@aleph-ai/tinyaleph 1.4.0 → 1.4.2

package/docs/design/PYTHON_PORT_DESIGN.md

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+# ResoAleph: Unified Python Library Design
+
+## Prime Resonance Computing Framework
+
+A comprehensive Python port unifying TinyAleph and ResoLang into a powerful, flexible, and scalable library for prime-resonant semantic computing, hypercomplex algebra, and quantum-inspired dynamics.
+
+---
+
+## 1. Executive Summary
+
+### 1.1 Vision
+
+**ResoAleph** is a unified Python library that combines:
+- **TinyAleph's** prime Hilbert space mathematics, hypercomplex algebra, and Kuramoto dynamics
+- **ResoLang's** Prime Resonance Network protocols, quaternionic entanglement, and holographic memory
+
+The result is a powerful framework for:
+- Quantum-inspired symbolic computing
+- Prime-based semantic encoding
+- Hypercomplex neural network primitives
+- Distributed entanglement networks
+- Entropy-minimizing reasoning systems
+
+### 1.2 Shared Concepts Between TinyAleph and ResoLang
+
+Both libraries share these core mathematical foundations:
+
+| Concept | TinyAleph | ResoLang | Unified Python |
+|---------|-----------|----------|----------------|
+| **Complex Numbers** | `Complex` class in `hilbert.js` | `Complex` in `types.ts` | `resoaleph.core.Complex` |
+| **Quaternions** | `Quaternion` in `rformer.js` | `Quaternion` in `quaternion.ts` | `resoaleph.core.Quaternion` |
+| **Prime States** | `PrimeState` in `hilbert.js` | `PrimeState` in `prime-state.ts` | `resoaleph.hilbert.PrimeState` |
+| **Entropy** | Shannon entropy functions | Entropy evolution | `resoaleph.physics.entropy` |
+| **Resonance** | Golden ratio calculator | Resonance field | `resoaleph.resonance` |
+| **Memory Fields** | Holographic encoding | Resonant fragments | `resoaleph.resonance.fragment` |
+| **Network Nodes** | Entangled nodes | Entangled nodes | `resoaleph.network.node` |
+| **Collapse** | Born measurement | Collapse operator | `resoaleph.hilbert.measurement` |
+
+### 1.3 Design Principles
+
+1. **Mathematical Rigor** - Faithful implementation of theoretical foundations
+2. **Pythonic API** - Clean, intuitive interfaces following PEP standards
+3. **Performance** - GPU acceleration via JAX/CuPy, vectorized operations via NumPy
+4. **Extensibility** - Plugin architecture for custom backends and operators
+5. **Type Safety** - Full type hints with Pydantic validation
+6. **Scalability** - Distributed computing support via Ray/Dask
+
+---
+
+## 2. Architecture Overview
+
+```
+resoaleph/
+├── core/                       # Mathematical foundations
+│   ├── __init__.py
+│   ├── complex.py             # Complex number operations
+│   ├── quaternion.py          # Quaternion algebra (Hamilton)
+│   ├── hypercomplex.py        # Cayley-Dickson construction (2^n dimensions)
+│   ├── primes.py              # Prime number utilities & generators
+│   ├── number_fields.py       # Gaussian, Eisenstein integers
+│   └── constants.py           # PHI, DELTA_S, etc.
+│
+├── hilbert/                    # Prime Hilbert Space
+│   ├── __init__.py
+│   ├── state.py               # PrimeState class
+│   ├── operators.py           # P̂, F̂, R̂, Ĉ operators
+│   ├── evolution.py           # Entropy-driven evolution
+│   ├── measurement.py         # Born measurement, collapse
+│   └── extended_ops.py        # Möbius, Euler totient operators
+│
+├── physics/                    # Synchronization & dynamics
+│   ├── __init__.py
+│   ├── oscillator.py          # Base oscillator classes
+│   ├── kuramoto.py            # Kuramoto model variants
+│   ├── entropy.py             # Shannon, state, coherence entropy
+│   ├── lyapunov.py            # Stability analysis
+│   ├── collapse.py            # State collapse dynamics
+│   └── z_ladder.py            # Primeon Z-ladder evolution
+│
+├── resonance/                  # Resonance computing
+│   ├── __init__.py
+│   ├── fragment.py            # ResonantFragment holographic memory
+│   ├── field.py               # QuaternionicResonanceField
+│   ├── operators.py           # Tensor, collapse, phase ops
+│   ├── calculator.py          # Golden ratio resonance
+│   ├── patterns.py            # Semantic pattern detection
+│   └── wavelets.py            # Fibonacci wavelet analysis
+│
+├── network/                    # Prime Resonance Network
+│   ├── __init__.py
+│   ├── identity.py            # PrimeResonanceIdentity (PRI)
+│   ├── node.py                # EntangledNode
+│   ├── entanglement.py        # Entanglement protocols
+│   ├── teleportation.py       # Memory teleportation
+│   ├── routing.py             # Resonance routing
+│   └── protocols.py           # EIP, MTP, RRP protocols
+│
+├── ml/                         # Machine learning primitives
+│   ├── __init__.py
+│   ├── sparse_state.py        # SparsePrimeState (H_Q = H_P ⊗ ℍ)
+│   ├── attention.py           # Resonant attention mechanisms
+│   ├── composition.py         # Hamilton product composition
+│   ├── halting.py             # Coherence-gated halting (ACT)
+│   ├── collapse_head.py       # 64-codebook entropy collapse
+│   ├── graph_memory.py        # PRGraphMemory
+│   └── layers/                # Neural network layers
+│       ├── __init__.py
+│       ├── attention.py       # ResonantMultiHeadAttention
+│       ├── ffn.py             # PrimeFFN
+│       ├── norm.py            # PrimeLayerNorm
+│       ├── encoding.py        # PositionalPrimeEncoding
+│       ├── block.py           # ResoFormerBlock
+│       └── transformer.py     # Full ResoFormer model
+│
+├── observer/                   # Sentient Observer architecture
+│   ├── __init__.py
+│   ├── smf.py                 # Sedenion Memory Field
+│   ├── prsc.py                # Prime Resonance Semantic Coherence
+│   ├── temporal.py            # Temporal layer & moments
+│   ├── entanglement.py        # Entanglement layer
+│   ├── agency.py              # Agency, attention, goals
+│   ├── boundary.py            # Self/environment distinction
+│   ├── safety.py              # Ethical constraints
+│   └── hqe.py                 # Holographic Quantum Encoding
+│
+├── backends/                   # Domain-specific backends
+│   ├── __init__.py
+│   ├── interface.py           # Backend base class
+│   ├── semantic.py            # NLP, concept mapping
+│   ├── cryptographic.py       # Hashing, key derivation
+│   ├── scientific.py          # Quantum simulation
+│   └── bioinformatics.py      # DNA/protein computing
+│
+├── symbolic/                   # Symbolic computation
+│   ├── __init__.py
+│   ├── types.py               # Noun, Adj, Sentence types
+│   ├── reduction.py           # Reduction semantics
+│   ├── lambda_calc.py         # Lambda calculus translation
+│   └── enochian.py            # Enochian packet layer
+│
+├── runtime/                    # Execution runtime
+│   ├── __init__.py
+│   ├── engine.py              # AlephEngine
+│   ├── risa.py                # RISA instruction engine
+│   ├── processor.py           # Instruction processor
+│   └── context.py             # Execution context
+│
+├── utils/                      # Utilities
+│   ├── __init__.py
+│   ├── serialization.py       # JSON builders
+│   ├── validation.py          # Pydantic validators
+│   ├── logging.py             # Structured logging
+│   ├── metrics.py             # Prometheus-compatible metrics
+│   └── profiling.py           # Performance profiling
+│
+└── distributed/                # Distributed computing
+    ├── __init__.py
+    ├── transport.py           # WebSocket, SSE, polling
+    ├── coordinator.py         # Network coordination
+    └── ray_backend.py         # Ray integration
+```
+
+---
+
+## 3. Third-Party Dependencies
+
+### 3.1 Core Scientific Computing (Required)
+
+```toml
+[project]
+name = "resoaleph"
+version = "0.1.0"
+requires-python = ">=3.10"
+
+dependencies = [
+    # Core numerical computing
+    "numpy>=1.24.0",
+    "scipy>=1.11.0",
+    "sympy>=1.12",
+    
+    # Type safety & validation
+    "pydantic>=2.5.0",
+    "typing-extensions>=4.8.0",
+    
+    # Async & concurrency
+    "aiohttp>=3.9.0",
+    
+    # Serialization
+    "msgpack>=1.0.7",
+    "orjson>=3.9.10",
+    
+    # Logging & monitoring
+    "structlog>=23.2.0",
+]
+```
+
+### 3.2 GPU Acceleration (Optional)
+
+```toml
+[project.optional-dependencies]
+gpu = [
+    "jax>=0.4.20",
+    "jaxlib>=0.4.20",
+]
+
+cuda = [
+    "cupy>=12.0.0",
+]
+```
+
+### 3.3 Machine Learning (Optional)
+
+```toml
+ml = [
+    "torch>=2.1.0",
+    "einops>=0.7.0",
+    "transformers>=4.35.0",
+]
+```
+
+### 3.4 Distributed Computing (Optional)
+
+```toml
+distributed = [
+    "ray>=2.8.0",
+    "dask>=2023.11.0",
+    "websockets>=12.0",
+]
+```
+
+### 3.5 Visualization (Optional)
+
+```toml
+viz = [
+    "matplotlib>=3.8.0",
+    "plotly>=5.18.0",
+    "networkx>=3.2",
+]
+```
+
+### 3.6 Development Dependencies
+
+```toml
+[project.optional-dependencies]
+dev = [
+    "pytest>=7.4.0",
+    "pytest-asyncio>=0.21.0",
+    "pytest-benchmark>=4.0.0",
+    "hypothesis>=6.88.0",
+    "mypy>=1.7.0",
+    "ruff>=0.1.6",
+    "black>=23.11.0",
+]
+```
+
+---
+
+## 4. Core Module Designs
+
+### 4.1 Complex Numbers (`core/complex.py`)
+
+```python
+"""
+Complex number operations with full operator overloading.
+"""
+from __future__ import annotations
+import numpy as np
+from pydantic import BaseModel, Field
+
+
+class Complex(BaseModel):
+    """Complex number with full arithmetic operations."""
+    re: float = Field(default=0.0)
+    im: float = Field(default=0.0)
+    
+    @classmethod
+    def from_polar(cls, r: float, theta: float) -> Complex:
+        return cls(re=r * np.cos(theta), im=r * np.sin(theta))
+    
+    @classmethod
+    def zero(cls) -> Complex:
+        return cls(re=0.0, im=0.0)
+    
+    @classmethod
+    def one(cls) -> Complex:
+        return cls(re=1.0, im=0.0)
+    
+    def __add__(self, other: Complex) -> Complex:
+        return Complex(re=self.re + other.re, im=self.im + other.im)
+    
+    def __mul__(self, other: Complex | float) -> Complex:
+        if isinstance(other, (int, float)):
+            return Complex(re=self.re * other, im=self.im * other)
+        return Complex(
+            re=self.re * other.re - self.im * other.im,
+            im=self.re * other.im + self.im * other.re
+        )
+    
+    def conj(self) -> Complex:
+        return Complex(re=self.re, im=-self.im)
+    
+    def norm2(self) -> float:
+        return self.re ** 2 + self.im ** 2
+    
+    def norm(self) -> float:
+        return np.sqrt(self.norm2())
+    
+    def phase(self) -> float:
+        return np.arctan2(self.im, self.re)
+    
+    def exp(self) -> Complex:
+        ea = np.exp(self.re)
+        return Complex(re=ea * np.cos(self.im), im=ea * np.sin(self.im))
+```
+
+### 4.2 Quaternion Algebra (`core/quaternion.py`)
+
+```python
+"""
+Hamilton quaternion algebra with full operations.
+"""
+from __future__ import annotations
+import numpy as np
+from pydantic import BaseModel, Field
+from typing import Tuple
+
+
+class Quaternion(BaseModel):
+    """Hamilton quaternion: q = w + xi + yj + zk"""
+    w: float = Field(default=1.0)
+    x: float = Field(default=0.0)
+    y: float = Field(default=0.0)
+    z: float = Field(default=0.0)
+    
+    @classmethod
+    def from_axis_angle(cls, axis: Tuple[float, float, float], angle: float) -> Quaternion:
+        ax, ay, az = axis
+        norm = np.sqrt(ax*ax + ay*ay + az*az)
+        if norm < 1e-10:
+            return cls()
+        half_angle = angle / 2
+        s = np.sin(half_angle) / norm
+        return cls(w=np.cos(half_angle), x=ax*s, y=ay*s, z=az*s)
+    
+    def __mul__(self, other: Quaternion | float) -> Quaternion:
+        if isinstance(other, (int, float)):
+            return Quaternion(w=self.w*other, x=self.x*other, y=self.y*other, z=self.z*other)
+        # Hamilton product
+        return Quaternion(
+            w=self.w*other.w - self.x*other.x - self.y*other.y - self.z*other.z,
+            x=self.w*other.x + self.x*other.w + self.y*other.z - self.z*other.y,
+            y=self.w*other.y - self.x*other.z + self.y*other.w + self.z*other.x,
+            z=self.w*other.z + self.x*other.y - self.y*other.x + self.z*other.w
+        )
+    
+    def conj(self) -> Quaternion:
+        return Quaternion(w=self.w, x=-self.x, y=-self.y, z=-self.z)
+    
+    def norm(self) -> float:
+        return np.sqrt(self.w**2 + self.x**2 + self.y**2 + self.z**2)
+    
+    def normalize(self) -> Quaternion:
+        n = self.norm()
+        return self * (1/n) if n > 1e-10 else Quaternion()
+    
+    def commutator(self, other: Quaternion) -> Quaternion:
+        """[q1, q2] = q1*q2 - q2*q1 (non-commutativity measure)"""
+        return self * other + (other * self) * (-1)
+    
+    def slerp(self, other: Quaternion, t: float) -> Quaternion:
+        """Spherical linear interpolation."""
+        dot = self.w*other.w + self.x*other.x + self.y*other.y + self.z*other.z
+        q2 = other if dot >= 0 else Quaternion(w=-other.w, x=-other.x, y=-other.y, z=-other.z)
+        dot = abs(dot)
+        
+        if dot > 0.9995:
+            # Linear interpolation for close quaternions
+            result = Quaternion(
+                w=self.w + t*(q2.w - self.w),
+                x=self.x + t*(q2.x - self.x),
+                y=self.y + t*(q2.y - self.y),
+                z=self.z + t*(q2.z - self.z)
+            )
+            return result.normalize()
+        
+        theta = np.arccos(dot)
+        sin_theta = np.sin(theta)
+        s1 = np.sin((1 - t) * theta) / sin_theta
+        s2 = np.sin(t * theta) / sin_theta
+        
+        return Quaternion(
+            w=s1*self.w + s2*q2.w,
+            x=s1*self.x + s2*q2.x,
+            y=s1*self.y + s2*q2.y,
+            z=s1*self.z + s2*q2.z
+        )
+```
+
+### 4.3 Hypercomplex Algebra (`core/hypercomplex.py`)
+
+```python
+"""
+Generic Cayley-Dickson construction for 2^n dimensional algebras.
+"""
+from __future__ import annotations
+import numpy as np
+from numpy.typing import NDArray
+from functools import lru_cache
+
+
+class Hypercomplex:
+    """Cayley-Dickson algebra of dimension 2^n."""
+    
+    def __init__(self, dim: int, components: NDArray | None = None):
+        if not (dim > 0 and (dim & (dim - 1)) == 0):
+            raise ValueError("Dimension must be power of 2")
+        self.dim = dim
+        self.c = components if components is not None else np.zeros(dim)
+    
+    @staticmethod
+    @lru_cache(maxsize=128)
+    def _multiply_indices(dim: int, i: int, j: int) -> tuple[int, int]:
+        """Get (result_index, sign) for e_i * e_j."""
+        if i == 0: return (j, 1)
+        if j == 0: return (i, 1)
+        if i == j: return (0, -1)
+        
+        half = dim // 2
+        if i < half and j < half:
+            return Hypercomplex._multiply_indices(half, i, j)
+        elif i < half:
+            k, s = Hypercomplex._multiply_indices(half, i, j - half)
+            return (k + half, s)
+        elif j < half:
+            k, s = Hypercomplex._multiply_indices(half, i - half, j)
+            return (k + half, s)
+        else:
+            k, s = Hypercomplex._multiply_indices(half, j - half, i - half)
+            return (k, -s)
+    
+    def __mul__(self, other: Hypercomplex | float) -> Hypercomplex:
+        if isinstance(other, (int, float)):
+            return Hypercomplex(self.dim, self.c * other)
+        result = np.zeros(self.dim)
+        for i in range(self.dim):
+            for j in range(self.dim):
+                k, s = self._multiply_indices(self.dim, i, j)
+                result[k] += s * self.c[i] * other.c[j]
+        return Hypercomplex(self.dim, result)
+    
+    def conj(self) -> Hypercomplex:
+        result = np.zeros(self.dim)
+        result[0] = self.c[0]
+        result[1:] = -self.c[1:]
+        return Hypercomplex(self.dim, result)
+    
+    def norm(self) -> float:
+        return float(np.sqrt(np.dot(self.c, self.c)))
+    
+    def entropy(self) -> float:
+        n = self.norm()
+        if n < 1e-10: return 0.0
+        probs = (self.c / n) ** 2
+        probs = probs[probs > 1e-10]
+        return float(-np.sum(probs * np.log2(probs)))
+```
+
+### 4.4 Prime State (`hilbert/state.py`)
+
+```python
+"""
+Prime Hilbert Space: HP = {|ψ⟩ = Σ αp|p⟩ : Σ|αp|² = 1}
+"""
+from __future__ import annotations
+import numpy as np
+from typing import Dict, List, Tuple
+from sympy import factorint, isprime
+from ..core.complex import Complex
+
+
+def first_n_primes(n: int) -> List[int]:
+    primes = []
+    p = 2
+    while len(primes) < n:
+        if isprime(p):
+            primes.append(p)
+        p += 1
+    return primes
+
+
+class PrimeState:
+    """Quantum state in Prime Hilbert space."""
+    
+    def __init__(self, primes: List[int] | None = None):
+        self.primes = primes or first_n_primes(25)
+        self.amplitudes: Dict[int, Complex] = {p: Complex.zero() for p in self.primes}
+    
+    @classmethod
+    def basis(cls, p: int) -> PrimeState:
+        state = cls()
+        if p in state.amplitudes:
+            state.amplitudes[p] = Complex.one()
+        return state
+    
+    @classmethod
+    def uniform(cls) -> PrimeState:
+        state = cls()
+        n = len(state.primes)
+        amp = Complex(re=1/np.sqrt(n), im=0)
+        for p in state.primes:
+            state.amplitudes[p] = amp
+        return state
+    
+    @classmethod
+    def composite(cls, n: int) -> PrimeState:
+        state = cls()
+        factors = factorint(n)
+        total = sum(factors.values())
+        for p, exp in factors.items():
+            if p in state.amplitudes:
+                state.amplitudes[p] = Complex(re=exp/total, im=0)
+        return state.normalize()
+    
+    def get(self, p: int) -> Complex:
+        return self.amplitudes.get(p, Complex.zero())
+    
+    def norm(self) -> float:
+        return np.sqrt(sum(self.get(p).norm2() for p in self.primes))
+    
+    def normalize(self) -> PrimeState:
+        n = self.norm()
+        if n < 1e-10: return self
+        for p in self.primes:
+            self.amplitudes[p] = self.amplitudes[p] * (1/n)
+        return self
+    
+    def entropy(self) -> float:
+        n2 = self.norm() ** 2
+        if n2 < 1e-10: return 0.0
+        h = 0.0
+        for p in self.primes:
+            prob = self.get(p).norm2() / n2
+            if prob > 1e-10:
+                h -= prob * np.log2(prob)
+        return h
+    
+    def measure(self) -> Tuple[int, float]:
+        """Born measurement."""
+        n2 = self.norm() ** 2
+        r = np.random.random() * n2
+        cumulative = 0.0
+        for p in self.primes:
+            prob = self.get(p).norm2()
+            cumulative += prob
+            if r < cumulative:
+                return (p, prob / n2)
+        return (self.primes[-1], self.get(self.primes[-1]).norm2() / n2)
+```
+
+### 4.5 Kuramoto Model (`physics/kuramoto.py`)
+
+```python
+"""
+Kuramoto coupled oscillator model.
+"""
+from __future__ import annotations
+import numpy as np
+from numpy.typing import NDArray
+from dataclasses import dataclass
+
+
+@dataclass
+class KuramotoModel:
+    """dθ_i/dt = ω_i + (K/N) Σ sin(θ_j - θ_i)"""
+    
+    n_oscillators: int
+    coupling: float = 1.0
+    frequencies: NDArray | None = None
+    phases: NDArray | None = None
+    
+    def __post_init__(self):
+        if self.frequencies is None:
+            self.frequencies = np.random.normal(0, 1, self.n_oscillators)
+        if self.phases is None:
+            self.phases = np.random.uniform(0, 2*np.pi, self.n_oscillators)
+    
+    def step(self, dt: float):
+        phase_diff = self.phases[:, np.newaxis] - self.phases[np.newaxis, :]
+        coupling_term = np.mean(np.sin(phase_diff), axis=1)
+        self.phases += (self.frequencies + self.coupling * coupling_term) * dt
+        self.phases %= 2 * np.pi
+    
+    def order_parameter(self) -> complex:
+        return np.mean(np.exp(1j * self.phases))
+    
+    def synchronization(self) -> float:
+        return abs(self.order_parameter())
+```
+
+### 4.6 Resonant Fragment (`resonance/fragment.py`)
+
+```python
+"""
+Holographic memory fragment from ResoLang.
+"""
+from __future__ import annotations
+import numpy as np
+from typing import Dict, Tuple
+from sympy import isprime
+
+
+class ResonantFragment:
+    """Holographic memory field with prime coefficients."""
+    
+    def __init__(
+        self,
+        coeffs: Dict[int, float] | None = None,
+        center: Tuple[float, float] = (0.0, 0.0),
+        entropy: float = 0.0
+    ):
+        self.coeffs = coeffs or {}
+        self.center = center
+        self.entropy = entropy
+    
+    @classmethod
+    def encode(cls, pattern: str, spatial_entropy: float = 0.5) -> ResonantFragment:
+        """Encode string pattern into holographic memory."""
+        coeffs = {}
+        prime = 2
+        
+        for i, char in enumerate(pattern):
+            while not isprime(prime):
+                prime += 1
+            
+            # Holographic encoding: A_p * e^(-S) * e^(ipθ)
+            base_amp = ord(char) / 255.0
+            spatial_factor = np.exp(-spatial_entropy)
+            phase_factor = np.cos(prime * np.pi / 4)
+            coeffs[prime] = base_amp * spatial_factor * phase_factor
+            prime += 1
+        
+        # Normalize
+        total = np.sqrt(sum(a**2 for a in coeffs.values()))
+        if total > 0:
+            coeffs = {k: v/total for k, v in coeffs.items()}
+        
+        # Compute Shannon entropy
+        entropy = 0.0
+        for amp in coeffs.values():
+            p = amp ** 2
+            if p > 0:
+                entropy -= p * np.log(p)
+        
+        center = (len(pattern) / 2.0, total / len(pattern))
+        return cls(coeffs, center, entropy)
+    
+    def tensor(self, other: ResonantFragment) -> ResonantFragment:
+        """Tensor product: field interaction."""
+        new_coeffs = dict(self.coeffs)
+        for p, amp in other.coeffs.items():
+            new_coeffs[p] = new_coeffs.get(p, 0) + amp
+        
+        # Normalize
+        total = np.sqrt(sum(a**2 for a in new_coeffs.values()))
+        if total > 0:
+            new_coeffs = {k: v/total for k, v in new_coeffs.items()}
+        
+        # New center (weighted average)
+        total_entropy = self.entropy + other.entropy
+        if total_entropy > 0:
+            w1 = self.entropy / total_entropy
+            w2 = other.entropy / total_entropy
+        else:
+            w1 = w2 = 0.5
+        
+        center = (
+            self.center[0] * w1 + other.center[0] * w2,
+            self.center[1] * w1 + other.center[1] * w2
+        )
+        
+        return ResonantFragment(new_coeffs, center, self.entropy + other.entropy)
+    
+    def collapse(self) -> ResonantFragment:
+        """Probabilistic collapse to single prime."""
+        if not self.coeffs:
+            return self
+        
+        probs = {p: a**2 for p, a in self.coeffs.items()}
+        total = sum(probs.values())
+        
+        r = np.random.random() * total
+        cumulative = 0.0
+        selected = list(self.coeffs.keys())[0]
+        
+        for p, prob in probs.items():
+            cumulative += prob
+            if r < cumulative:
+                selected = p
+                break
+        
+        return ResonantFragment({selected: 1.0}, self.center, 0.0)
+```
+
+### 4.7 Prime Resonance Identity (`network/identity.py`)
+
+```python
+"""
+Prime Resonance Identity (PRI) for network nodes.
+"""
+from __future__ import annotations
+import numpy as np
+from dataclasses import dataclass
+from typing import Tuple
+
+
+@dataclass
+class PrimeResonanceIdentity:
+    """
+    PRI = (P_G, P_E, P_Q)
+    - P_G: Gaussian prime
+    - P_E: Eisenstein prime
+    - P_Q: Quaternionic prime
+    """
+    gaussian: int
+    eisenstein: int
+    quaternionic: int
+    
+    @classmethod
+    def random(cls) -> PrimeResonanceIdentity:
+        primes = [2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47]
+        return cls(
+            gaussian=np.random.choice(primes),
+            eisenstein=np.random.choice(primes),
+            quaternionic=np.random.choice(primes)
+        )
+    
+    @classmethod
+    def from_seed(cls, seed: int) -> PrimeResonanceIdentity:
+        rng = np.random.default_rng(seed)
+        primes = [2, 3, 5, 7, 11, 13, 17, 19, 23, 29, 31, 37, 41, 43, 47]
+        return cls(
+            gaussian=int(rng.choice(primes)),
+            eisenstein=int(rng.choice(primes)),
+            quaternionic=int(rng.choice(primes))
+        )
+    
+    @property
+    def signature(self) -> Tuple[int, int, int]:
+        return (self.gaussian, self.eisenstein, self.quaternionic)
+    
+    @property
+    def hash(self) -> int:
+        return (self.gaussian * self.eisenstein * self.quaternionic) % 1000000007
+    
+    def entanglement_strength(self, other: PrimeResonanceIdentity) -> float:
+        """Compute entanglement strength based on shared primes."""
+        sig1 = set(self.signature)
+        sig2 = set(other.signature)
+        shared = len(sig1 & sig2)
+        total = len(sig1 | sig2)
+        return (2 * shared) / total if total > 0 else 0.0
+
+
+@dataclass
+class EntangledNode:
+    """Network node with entanglement capabilities."""
+    pri: PrimeResonanceIdentity
+    coherence: float = 1.0
+    entropy: float = 0.0
+    
+    def can_entangle(self, other: EntangledNode, threshold: float = 0.3) -> bool:
+        strength = self.pri.entanglement_strength(other.pri)
+        return strength >= threshold
+    
+    def phase_difference(self, other: EntangledNode) -> float:
+        """Phase difference based on signature primes."""
+        s1 = self.pri.gaussian + self.pri.eisenstein
+        s2 = other.pri.gaussian + other.pri.eisenstein
+        return np.abs(np.sin((s1 - s2) * np.pi / 13))
+```
+
+---
+
+## 5. Machine Learning Primitives
+
+### 5.1 Sparse Prime State (`ml/sparse_state.py`)
+
+```python
+"""
+SparsePrimeState: H_Q = H_P ⊗ ℍ (Prime Hilbert space tensor quaternions)
+"""
+from __future__ import annotations
+import numpy as np
+from numpy.typing import NDArray
+from typing import Dict, List, Optional
+from ..core.quaternion import Quaternion
+
+
+class SparsePrimeState:
+    """Sparse representation of prime-quaternion tensor state."""
+    
+    def __init__(
+        self,
+        primes: List[int],
+        quaternions: Dict[int, Quaternion] | None = None
+    ):
+        self.primes = primes
+        self.quaternions = quaternions or {}
+        self._entropy_cache: Optional[float] = None
+    
+    @classmethod
+    def from_embedding(cls, embedding: NDArray, primes: List[int]) -> SparsePrimeState:
+        """Create from dense embedding vector."""
+        state = cls(primes)
+        dim = len(embedding) // 4
+        
+        for i, p in enumerate(primes[:dim]):
+            idx = i * 4
+            state.quaternions[p] = Quaternion(
+                w=float(embedding[idx]),
+                x=float(embedding[idx + 1]),
+                y=float(embedding[idx + 2]),
+                z=float(embedding[idx + 3])
+            )
+        
+        return state
+    
+    def to_dense(self, dim: int) -> NDArray:
+        """Convert to dense vector."""
+        result = np.zeros(dim * 4)
+        for i, p in enumerate(self.primes[:dim]):
+            if p in self.quaternions:
+                q = self.quaternions[p]
+                idx = i * 4
+                result[idx:idx+4] = [q.w, q.x, q.y, q.z]
+        return result
+    
+    def hamilton_compose(self, other: SparsePrimeState) -> SparsePrimeState:
+        """Quaternionic composition via Hamilton product."""
+        result = SparsePrimeState(list(set(self.primes) | set(other.primes)))
+        
+        for p in result.primes:
+            q1 = self.quaternions.get(p, Quaternion())
+            q2 = other.quaternions.get(p, Quaternion())
+            result.quaternions[p] = q1 * q2
+        
+        return result
+    
+    def coherence(self) -> float:
+        """Measure quaternionic coherence."""
+        if not self.quaternions:
+            return 0.0
+        
+        norms = [q.norm() for q in self.quaternions.values()]
+        total = sum(norms)
+        if total < 1e-10:
+            return 0.0
+        
+        weights = [n / total for n in norms]
+        avg_w = sum(w * q.w for w, q in zip(weights, self.quaternions.values()))
+        
+        return abs(avg_w)
+    
+    def entropy(self) -> float:
+        """State entropy."""
+        if self._entropy_cache is not None:
+            return self._entropy_cache
+        
+        norms = [q.norm() ** 2 for q in self.quaternions.values()]
+        total = sum(norms)
+        if total < 1e-10:
+            return 0.0
+        
+        probs = [n / total for n in norms]
+        entropy = -sum(p * np.log(p + 1e-10) for p in probs if p > 0)
+        self._entropy_cache = entropy
+        return entropy
+```
+
+### 5.2 Resonant Attention (`ml/attention.py`)
+
+```python
+"""
+Resonant attention mechanism with phase interference.
+"""
+from __future__ import annotations
+import numpy as np
+from numpy.typing import NDArray
+from typing import Tuple
+
+
+def golden_ratio() -> float:
+    return (1 + np.sqrt(5)) / 2
+
+
+def resonant_attention(
+    Q: NDArray,
+    K: NDArray,
+    V: NDArray,
+    prime_weights: NDArray,
+    temperature: float = 1.0
+) -> Tuple[NDArray, NDArray]:
+    """
+    Phase-interference attention:
+    A(Q, K) = softmax(QK^T / sqrt(d) + Phi_resonance)
+    """
+    d_k = Q.shape[-1]
+    
+    # Standard attention scores
+    scores = np.matmul(Q, np.swapaxes(K, -1, -2)) / np.sqrt(d_k)
+    
+    # Phase interference term
+    phi = golden_ratio()
+    seq_len = Q.shape[-2]
+    positions = np.arange(seq_len)
+    phase_matrix = np.outer(positions, positions) * phi
+    phase_term = np.cos(phase_matrix) * 0.1
+    
+    # Prime weight modulation
+    prime_mod = np.outer(prime_weights[:seq_len], prime_weights[:seq_len])
+    
+    # Combined attention
+    scores = scores + phase_term + prime_mod * 0.05
+    scores = scores / temperature
+    
+    # Softmax
+    exp_scores = np.exp(scores - np.max(scores, axis=-1, keepdims=True))
+    attention = exp_scores / np.sum(exp_scores, axis=-1, keepdims=True)
+    
+    # Output
+    output = np.matmul(attention, V)
+    
+    return output, attention
+```
+
+---
+
+## 6. Observer Architecture
+
+### 6.1 Sedenion Memory Field (`observer/smf.py`)
+
+```python
+"""
+Sedenion Memory Field for 16-dimensional holographic memory.
+"""
+from __future__ import annotations
+import numpy as np
+from numpy.typing import NDArray
+from dataclasses import dataclass
+from typing import List, Optional
+from ..core.hypercomplex import Hypercomplex
+
+
+@dataclass
+class MemoryMoment:
+    """Single moment in SMF."""
+    sedenion: Hypercomplex
+    timestamp: float
+    entropy: float
+    coherence: float
+
+
+class SedenionMemoryField:
+    """16-dimensional holographic memory using sedenions."""
+    
+    DIM = 16
+    
+    def __init__(self, decay_rate: float = 0.01, max_moments: int = 1000):
+        self.decay_rate = decay_rate
+        self.max_moments = max_moments
+        self.moments: List[MemoryMoment] = []
+        self.current_time = 0.0
+    
+    def encode(self, content: str, importance: float = 1.0) -> MemoryMoment:
+        """Encode content into sedenion memory."""
+        components = np.zeros(self.DIM)
+        for i, char in enumerate(content[:self.DIM]):
+            components[i] = (ord(char) - 64) / 64.0 * importance
+        
+        norm = np.linalg.norm(components)
+        if norm > 0:
+            components = components / norm
+        
+        sedenion = Hypercomplex(self.DIM, components)
+        entropy = sedenion.entropy()
+        coherence = 1.0 / (1.0 + entropy)
+        
+        moment = MemoryMoment(
+            sedenion=sedenion,
+            timestamp=self.current_time,
+            entropy=entropy,
+            coherence=coherence
+        )
+        
+        self.moments.append(moment)
+        self._prune_old_memories()
+        
+        return moment
+    
+    def recall(self, query: str, top_k: int = 5) -> List[MemoryMoment]:
+        """Recall memories similar to query."""
+        query_sed = self._string_to_sedenion(query)
+        
+        similarities = []
+        for moment in self.moments:
+            sim = np.dot(query_sed.c, moment.sedenion.c)
+            age = self.current_time - moment.timestamp
+            decay = np.exp(-self.decay_rate * age)
+            boosted_sim = sim * decay * moment.coherence
+            similarities.append((boosted_sim, moment))
+        
+        similarities.sort(key=lambda x: -x[0])
+        return [m for _, m in similarities[:top_k]]
+    
+    def _string_to_sedenion(self, s: str) -> Hypercomplex:
+        components = np.zeros(self.DIM)
+        for i, char in enumerate(s[:self.DIM]):
+            components[i] = (ord(char) - 64) / 64.0
+        norm = np.linalg.norm(components)
+        if norm > 0:
+            components = components / norm
+        return Hypercomplex(self.DIM, components)
+    
+    def _prune_old_memories(self):
+        if len(self.moments) > self.max_moments:
+            self.moments.sort(key=lambda m: (-m.coherence, -m.timestamp))
+            self.moments = self.moments[:self.max_moments]
+    
+    def step(self, dt: float = 1.0):
+        """Advance time."""
+        self.current_time += dt
+```
+
+### 6.2 Prime Resonance Semantic Coherence (`observer/prsc.py`)
+
+```python
+"""
+PRSC: Prime Resonance Semantic Coherence layer.
+"""
+from __future__ import annotations
+import numpy as np
+from dataclasses import dataclass
+from typing import List, Dict, Tuple
+from ..hilbert.state import PrimeState
+from ..core.complex import Complex
+
+
+@dataclass
+class SemanticBinding:
+    """Binding between prime state and semantic concept."""
+    prime_state: PrimeState
+    concept: str
+    strength: float
+    coherence: float
+
+
+class PRSC:
+    """Prime Resonance Semantic Coherence."""
+    
+    def __init__(self, coherence_threshold: float = 0.7):
+        self.bindings: Dict[str, SemanticBinding] = {}
+        self.coherence_threshold = coherence_threshold
+        self.global_coherence = 1.0
+    
+    def bind(self, concept: str, state: PrimeState) -> SemanticBinding:
+        """Bind concept to prime state."""
+        coherence = self._compute_coherence(state)
+        binding = SemanticBinding(
+            prime_state=state,
+            concept=concept,
+            strength=1.0,
+            coherence=coherence
+        )
+        self.bindings[concept] = binding
+        self._update_global_coherence()
+        return binding
+    
+    def compose(self, concepts: List[str]) -> PrimeState:
+        """Compose multiple concepts into unified state."""
+        if not concepts:
+            return PrimeState.uniform()
+        
+        result = self.bindings.get(concepts[0])
+        if not result:
+            return PrimeState.uniform()
+        
+        state = PrimeState()
+        for p, amp in result.prime_state.amplitudes.items():
+            state.amplitudes[p] = amp
+        
+        for concept in concepts[1:]:
+            binding = self.bindings.get(concept)
+            if binding:
+                for p, amp in binding.prime_state.amplitudes.items():
+                    current = state.get(p)
+                    new_amp = Complex(
+                        re=current.re + amp.re * binding.strength,
+                        im=current.im + amp.im * binding.strength
+                    )
+                    state.amplitudes[p] = new_amp
+        
+        return state.normalize()
+    
+    def _compute_coherence(self, state: PrimeState) -> float:
+        entropy = state.entropy()
+        max_entropy = np.log2(len(state.primes))
+        return 1.0 - (entropy / max_entropy) if max_entropy > 0 else 1.0
+    
+    def _update_global_coherence(self):
+        if not self.bindings:
+            self.global_coherence = 1.0
+            return
+        coherences = [b.coherence for b in self.bindings.values()]
+        self.global_coherence = np.mean(coherences)
+```
+
+---
+
+## 7. Runtime Engine (`runtime/engine.py`)
+
+```python
+"""
+Main execution engine for ResoAleph.
+"""
+from __future__ import annotations
+import asyncio
+from typing import Any, Dict, List, Optional, Callable
+from dataclasses import dataclass, field
+from ..hilbert.state import PrimeState
+from ..observer.smf import SedenionMemoryField
+from ..observer.prsc import PRSC
+
+
+@dataclass
+class EngineConfig:
+    """Engine configuration."""
+    coherence_threshold: float = 0.7
+    entropy_threshold: float = 2.0
+    max_iterations: int = 100
+    memory_decay: float = 0.01
+
+
+@dataclass
+class EngineState:
+    """Current engine state."""
+    iteration: int = 0
+    coherence: float = 1.0
+    entropy: float = 0.0
+    halted: bool = False
+    prime_state: Optional[PrimeState] = None
+
+
+class AlephEngine:
+    """Main execution engine for prime resonance computing."""
+    
+    def __init__(self, config: Optional[EngineConfig] = None):
+        self.config = config or EngineConfig()
+        self.state = EngineState()
+        self.smf = SedenionMemoryField(decay_rate=self.config.memory_decay)
+        self.prsc = PRSC(coherence_threshold=self.config.coherence_threshold)
+        self.hooks: Dict[str, List[Callable]] = {
+            'pre_step': [], 'post_step': [], 'on_halt': [], 'on_collapse': []
+        }
+    
+    def register_hook(self, event: str, callback: Callable):
+        if event in self.hooks:
+            self.hooks[event].append(callback)
+    
+    async def step(self) -> EngineState:
+        for cb in self.hooks.get('pre_step', []):
+            cb(self, state=self.state)
+        
+        if self.state.coherence < self.config.coherence_threshold:
+            self.state.halted = True
+            return self.state
+        
+        if self.state.entropy > self.config.entropy_threshold:
+            self.state.halted = True
+            return self.state
+        
+        if self.state.iteration >= self.config.max_iterations:
+            self.state.halted = True
+            return self.state
+        
+        if self.state.prime_state:
+            self.state.entropy = self.state.prime_state.entropy()
+        
+        self.smf.step()
+        self.state.coherence = self.prsc.global_coherence
+        self.state.iteration += 1
+        
+        for cb in self.hooks.get('post_step', []):
+            cb(self, state=self.state)
+        
+        return self.state
+    
+    async def run(self, initial_state: Optional[PrimeState] = None) -> EngineState:
+        self.state = EngineState(prime_state=initial_state or PrimeState.uniform())
+        while not self.state.halted:
+            await self.step()
+        return self.state
+    
+    def bind_concept(self, concept: str, state: PrimeState):
+        return self.prsc.bind(concept, state)
+    
+    def compose_concepts(self, concepts: List[str]) -> PrimeState:
+        return self.prsc.compose(concepts)
+```
+
+---
+
+## 8. Usage Examples
+
+### 8.1 Basic Prime State Operations
+
+```python
+from resoaleph.hilbert import PrimeState
+
+# Create uniform superposition
+state = PrimeState.uniform()
+print(f"Entropy: {state.entropy():.4f}")
+
+# Create from composite number
+state_120 = PrimeState.composite(120)  # 2^3 * 3 * 5
+print(f"120 decomposition entropy: {state_120.entropy():.4f}")
+
+# Measure (Born collapse)
+prime, probability = state.measure()
+print(f"Measured prime {prime} with probability {probability:.4f}")
+```
+
+### 8.2 Kuramoto Synchronization
+
+```python
+from resoaleph.physics import KuramotoModel
+
+model = KuramotoModel(n_oscillators=100, coupling=2.0)
+
+for _ in range(1000):
+    model.step(dt=0.01)
+
+sync = model.synchronization()
+print(f"Synchronization: {sync:.4f}")
+```
+
+### 8.3 Holographic Memory
+
+```python
+from resoaleph.resonance import ResonantFragment
+
+frag1 = ResonantFragment.encode("quantum computing", spatial_entropy=0.3)
+frag2 = ResonantFragment.encode("prime numbers", spatial_entropy=0.3)
+
+combined = frag1.tensor(frag2)
+print(f"Combined entropy: {combined.entropy:.4f}")
+
+collapsed = combined.collapse()
+print(f"Collapsed to prime: {list(collapsed.coeffs.keys())[0]}")
+```
+
+### 8.4 Full Engine Workflow
+
+```python
+import asyncio
+from resoaleph.runtime import AlephEngine, EngineConfig
+from resoaleph.hilbert import PrimeState
+
+async def main():
+    config = EngineConfig(coherence_threshold=0.5, max_iterations=50)
+    engine = AlephEngine(config)
+    
+    engine.bind_concept("computation", PrimeState.composite(30))
+    engine.bind_concept("meaning", PrimeState.composite(42))
+    
+    composed = engine.compose_concepts(["computation", "meaning"])
+    final_state = await engine.run(composed)
+    
+    print(f"Final coherence: {final_state.coherence:.4f}")
+    print(f"Iterations: {final_state.iteration}")
+
+asyncio.run(main())
+```
+
+---
+
+## 9. Performance Optimization
+
+### 9.1 NumPy Vectorization
+
+All core operations use NumPy for vectorized computation:
+
+```python
+# Vectorized phase computation
+phases = np.exp(1j * np.array([p * theta for p in primes]))
+
+# Vectorized norm computation
+norms = np.sqrt(np.sum(components ** 2, axis=-1))
+```
+
+### 9.2 JAX GPU Acceleration
+
+Optional JAX backend for GPU computation:
+
+```python
+import jax.numpy as jnp
+from jax import jit, vmap
+
+@jit
+def kuramoto_step_gpu(phases, frequencies, coupling, dt):
+    phase_diff = phases[:, None] - phases[None, :]
+    coupling_term = jnp.mean(jnp.sin(phase_diff), axis=1)
+    return (phases + (frequencies + coupling * coupling_term) * dt) % (2 * jnp.pi)
+```
+
+### 9.3 Caching Strategy
+
+```python
+from functools import lru_cache
+
+@lru_cache(maxsize=1024)
+def prime_factorization(n: int) -> Dict[int, int]:
+    return dict(factorint(n))
+```
+
+---
+
+## 10. Testing Strategy
+
+### 10.1 Unit Tests
+
+```python
+import pytest
+from resoaleph.hilbert import PrimeState
+
+class TestPrimeState:
+    def test_normalization(self):
+        state = PrimeState.uniform()
+        assert abs(state.norm() - 1.0) < 1e-10
+    
+    def test_entropy_bounds(self):
+        pure = PrimeState.basis(2)
+        assert pure.entropy() < 0.1
+        
+        uniform = PrimeState.uniform()
+        assert uniform.entropy() > 2.0
+```
+
+### 10.2 Property-Based Tests
+
+```python
+from hypothesis import given, strategies as st
+from resoaleph.core import Quaternion
+
+@given(st.floats(-100, 100), st.floats(-100, 100),
+       st.floats(-100, 100), st.floats(-100, 100))
+def test_quaternion_norm_non_negative(w, x, y, z):
+    q = Quaternion(w=w, x=x, y=y, z=z)
+    assert q.norm() >= 0
+```
+
+---
+
+## 11. Roadmap
+
+### Phase 1: Core Implementation (Months 1-2)
+- [ ] Core mathematical primitives (complex, quaternion, hypercomplex)
+- [ ] Prime Hilbert space implementation
+- [ ] Kuramoto physics module
+- [ ] Basic resonant fragment
+
+### Phase 2: ML Primitives (Months 2-3)
+- [ ] SparsePrimeState
+- [ ] Resonant attention mechanism
+- [ ] Coherence-gated halting
+- [ ] PyTorch integration
+
+### Phase 3: Observer & Network (Months 3-4)
+- [ ] Sedenion Memory Field
+- [ ] PRSC layer
+- [ ] Entangled nodes
+- [ ] Network protocols
+
+### Phase 4: Production Hardening (Months 4-5)
+- [ ] GPU acceleration (JAX/CuPy)
+- [ ] Distributed computing (Ray)
+- [ ] Performance optimization
+- [ ] Documentation & examples
+
+---
+
+## 12. Conclusion
+
+**ResoAleph** unifies the mathematical foundations of TinyAleph and ResoLang into a cohesive Python library that enables:
+
+1. **Prime-based semantic computing** - Encode meaning in prime factorization structures
+2. **Hypercomplex neural networks** - Leverage quaternion/sedenion algebra for richer representations
+3. **Entropy-driven reasoning** - Use thermodynamic principles to guide computation
+4. **Distributed entanglement** - Build networks of resonantly-coupled nodes
+
+The library leverages best-in-class Python libraries (NumPy, SciPy, SymPy, JAX, PyTorch) while maintaining a clean, type-safe API suitable for both research and production use.