACF,CAAC;AAEF,MAAM,UAAU,YAAY,CAC1B,MAAe;IAEf,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,kBAAkB;IAChC,OAAO;QACL,KAAK,EAAE;YACL,OAAO,EAAE,CAAC,GAAG,mBAAmB,CAAC,KAAK,CAAC,OAAO,CAAC;YAC/C,OAAO,EAAE,CAAC,GAAG,mBAAmB,CAAC,KAAK,CAAC,OAAO,CAAC;SAChD;QACD,UAAU,EAAE,EAAE,GAAG,mBAAmB,CAAC,UAAU,EAAE;QACjD,IAAI,EAAE,EAAE,GAAG,mBAAmB,CAAC,IAAI,EAAE;QACrC,GAAG,EAAE,EAAE,GAAG,mBAAmB,CAAC,GAAG,EAAE;QACnC,MAAM,EAAE,EAAE,GAAG,mBAAmB,CAAC,MAAM,EAAE;KAC1C,CAAC;AACJ,CAAC"}
+{"version":3,"file":"schema.js","sourceRoot":"","sources":["../../src/config/schema.ts"],"names":[],"mappings":"AAEA,MAAM,CAAC,MAAM,wBAAwB,GAAG;IACtC,kBAAkB;IAClB,mBAAmB;IACnB,oBAAoB;CACZ,CAAC;AAEX,MAAM,CAAC,MAAM,mBAAmB,GAAiB;IAC/C,KAAK,EAAE;QACL,OAAO,EAAE;YACP,SAAS;YACT,UAAU;YACV,UAAU;YACV,UAAU;YACV,WAAW;YACX,WAAW;YACX,UAAU;YACV,UAAU;YACV,WAAW;YACX,cAAc;YACd,iBAAiB;YACjB,YAAY;YACZ,WAAW;SACZ;QACD,OAAO,EAAE;YACP,SAAS;YACT,iBAAiB;YACjB,YAAY;YACZ,SAAS;YACT,UAAU;YACV,aAAa;SACd;KACF;IACD,UAAU,EAAE;QACV,QAAQ,EAAE,iBAAiB;QAC3B,KAAK,EAAE,qCAAqC;QAC5C,UAAU,EAAE,GAAG;QACf,OAAO,EAAE,MAAM;QACf,SAAS,EAAE,IAAI;QACf,uBAAuB,EAAE,KAAK;KAC/B;IACD,IAAI,EAAE;QACJ,QAAQ,EAAE,MAAM;QAChB,KAAK,EAAE,IAAI;QACX,uBAAuB,EAAE,KAAK;KAC/B;IACD,KAAK,EAAE;QACL,QAAQ,EAAE,UAAU;KACrB;IACD,GAAG,EAAE;QACH,MAAM,EAAE,WAAW;QACnB,WAAW,EAAE,IAAI;QACjB,WAAW,EAAE,IAAI;QACjB,SAAS,EAAE,MAAM;QACjB,4BAA4B,EAAE,IAAI;KACnC;IACD,MAAM,EAAE;QACN,IAAI,EAAE,WAAW;QACjB,IAAI,EAAE,IAAI;KACX;CACF,CAAC;AAEF,MAAM,UAAU,YAAY,CAC1B,MAAe;IAEf,OAAO,MAAM,CAAC;AAChB,CAAC;AAED,MAAM,UAAU,kBAAkB;IAChC,OAAO;QACL,KAAK,EAAE;YACL,OAAO,EAAE,CAAC,GAAG,mBAAmB,CAAC,KAAK,CAAC,OAAO,CAAC;YAC/C,OAAO,EAAE,CAAC,GAAG,mBAAmB,CAAC,KAAK,CAAC,OAAO,CAAC;SAChD;QACD,UAAU,EAAE,EAAE,GAAG,mBAAmB,CAAC,UAAU,EAAE;QACjD,IAAI,EAAE,EAAE,GAAG,mBAAmB,CAAC,IAAI,EAAE;QACrC,KAAK,EAAE,EAAE,GAAG,mBAAmB,CAAC,KAAK,EAAE;QACvC,GAAG,EAAE,EAAE,GAAG,mBAAmB,CAAC,GAAG,EAAE;QACnC,MAAM,EAAE,EAAE,GAAG,mBAAmB,CAAC,MAAM,EAAE;KAC1C,CAAC;AACJ,CAAC"}

package/dist/config/types.d.ts

@@ -17,6 +17,10 @@ export interface ChatProviderConfig {
     model: string | null;
     allowRemoteDocumentText: boolean;
 }
+export type AgentProvider = "opencode" | "codex";
+export interface AgentConfig {
+    provider: AgentProvider;
+}
 export interface PdfConfig {
     parser: "pdf-2-llm";
     pageAnchors: boolean;
@@ -32,6 +36,7 @@ export interface AthenaConfig {
     index: IndexConfig;
     embeddings: EmbeddingProviderConfig;
     chat: ChatProviderConfig;
+    agent: AgentConfig;
     pdf: PdfConfig;
     server: ServerConfig;
 }
@@ -39,6 +44,7 @@ export interface AthenaUserConfig {
     index?: Partial<IndexConfig>;
     embeddings?: Partial<EmbeddingProviderConfig>;
     chat?: Partial<ChatProviderConfig>;
+    agent?: Partial<AgentConfig>;
     pdf?: Partial<PdfConfig>;
     server?: Partial<ServerConfig>;
 }

package/dist/config/types.d.ts.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -6,7 +6,7 @@ export { createLogger } from "./logging/logger.js";
 export { RetrievalToolRuntime, toolSchemas } from "./retrieval/index.js";
 export { startAthenaServer } from "./server/index.js";
 export { SCHEMA_VERSION, countAvailable, getCacheState, getSchemaVersion, initializeDatabase, inspectDatabase, inspectSchema, migrateDatabase, openDatabase, requiredIndexes, requiredTables, resolveAthenaPaths, withTransaction } from "./storage/index.js";
-export type { AthenaConfig, AthenaUserConfig, ChatProvider, ChatProviderConfig, ConfigDiagnostic, EmbeddingProvider, EmbeddingProviderConfig, IndexConfig, LoadedConfig, PdfConfig, ServerConfig } from "./config/index.js";
+export type { AgentConfig, AgentProvider, AthenaConfig, AthenaUserConfig, ChatProvider, ChatProviderConfig, ConfigDiagnostic, EmbeddingProvider, EmbeddingProviderConfig, IndexConfig, LoadedConfig, PdfConfig, ServerConfig } from "./config/index.js";
 export type { Logger, LogLevel, LogSink } from "./logging/logger.js";
 export type { GrepDocsInput, GrepDocsResult, ListDocsInput, ListDocsResult, ReadPdfSourceInput, ReadPdfSourceResult, ReadSourceRangeInput, ReadSourceRangeResult, RelatedChunkResult, RelatedChunksInput, RetrievalTrace, SearchDocsInput, SearchDocsResult } from "./retrieval/index.js";
 export type { AthenaPaths, CacheState, DatabaseHealthReport, DatabaseSchemaHealth, DatabaseStatus, InitializedDatabase } from "./storage/index.js";

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EACL,qBAAqB,EACrB,wBAAwB,EACxB,mBAAmB,EACnB,YAAY,EACZ,kBAAkB,EAClB,UAAU,EACV,aAAa,EACd,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,uBAAuB,EACvB,iBAAiB,EACjB,mBAAmB,EACnB,WAAW,EACX,kBAAkB,EAClB,0BAA0B,EAC1B,6BAA6B,EAC7B,oBAAoB,EACpB,iBAAiB,EACjB,kBAAkB,EAClB,YAAY,EACZ,oBAAoB,EACpB,qBAAqB,EACrB,uBAAuB,EACvB,2BAA2B,EAC3B,uBAAuB,EACxB,MAAM,kBAAkB,CAAC;AAC1B,OAAO,EACL,WAAW,EACX,QAAQ,EACR,eAAe,EACf,eAAe,EAChB,MAAM,aAAa,CAAC;AACrB,OAAO,EACL,0BAA0B,EAC1B,8BAA8B,EAC9B,uBAAuB,EACvB,2BAA2B,EAC3B,uBAAuB,EACvB,uBAAuB,EACvB,YAAY,EACZ,YAAY,EACZ,+BAA+B,EAChC,MAAM,uBAAuB,CAAC;AAC/B,OAAO,EAAE,YAAY,EAAE,MAAM,qBAAqB,CAAC;AACnD,OAAO,EAAE,oBAAoB,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AACzE,OAAO,EAAE,iBAAiB,EAAE,MAAM,mBAAmB,CAAC;AACtD,OAAO,EACL,cAAc,EACd,cAAc,EACd,aAAa,EACb,gBAAgB,EAChB,kBAAkB,EAClB,eAAe,EACf,aAAa,EACb,eAAe,EACf,YAAY,EACZ,eAAe,EACf,cAAc,EACd,kBAAkB,EAClB,eAAe,EAChB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EACV,WAAW,EACX,aAAa,EACb,YAAY,EACZ,gBAAgB,EAChB,YAAY,EACZ,kBAAkB,EAClB,gBAAgB,EAChB,iBAAiB,EACjB,uBAAuB,EACvB,WAAW,EACX,YAAY,EACZ,SAAS,EACT,YAAY,EACb,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EAAE,MAAM,EAAE,QAAQ,EAAE,OAAO,EAAE,MAAM,qBAAqB,CAAC;AACrE,YAAY,EACV,aAAa,EACb,cAAc,EACd,aAAa,EACb,cAAc,EACd,kBAAkB,EAClB,mBAAmB,EACnB,oBAAoB,EACpB,qBAAqB,EACrB,kBAAkB,EAClB,kBAAkB,EAClB,cAAc,EACd,eAAe,EACf,gBAAgB,EACjB,MAAM,sBAAsB,CAAC;AAC9B,YAAY,EACV,WAAW,EACX,UAAU,EACV,oBAAoB,EACpB,oBAAoB,EACpB,cAAc,EACd,mBAAmB,EACpB,MAAM,oBAAoB,CAAC;AAC5B,YAAY,EACV,YAAY,EACZ,YAAY,EACZ,kBAAkB,EACnB,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,WAAW,EACX,QAAQ,EACR,cAAc,EACd,cAAc,EACd,UAAU,EACV,aAAa,EACb,UAAU,EACV,aAAa,EACb,YAAY,EACZ,WAAW,EACX,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,YAAY,EACV,qBAAqB,EACrB,UAAU,EACV,cAAc,EACd,eAAe,EACf,gBAAgB,EAChB,uBAAuB,EACvB,0BAA0B,EAC1B,SAAS,EACT,UAAU,EACV,iBAAiB,EACjB,YAAY,EACZ,aAAa,EACb,oBAAoB,EACpB,SAAS,EACT,aAAa,EACb,kBAAkB,EAClB,mBAAmB,EACnB,sBAAsB,EACtB,cAAc,EACd,iBAAiB,EACjB,kBAAkB,EAClB,gBAAgB,EAChB,4BAA4B,EAC7B,MAAM,kBAAkB,CAAC;AAC1B,YAAY,EACV,sBAAsB,EACtB,8BAA8B,EAC9B,cAAc,EACd,eAAe,EACf,uBAAuB,EACvB,uBAAuB,EACvB,SAAS,IAAI,kBAAkB,EAChC,MAAM,uBAAuB,CAAC"}

package/dist/indexer/index.d.ts

@@ -3,5 +3,5 @@ export { hashFile, hashString } from "./hash.js";
 export { classifySourceKind, isSupportedSourceKind } from "./kinds.js";
 export { indexFromCliOptions, indexRoot, renderIndexProgress, renderIndexResult } from "./run.js";
 export type { DiscoveredSource } from "./discovery.js";
-export type { IndexCounts, IndexProgressEvent, IndexProgressReporter, IndexResult, IndexRootOptions } from "./run.js";
+export type { IndexCounts, IndexProgressEvent, IndexProgressReporter, IndexResult, IndexRootOptions, IndexTraceEvent, IndexTraceReporter, SerializedTraceError } from "./run.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/indexer/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/indexer/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AACxE,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACjD,OAAO,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AACvE,OAAO,EACL,mBAAmB,EACnB,SAAS,EACT,mBAAmB,EACnB,iBAAiB,EAClB,MAAM,UAAU,CAAC;AAClB,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AACvD,YAAY,EACV,WAAW,EACX,kBAAkB,EAClB,qBAAqB,EACrB,WAAW,EACX,gBAAgB,EACjB,MAAM,UAAU,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../src/indexer/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,eAAe,EAAE,qBAAqB,EAAE,MAAM,gBAAgB,CAAC;AACxE,OAAO,EAAE,QAAQ,EAAE,UAAU,EAAE,MAAM,WAAW,CAAC;AACjD,OAAO,EAAE,kBAAkB,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AACvE,OAAO,EACL,mBAAmB,EACnB,SAAS,EACT,mBAAmB,EACnB,iBAAiB,EAClB,MAAM,UAAU,CAAC;AAClB,YAAY,EAAE,gBAAgB,EAAE,MAAM,gBAAgB,CAAC;AACvD,YAAY,EACV,WAAW,EACX,kBAAkB,EAClB,qBAAqB,EACrB,WAAW,EACX,gBAAgB,EAChB,eAAe,EACf,kBAAkB,EAClB,oBAAoB,EACrB,MAAM,UAAU,CAAC"}

package/dist/indexer/run.d.ts

@@ -15,6 +15,7 @@ export interface IndexResult {
     databasePath: string;
     runId: string;
     counts: IndexCounts;
+    debugTracePath?: string;
 }
 export interface IndexProgressEvent {
     type: "embedding_batch";
@@ -28,15 +29,29 @@ export interface IndexProgressEvent {
     model: string;
 }
 export type IndexProgressReporter = (event: IndexProgressEvent) => void;
-export declare function indexFromCliOptions(options: CliOptions, onProgress?: IndexProgressReporter): Promise<IndexResult>;
+export interface SerializedTraceError {
+    name: string;
+    message: string;
+    stack?: string;
+    cause?: SerializedTraceError;
+}
+export interface IndexTraceEvent {
+    type: string;
+    timestamp: string;
+    [key: string]: unknown;
+}
+export type IndexTraceReporter = (event: IndexTraceEvent) => void | Promise<void>;
+export declare function indexFromCliOptions(options: CliOptions, onProgress?: IndexProgressReporter, onTrace?: IndexTraceReporter): Promise<IndexResult>;
 export interface IndexRootOptions {
     root: string;
     dbPath?: string;
     loadedConfig?: LoadedConfig;
     onProgress?: IndexProgressReporter;
+    onTrace?: IndexTraceReporter;
     pdfConverter?: Pdf2LlmConverter;
 }
 export declare function indexRoot(options: IndexRootOptions): Promise<IndexResult>;
 export declare function renderIndexResult(result: IndexResult, json: boolean): string;
 export declare function renderIndexProgress(event: IndexProgressEvent): string;
+export declare function serializeTraceError(error: unknown): SerializedTraceError;
 //# sourceMappingURL=run.d.ts.map

package/dist/indexer/run.d.ts.map

@@ -1 +1 @@
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