@aionlabsai/aion 0.2.11 → 0.2.13

package/dist/cli/commands/eval.d.ts

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+import type { Command } from 'commander';
+export declare function registerEval(program: Command): void;
+//# sourceMappingURL=eval.d.ts.map

package/dist/cli/commands/eval.d.ts.map

@@ -0,0 +1 @@
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package/dist/cli/commands/eval.js

@@ -0,0 +1,160 @@
+import chalk from 'chalk';
+import ora from 'ora';
+import { existsSync, mkdirSync, readFileSync, writeFileSync } from 'fs';
+import { join } from 'path';
+import { embedTextRemote, embedText } from '../../infra/embeddings.js';
+import { createVectorStore } from '../../infra/vector-store.js';
+import { rerankWithLLM, rerankLocal } from '../../infra/reranker.js';
+import { BM25Index, rrfScore } from '../../infra/bm25.js';
+function loadGoldenSet(path) {
+    try {
+        return JSON.parse(readFileSync(path, 'utf8'));
+    }
+    catch {
+        return null;
+    }
+}
+function scaffoldGoldenSet(path) {
+    mkdirSync(join(path, '..'), { recursive: true });
+    const example = {
+        queries: [
+            { query: 'embedding vector similarity', expected: ['src/infra/embeddings.ts'], note: 'example — edit expected files' },
+            { query: 'BM25 ranking score', expected: ['src/infra/bm25.ts'] },
+            { query: 'audit pipeline scanner agents', expected: ['src/core/pipelines/audit-pipeline.ts'] },
+        ],
+    };
+    writeFileSync(path, JSON.stringify(example, null, 2), 'utf8');
+}
+export function registerEval(program) {
+    const evalCmd = program
+        .command('eval')
+        .description('Evaluate retrieval quality and agent output quality');
+    // ── aion eval retrieval ───────────────────────────────────────────────────
+    evalCmd
+        .command('retrieval')
+        .description('Measure recall@3, recall@5, MRR of memory search against a golden set')
+        .option('--rerank <mode>', 'none | local | llm — apply re-ranking after retrieval (default: none)', 'none')
+        .option('--top-k <n>', 'candidates to retrieve before re-ranking', '10')
+        .option('--scaffold', 'create example golden set at .ai-memory/eval/retrieval.json and exit')
+        .option('--json', 'output results as JSON')
+        .action(async (options) => {
+        const cwd = process.cwd();
+        const goldenPath = join(cwd, '.ai-memory', 'eval', 'retrieval.json');
+        if (options.scaffold) {
+            scaffoldGoldenSet(goldenPath);
+            console.log(chalk.green(`Created: ${goldenPath}`));
+            console.log(chalk.gray('Edit the file with your project-specific queries and expected files, then run `aion eval retrieval`.'));
+            return;
+        }
+        if (!existsSync(goldenPath)) {
+            console.error(chalk.yellow(`No golden set found at ${goldenPath}`));
+            console.error(chalk.gray('Run `aion eval retrieval --scaffold` to create an example.'));
+            process.exit(1);
+        }
+        const golden = loadGoldenSet(goldenPath);
+        if (!golden || golden.queries.length === 0) {
+            console.error(chalk.red('Golden set is empty or invalid.'));
+            process.exit(1);
+        }
+        const topK = Math.max(5, parseInt(options.topK, 10) || 10);
+        const spinner = ora(`Evaluating ${golden.queries.length} queries (rerank: ${options.rerank})...`).start();
+        const vectorStore = createVectorStore(cwd);
+        if (vectorStore.size() === 0) {
+            spinner.fail(chalk.yellow('No vector index. Run `aion memory build` first.'));
+            process.exit(1);
+        }
+        const results = [];
+        for (const { query, expected } of golden.queries) {
+            // 1. Embed query
+            const remote = await embedTextRemote(query);
+            const queryVec = remote ? remote : Array.from(embedText(query, 500));
+            // 2. Vector search → top-K candidates
+            const vecResults = await vectorStore.search(queryVec, topK);
+            // 3. BM25 over the same candidates (in-memory)
+            const bm25 = new BM25Index();
+            for (const r of vecResults) {
+                bm25.add(r.id, String(r.payload['preview'] ?? r.id));
+            }
+            const bm25Results = bm25.score(query);
+            // 4. RRF fusion
+            const fused = rrfScore(vecResults.map((r, i) => ({ id: r.id, score: vecResults.length - i })), bm25Results);
+            // 5. Optional re-ranking
+            let finalIds;
+            if (options.rerank === 'llm') {
+                const candidates = fused.slice(0, topK).map((r) => {
+                    const hit = vecResults.find((v) => v.id === r.id);
+                    return { id: r.id, content: String(hit?.payload['preview'] ?? r.id) };
+                });
+                const reranked = await rerankWithLLM(query, candidates, 5);
+                finalIds = reranked.map((r) => r.id);
+            }
+            else if (options.rerank === 'local') {
+                const candidates = fused.slice(0, topK).map((r) => {
+                    const hit = vecResults.find((v) => v.id === r.id);
+                    return { id: r.id, content: String(hit?.payload['preview'] ?? r.id) };
+                });
+                finalIds = rerankLocal(query, candidates, 5).map((r) => r.id);
+            }
+            else {
+                finalIds = fused.slice(0, 5).map((r) => r.id);
+            }
+            // 6. Score: match by file path substring
+            const matchesExpected = (id) => expected.some((exp) => id.includes(exp) || exp.includes(id.split(':')[0] ?? ''));
+            const rankOfFirst = finalIds.findIndex(matchesExpected);
+            results.push({
+                query,
+                expected,
+                retrieved: finalIds,
+                hitAt3: rankOfFirst >= 0 && rankOfFirst < 3,
+                hitAt5: rankOfFirst >= 0 && rankOfFirst < 5,
+                rr: rankOfFirst >= 0 ? 1 / (rankOfFirst + 1) : 0,
+            });
+        }
+        spinner.stop();
+        const n = results.length;
+        const recall3 = results.filter((r) => r.hitAt3).length / n;
+        const recall5 = results.filter((r) => r.hitAt5).length / n;
+        const mrr = results.reduce((s, r) => s + r.rr, 0) / n;
+        const { embeddingProvider } = await import('../../infra/embeddings.js');
+        const { vectorStoreBackend } = await import('../../infra/vector-store.js');
+        const report = {
+            provider: embeddingProvider(),
+            backend: vectorStoreBackend(),
+            rerankMode: options.rerank,
+            queries: n,
+            recall3: Math.round(recall3 * 1000) / 1000,
+            recall5: Math.round(recall5 * 1000) / 1000,
+            mrr: Math.round(mrr * 1000) / 1000,
+            results,
+            ranAt: new Date().toISOString(),
+        };
+        if (options.json) {
+            console.log(JSON.stringify(report, null, 2));
+            return;
+        }
+        // Human-readable output
+        console.log(chalk.bold(`\nRetrieval Evaluation — ${n} queries\n`));
+        console.log(`  Provider:  ${chalk.cyan(report.provider)}`);
+        console.log(`  Backend:   ${chalk.cyan(report.backend)}`);
+        console.log(`  Re-rank:   ${chalk.cyan(options.rerank)}\n`);
+        const pct = (v) => chalk.bold(`${(v * 100).toFixed(1)}%`);
+        console.log(`  recall@3   ${pct(recall3)}`);
+        console.log(`  recall@5   ${pct(recall5)}`);
+        console.log(`  MRR        ${pct(mrr)}\n`);
+        for (const r of results) {
+            const status = r.hitAt3 ? chalk.green('✓') : r.hitAt5 ? chalk.yellow('~') : chalk.red('✗');
+            console.log(`  ${status}  ${chalk.gray(r.query.slice(0, 60))}`);
+            if (!r.hitAt5) {
+                console.log(chalk.gray(`       expected: ${r.expected.join(', ')}`));
+                console.log(chalk.gray(`       got:      ${r.retrieved.slice(0, 3).join(', ')}`));
+            }
+        }
+        // Save report
+        const outDir = join(cwd, '.ai-runtime', 'eval');
+        mkdirSync(outDir, { recursive: true });
+        const outPath = join(outDir, `retrieval-${Date.now()}.json`);
+        writeFileSync(outPath, JSON.stringify(report, null, 2), 'utf8');
+        console.log(chalk.gray(`\n  Report saved: ${outPath}`));
+    });
+}
+//# sourceMappingURL=eval.js.map

package/dist/cli/commands/eval.js.map

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package/dist/cli/commands/memory.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/memory.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAYzC,wBAAgB,cAAc,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAuMrD"}
+{"version":3,"file":"memory.d.ts","sourceRoot":"","sources":["../../../src/cli/commands/memory.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAczC,wBAAgB,cAAc,CAAC,OAAO,EAAE,OAAO,GAAG,IAAI,CAuPrD"}

package/dist/cli/commands/memory.js

@@ -4,6 +4,8 @@ import { writeFileSync, mkdirSync } from 'fs';
 import { join, relative } from 'path';
 import { KnowledgeStore } from '../../infra/knowledge.js';
 import { chunkFile } from '../../infra/chunker.js';
+import { embedBatch, embeddingProvider } from '../../infra/embeddings.js';
+import { createVectorStore, vectorStoreBackend } from '../../infra/vector-store.js';
 import { buildDepGraph, formatDepReport } from '../../infra/dep-graph.js';
 import { buildRepoIndex, writeRepoIndex } from '../../infra/repo-index.js';
 import { formatRepoQuery, loadRepoIndex, queryRepoIndex } from '../../infra/repo-query.js';
@@ -21,38 +23,60 @@ export function registerMemory(program) {
         .action(async (options) => {
         const cwd = process.cwd();
         const store = new KnowledgeStore(cwd);
-        const spinner = ora('Building embedding index...').start();
+        const provider = embeddingProvider();
+        const backend = vectorStoreBackend();
+        const spinner = ora(`Building index [${provider}] → ${backend}`).start();
         try {
-            // 1. Index .ai-memory/ entries (bugs, decisions, patterns, etc.)
+            // 1. Index .ai-memory/ markdown entries
             const knowledgeCount = await store.embeddings.buildIndex([
                 'architecture', 'bugs', 'features', 'decisions', 'patterns',
             ]);
             let srcCount = 0;
             if (options.src !== false) {
-                // 2. Index source code via Tree-sitter chunks
+                // 2. Chunk source files and embed into VectorStore (separate from .ai-memory/)
                 const srcTarget = options.srcDir ?? '.';
                 const stats = collectAuditStats(cwd, srcTarget);
                 const files = stats.auditFiles.map((f) => join(cwd, f));
                 spinner.text = `Chunking ${files.length} source files...`;
-                const srcMemoryDir = join(cwd, '.ai-memory', 'architecture');
-                mkdirSync(srcMemoryDir, { recursive: true });
+                // Collect all chunks first for batch embedding
+                const allChunks = [];
                 for (const file of files) {
                     const chunks = await chunkFile(file, 1200);
+                    const relPath = relative(cwd, file);
                     for (const chunk of chunks) {
-                        const relPath = relative(cwd, file);
-                        const slug = `${relPath.replace(/[/\\]/g, '__')}__${chunk.name}`.replace(/[^a-z0-9_-]/gi, '_').slice(0, 80);
-                        const content = `\`\`\`\n// ${relPath}:${chunk.startLine}-${chunk.endLine} [${chunk.type}: ${chunk.name}]\n${chunk.text}\n\`\`\``;
-                        const outPath = join(srcMemoryDir, `src__${slug}.md`);
-                        writeFileSync(outPath, `# ${chunk.name} (${relPath}:${chunk.startLine})\n\n${content}\n`, 'utf8');
-                        srcCount++;
+                        const id = `${relPath}:${chunk.startLine}:${chunk.name}`;
+                        const content = `// ${relPath}:${chunk.startLine}-${chunk.endLine} [${chunk.type}: ${chunk.name}]\n${chunk.text}`;
+                        allChunks.push({ id, content, file: relPath, name: chunk.name, startLine: chunk.startLine, endLine: chunk.endLine });
                     }
-                    spinner.text = `Chunked ${srcCount} chunks from ${files.indexOf(file) + 1}/${files.length} files...`;
                 }
-                // Re-index now that source chunks are written
+                srcCount = allChunks.length;
+                spinner.text = `Embedding ${srcCount} chunks via ${provider}...`;
+                // Batch embed all chunks (efficient: one API call per 128 chunks for Voyage)
+                const vectorStore = createVectorStore(cwd);
+                const texts = allChunks.map((c) => c.content);
+                const vectors = await embedBatch(texts);
+                spinner.text = `Saving ${srcCount} chunks to ${backend}...`;
+                for (let i = 0; i < allChunks.length; i++) {
+                    const c = allChunks[i];
+                    await vectorStore.upsert(c.id, vectors[i], {
+                        file: c.file, name: c.name, startLine: c.startLine, endLine: c.endLine,
+                        preview: c.content.slice(0, 200),
+                    });
+                }
+                // Also write chunks to .ai-memory/architecture/ for backward compat with EmbeddingStore
+                const srcMemoryDir = join(cwd, '.ai-memory', 'architecture');
+                mkdirSync(srcMemoryDir, { recursive: true });
+                for (const chunk of allChunks) {
+                    const slug = `${chunk.file.replace(/[/\\]/g, '__')}__${chunk.name}`.replace(/[^a-z0-9_-]/gi, '_').slice(0, 80);
+                    const outPath = join(srcMemoryDir, `src__${slug}.md`);
+                    writeFileSync(outPath, `# ${chunk.name} (${chunk.file}:${chunk.startLine})\n\n\`\`\`\n${chunk.content}\n\`\`\`\n`, 'utf8');
+                }
                 await store.embeddings.buildIndex(['architecture']);
             }
             spinner.succeed(chalk.green(`Indexed ${knowledgeCount} knowledge entries + ${srcCount} source chunks`));
-            console.log(chalk.gray('Run `ai memory search "<query>"` to test retrieval.'));
+            console.log(chalk.gray(`  Provider: ${provider}`));
+            console.log(chalk.gray(`  Backend:  ${backend}`));
+            console.log(chalk.gray('  Run `aion memory search "<query>"` to test retrieval.'));
         }
         catch (err) {
             spinner.fail(chalk.red('Build failed: ' + String(err)));
@@ -62,28 +86,57 @@ export function registerMemory(program) {
     // ── ai memory search ──────────────────────────────────────────────────────
     memory
         .command('search <query>')
-        .description('Semantic search over the .ai-memory knowledge base')
+        .description('Semantic search over source code chunks and .ai-memory knowledge base')
         .option('-k, --top-k <n>', 'number of results', '5')
+        .option('--knowledge', 'search .ai-memory/ markdown only (skip source code chunks)')
         .action(async (query, options) => {
-        const store = new KnowledgeStore(process.cwd());
-        if (!store.embeddings.hasIndex()) {
-            console.error(chalk.yellow('No embedding index found. Run `ai memory build` first.'));
-            process.exit(1);
-        }
+        const cwd = process.cwd();
+        const store = new KnowledgeStore(cwd);
+        const topK = Math.max(1, parseInt(options.topK, 10) || 5);
         const spinner = ora('Searching...').start();
         try {
-            const topK = Math.max(1, parseInt(options.topK, 10) || 5);
-            const results = await store.embeddings.query(query, topK);
+            if (options.knowledge) {
+                // Knowledge-only: search .ai-memory/ markdown entries
+                if (!store.embeddings.hasIndex()) {
+                    spinner.fail(chalk.yellow('No embedding index. Run `aion memory build` first.'));
+                    process.exit(1);
+                }
+                const results = await store.embeddings.query(query, topK);
+                spinner.stop();
+                if (results.length === 0) {
+                    console.log(chalk.gray('No results.'));
+                    return;
+                }
+                console.log(chalk.bold(`\nTop ${results.length} results for: "${query}"\n`));
+                for (const r of results) {
+                    console.log(`${chalk.cyan(`${(r.score * 100).toFixed(1)}%`)}  ${chalk.bold(r.category + '/' + r.filename)}`);
+                    console.log(chalk.gray('  ' + r.text.split('\n')[0]?.slice(0, 100)));
+                    console.log();
+                }
+                return;
+            }
+            // Default: search VectorStore (source code chunks) using real embeddings
+            const { embedTextRemote, embedText } = await import('../../infra/embeddings.js');
+            const { createVectorStore: cvs } = await import('../../infra/vector-store.js');
+            const vectorStore = cvs(cwd);
+            if (vectorStore.size() === 0) {
+                spinner.fail(chalk.yellow('No source code index. Run `aion memory build` first.'));
+                process.exit(1);
+            }
+            const remote = await embedTextRemote(query);
+            const queryVec = remote ? remote : Array.from(embedText(query, 500));
+            const results = await vectorStore.search(queryVec, topK);
             spinner.stop();
             if (results.length === 0) {
-                console.log(chalk.gray('No results found.'));
+                console.log(chalk.gray('No results.'));
                 return;
             }
-            console.log(chalk.bold(`\nTop ${results.length} results for: "${query}"\n`));
+            console.log(chalk.bold(`\nTop ${results.length} source chunks for: "${query}"\n`));
             for (const r of results) {
                 const score = chalk.cyan(`${(r.score * 100).toFixed(1)}%`);
-                console.log(`${score}  ${chalk.bold(r.category + '/' + r.filename)}`);
-                console.log(chalk.gray('  ' + r.text.split('\n')[0]?.slice(0, 100)));
+                const loc = `${r.payload['file']}:${r.payload['startLine']}`;
+                console.log(`${score}  ${chalk.bold(String(r.payload['name']))}  ${chalk.gray(loc)}`);
+                console.log(chalk.gray('  ' + String(r.payload['preview'] ?? '').split('\n')[1]?.slice(0, 100)));
                 console.log();
             }
         }

package/dist/cli/commands/memory.js.map

@@ -1 +1 @@
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package/dist/index.js

@@ -25,6 +25,7 @@ import { registerSearch } from './cli/commands/search.js';
 import { registerTree } from './cli/commands/tree.js';
 import { registerNext } from './cli/commands/next.js';
 import { registerCi } from './cli/commands/ci.js';
+import { registerEval } from './cli/commands/eval.js';
 import { runNaturalLanguage } from './cli/interactive.js';
 import { runMenu } from './cli/menu.js';
 runMigrations();
@@ -84,6 +85,7 @@ registerSearch(program);
 registerTree(program);
 registerNext(program);
 registerCi(program);
+registerEval(program);
 // Explicit menu command
 program
     .command('menu')

package/dist/index.js.map

@@ -1 +1 @@
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package/dist/infra/bm25.d.ts

@@ -27,4 +27,17 @@ export declare function hybridScore(bm25Scores: Array<{
     id: string;
     score: number;
 }>;
+/**
+ * Reciprocal Rank Fusion — more robust than weighted sum.
+ * Works regardless of score scale differences between BM25 and vector scores.
+ * Each result at rank i contributes 1/(k+i+1) to its final score.
+ * k=60 is the standard constant from the original RRF paper (Cormack 2009).
+ */
+export declare function rrfScore(...rankings: Array<Array<{
+    id: string;
+    score: number;
+}>>): Array<{
+    id: string;
+    score: number;
+}>;
 //# sourceMappingURL=bm25.d.ts.map

package/dist/infra/bm25.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"bm25.d.ts","sourceRoot":"","sources":["../../src/infra/bm25.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAkBH,qBAAa,SAAS;IACpB,OAAO,CAAC,IAAI,CAAiB;IAC7B,OAAO,CAAC,EAAE,CAAkC;IAC5C,OAAO,CAAC,MAAM,CAAK;IAEnB,GAAG,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI;IAcnC,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;CAoB3D;AAED;;;GAGG;AACH,wBAAgB,WAAW,CACzB,UAAU,EAAE,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,EAChD,YAAY,EAAE,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,EAClD,KAAK,SAAM,GACV,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAgBtC"}
+{"version":3,"file":"bm25.d.ts","sourceRoot":"","sources":["../../src/infra/bm25.ts"],"names":[],"mappings":"AAAA;;;;GAIG;AAkBH,qBAAa,SAAS;IACpB,OAAO,CAAC,IAAI,CAAiB;IAC7B,OAAO,CAAC,EAAE,CAAkC;IAC5C,OAAO,CAAC,MAAM,CAAK;IAEnB,GAAG,CAAC,EAAE,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,GAAG,IAAI;IAcnC,KAAK,CAAC,KAAK,EAAE,MAAM,GAAG,KAAK,CAAC;QAAE,EAAE,EAAE,MAAM,CAAC;QAAC,KAAK,EAAE,MAAM,CAAA;KAAE,CAAC;CAoB3D;AAED;;;GAGG;AACH,wBAAgB,WAAW,CACzB,UAAU,EAAE,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,EAChD,YAAY,EAAE,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,EAClD,KAAK,SAAM,GACV,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAgBtC;AAED;;;;;GAKG;AACH,wBAAgB,QAAQ,CACtB,GAAG,QAAQ,EAAE,KAAK,CAAC,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAAC,GACvD,KAAK,CAAC;IAAE,EAAE,EAAE,MAAM,CAAC;IAAC,KAAK,EAAE,MAAM,CAAA;CAAE,CAAC,CAWtC"}

package/dist/infra/bm25.js

@@ -66,4 +66,22 @@ export function hybridScore(bm25Scores, vectorScores, alpha = 0.5) {
     }
     return combined.sort((a, b) => b.score - a.score);
 }
+/**
+ * Reciprocal Rank Fusion — more robust than weighted sum.
+ * Works regardless of score scale differences between BM25 and vector scores.
+ * Each result at rank i contributes 1/(k+i+1) to its final score.
+ * k=60 is the standard constant from the original RRF paper (Cormack 2009).
+ */
+export function rrfScore(...rankings) {
+    const K = 60;
+    const scores = new Map();
+    for (const ranking of rankings) {
+        ranking.forEach((r, i) => {
+            scores.set(r.id, (scores.get(r.id) ?? 0) + 1 / (K + i + 1));
+        });
+    }
+    return [...scores.entries()]
+        .map(([id, score]) => ({ id, score }))
+        .sort((a, b) => b.score - a.score);
+}
 //# sourceMappingURL=bm25.js.map

package/dist/infra/bm25.js.map

@@ -1 +1 @@
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package/dist/infra/embeddings.d.ts

@@ -1,4 +1,7 @@
 export declare function embedText(text: string, maxChars: number): Float32Array;
+export declare function embeddingProvider(): string;
+export declare function embedTextRemote(text: string): Promise<number[] | null>;
+export declare function embedBatch(texts: string[]): Promise<number[][]>;
 export declare function cosineSimilarity(a: Float32Array, b: Float32Array): number;
 export interface EmbeddedEntry {
     category: string;
@@ -18,4 +21,5 @@ export declare class EmbeddingStore {
     hasIndex(): boolean;
     query(queryText: string, topK?: number): Promise<EmbeddedEntry[]>;
 }
+export declare function stringToUUID(str: string): string;
 //# sourceMappingURL=embeddings.d.ts.map

package/dist/infra/embeddings.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../../src/infra/embeddings.ts"],"names":[],"mappings":"AAcA,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,YAAY,CAqBtE;AAED,wBAAgB,gBAAgB,CAAC,CAAC,EAAE,YAAY,EAAE,CAAC,EAAE,YAAY,GAAG,MAAM,CAWzE;AAED,MAAM,WAAW,aAAa;IAC5B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;CACf;AAQD,qBAAa,cAAc;IAGb,OAAO,CAAC,QAAQ,CAAC,aAAa;IAF1C,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;gBAEL,aAAa,EAAE,MAAM;IAIlD,OAAO,CAAC,SAAS;IAMjB,OAAO,CAAC,SAAS;IAQjB,OAAO,CAAC,SAAS;IAIX,SAAS,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;IAWjG,UAAU,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAmBvD,QAAQ,IAAI,OAAO;IAIb,KAAK,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,SAAI,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;CAgCnE"}
+{"version":3,"file":"embeddings.d.ts","sourceRoot":"","sources":["../../src/infra/embeddings.ts"],"names":[],"mappings":"AAgBA,wBAAgB,SAAS,CAAC,IAAI,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,GAAG,YAAY,CAqBtE;AAID,wBAAgB,iBAAiB,IAAI,MAAM,CAI1C;AAGD,wBAAsB,eAAe,CAAC,IAAI,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,EAAE,GAAG,IAAI,CAAC,CAG5E;AAGD,wBAAsB,UAAU,CAAC,KAAK,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,EAAE,EAAE,CAAC,CAIrE;AAsCD,wBAAgB,gBAAgB,CAAC,CAAC,EAAE,YAAY,EAAE,CAAC,EAAE,YAAY,GAAG,MAAM,CAUzE;AAID,MAAM,WAAW,aAAa;IAC5B,QAAQ,EAAE,MAAM,CAAC;IACjB,QAAQ,EAAE,MAAM,CAAC;IACjB,IAAI,EAAE,MAAM,CAAC;IACb,KAAK,EAAE,MAAM,CAAC;CACf;AASD,qBAAa,cAAc;IAGb,OAAO,CAAC,QAAQ,CAAC,aAAa;IAF1C,OAAO,CAAC,QAAQ,CAAC,QAAQ,CAAS;gBAEL,aAAa,EAAE,MAAM;IAIlD,OAAO,CAAC,SAAS;IAMjB,OAAO,CAAC,SAAS;IAQjB,OAAO,CAAC,SAAS;IAIX,SAAS,CAAC,QAAQ,EAAE,MAAM,EAAE,QAAQ,EAAE,MAAM,EAAE,IAAI,EAAE,MAAM,EAAE,KAAK,EAAE,MAAM,GAAG,OAAO,CAAC,YAAY,CAAC;IAoBjG,UAAU,CAAC,UAAU,EAAE,MAAM,EAAE,GAAG,OAAO,CAAC,MAAM,CAAC;IAmBvD,QAAQ,IAAI,OAAO;IAIb,KAAK,CAAC,SAAS,EAAE,MAAM,EAAE,IAAI,SAAI,GAAG,OAAO,CAAC,aAAa,EAAE,CAAC;CAiCnE;AAID,wBAAgB,YAAY,CAAC,GAAG,EAAE,MAAM,GAAG,MAAM,CAGhD"}

package/dist/infra/embeddings.js

@@ -1,5 +1,6 @@
 import { existsSync, mkdirSync, readFileSync, readdirSync, writeFileSync } from 'fs';
 import { join } from 'path';
+import { createHash } from 'crypto';
 const VECTOR_DIMENSIONS = 384;
 function hashToken(token) {
     let hash = 2166136261;
@@ -9,6 +10,7 @@ function hashToken(token) {
     }
     return hash >>> 0;
 }
+// Local hash-based embedding — deterministic, zero cost, not semantic
 export function embedText(text, maxChars) {
     const vector = new Float32Array(VECTOR_DIMENSIONS);
     const tokens = text
@@ -31,10 +33,66 @@ export function embedText(text, maxChars) {
         vector[i] *= scale;
     return vector;
 }
+// ── Real Embedding API ────────────────────────────────────────────────────────
+export function embeddingProvider() {
+    if (process.env.VOYAGE_API_KEY)
+        return 'voyage-code-3 (1024d)';
+    if (process.env.OPENAI_API_KEY)
+        return 'text-embedding-3-small (1536d)';
+    return 'hash-384d (local, no API key)';
+}
+// Single text — returns null if no API key configured
+export async function embedTextRemote(text) {
+    const batch = await embedBatch([text]);
+    return batch[0] ?? null;
+}
+// Batch embed — falls back to local hash when no API key
+export async function embedBatch(texts) {
+    if (process.env.VOYAGE_API_KEY)
+        return callVoyage(texts);
+    if (process.env.OPENAI_API_KEY)
+        return callOpenAI(texts);
+    return texts.map((t) => Array.from(embedText(t, 2000)));
+}
+async function callVoyage(texts) {
+    const results = [];
+    // Voyage accepts up to 128 inputs per request
+    for (let i = 0; i < texts.length; i += 128) {
+        const batch = texts.slice(i, i + 128);
+        const res = await fetch('https://api.voyageai.com/v1/embeddings', {
+            method: 'POST',
+            headers: { 'Content-Type': 'application/json', Authorization: `Bearer ${process.env.VOYAGE_API_KEY}` },
+            body: JSON.stringify({ input: batch, model: 'voyage-code-3' }),
+        });
+        if (!res.ok)
+            throw new Error(`Voyage API ${res.status}: ${await res.text()}`);
+        const json = await res.json();
+        results.push(...json.data.map((d) => d.embedding));
+    }
+    return results;
+}
+async function callOpenAI(texts) {
+    const results = [];
+    // OpenAI accepts up to 100 inputs per request
+    for (let i = 0; i < texts.length; i += 100) {
+        const batch = texts.slice(i, i + 100);
+        const res = await fetch('https://api.openai.com/v1/embeddings', {
+            method: 'POST',
+            headers: { 'Content-Type': 'application/json', Authorization: `Bearer ${process.env.OPENAI_API_KEY}` },
+            body: JSON.stringify({ input: batch, model: 'text-embedding-3-small' }),
+        });
+        if (!res.ok)
+            throw new Error(`OpenAI API ${res.status}: ${await res.text()}`);
+        const json = await res.json();
+        results.push(...json.data.map((d) => d.embedding));
+    }
+    return results;
+}
+// ── Similarity ────────────────────────────────────────────────────────────────
 export function cosineSimilarity(a, b) {
-    let dot = 0;
-    let normA = 0;
-    let normB = 0;
+    if (a.length !== b.length)
+        return 0;
+    let dot = 0, normA = 0, normB = 0;
     for (let i = 0; i < a.length; i++) {
         dot += a[i] * b[i];
         normA += a[i] * a[i];
@@ -67,12 +125,21 @@ export class EmbeddingStore {
         writeFileSync(this.cacheFile(category, filename), JSON.stringify(cache), 'utf8');
     }
     async embedFile(category, filename, text, mtime) {
+        const provider = embeddingProvider();
         const cached = this.loadCache(category, filename);
-        if (cached && cached.mtime === mtime) {
+        // Cache hit: same mtime AND same provider (dimension may differ between providers)
+        if (cached && cached.mtime === mtime && cached.provider === provider) {
             return new Float32Array(cached.vector);
         }
-        const vector = Array.from(embedText(text, 2000));
-        this.saveCache(category, filename, { vector, mtime, text: text.slice(0, 500) });
+        let vector;
+        const remote = await embedTextRemote(text.slice(0, 4000));
+        if (remote) {
+            vector = remote;
+        }
+        else {
+            vector = Array.from(embedText(text, 2000));
+        }
+        this.saveCache(category, filename, { vector, mtime, text: text.slice(0, 500), provider });
         return new Float32Array(vector);
     }
     async buildIndex(categories) {
@@ -97,7 +164,8 @@ export class EmbeddingStore {
         return existsSync(this.indexDir);
     }
     async query(queryText, topK = 5) {
-        const queryVec = embedText(queryText, 500);
+        const remote = await embedTextRemote(queryText);
+        const queryVec = remote ? new Float32Array(remote) : embedText(queryText, 500);
         const results = [];
         if (!existsSync(this.indexDir))
             return results;
@@ -125,4 +193,9 @@ export class EmbeddingStore {
             .slice(0, topK);
     }
 }
+// ── Deterministic UUID from string (for vector store IDs) ────────────────────
+export function stringToUUID(str) {
+    const h = createHash('sha256').update(str).digest('hex');
+    return `${h.slice(0, 8)}-${h.slice(8, 12)}-4${h.slice(13, 16)}-${h.slice(16, 20)}-${h.slice(20, 32)}`;
+}
 //# sourceMappingURL=embeddings.js.map

package/dist/infra/embeddings.js.map

@@ -1 +1 @@
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package/dist/infra/knowledge.js

@@ -1,7 +1,7 @@
 import { join } from 'path';
 import { mkdirSync, readdirSync, readFileSync, writeFileSync, existsSync } from 'fs';
 import { EmbeddingStore } from './embeddings.js';
-import { BM25Index, hybridScore } from './bm25.js';
+import { BM25Index, rrfScore } from './bm25.js';
 const CATEGORIES = [
     'architecture',
     'bugs',
@@ -108,10 +108,10 @@ export class KnowledgeStore {
                 .filter(Boolean)
                 .join('\n\n');
         }
-        // Hybrid: BM25 + vector cosine
+        // Hybrid: BM25 + vector via Reciprocal Rank Fusion (no alpha tuning needed)
         const vectorResults = await this.embeddings.query(query, topK * 2);
         const vecScores = vectorResults.map((r) => ({ id: `${r.category}/${r.filename}`, score: r.score }));
-        const hybrid = hybridScore(bm25Results, vecScores, 0.5).slice(0, topK);
+        const hybrid = rrfScore(bm25Results, vecScores).slice(0, topK);
         return hybrid
             .map(({ id }) => {
             const e = allEntries.find((x) => `${x.category}/${x.filename}` === id);

package/dist/infra/knowledge.js.map

@@ -1 +1 @@
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package/dist/infra/reranker.d.ts

@@ -0,0 +1,21 @@
+export interface RerankCandidate {
+    id: string;
+    content: string;
+}
+export interface RerankResult {
+    id: string;
+    rank: number;
+    reason?: string;
+}
+/**
+ * Re-rank candidates using Claude as a cross-encoder.
+ * Retrieves top-20, re-ranks to top-K. Cost: ~500 tokens per call.
+ * Falls back to original order if API unavailable.
+ */
+export declare function rerankWithLLM(query: string, candidates: RerankCandidate[], topK?: number): Promise<RerankResult[]>;
+/**
+ * Lightweight re-rank using keyword overlap score — zero cost, no API.
+ * Useful as fallback or for testing without spending tokens.
+ */
+export declare function rerankLocal(query: string, candidates: RerankCandidate[], topK?: number): RerankResult[];
+//# sourceMappingURL=reranker.d.ts.map

package/dist/infra/reranker.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"reranker.d.ts","sourceRoot":"","sources":["../../src/infra/reranker.ts"],"names":[],"mappings":"AAEA,MAAM,WAAW,eAAe;IAC9B,EAAE,EAAE,MAAM,CAAC;IACX,OAAO,EAAE,MAAM,CAAC;CACjB;AAED,MAAM,WAAW,YAAY;IAC3B,EAAE,EAAE,MAAM,CAAC;IACX,IAAI,EAAE,MAAM,CAAC;IACb,MAAM,CAAC,EAAE,MAAM,CAAC;CACjB;AAED;;;;GAIG;AACH,wBAAsB,aAAa,CACjC,KAAK,EAAE,MAAM,EACb,UAAU,EAAE,eAAe,EAAE,EAC7B,IAAI,SAAI,GACP,OAAO,CAAC,YAAY,EAAE,CAAC,CAgDzB;AAED;;;GAGG;AACH,wBAAgB,WAAW,CACzB,KAAK,EAAE,MAAM,EACb,UAAU,EAAE,eAAe,EAAE,EAC7B,IAAI,SAAI,GACP,YAAY,EAAE,CAahB"}

package/dist/infra/reranker.js

@@ -0,0 +1,68 @@
+import Anthropic from '@anthropic-ai/sdk';
+/**
+ * Re-rank candidates using Claude as a cross-encoder.
+ * Retrieves top-20, re-ranks to top-K. Cost: ~500 tokens per call.
+ * Falls back to original order if API unavailable.
+ */
+export async function rerankWithLLM(query, candidates, topK = 5) {
+    if (candidates.length <= 1) {
+        return candidates.slice(0, topK).map((c, i) => ({ id: c.id, rank: i }));
+    }
+    const apiKey = process.env.ANTHROPIC_API_KEY;
+    if (!apiKey) {
+        return candidates.slice(0, topK).map((c, i) => ({ id: c.id, rank: i }));
+    }
+    const numbered = candidates
+        .slice(0, 20) // re-rank at most 20 candidates
+        .map((c, i) => `[${i + 1}] ${c.content.slice(0, 300)}`)
+        .join('\n\n');
+    const prompt = `You are a code search relevance judge.
+
+Query: "${query}"
+
+Rank these code chunks from most to least relevant. Return ONLY a JSON array of numbers representing the ranking (1-indexed), most relevant first.
+Example: [3, 1, 7, 2, 5] means chunk 3 is most relevant, then 1, then 7, etc.
+
+Chunks:
+${numbered}
+
+JSON array (top ${topK} only):`;
+    try {
+        const client = new Anthropic({ apiKey });
+        const response = await client.messages.create({
+            model: 'claude-haiku-4-5-20251001',
+            max_tokens: 100,
+            messages: [{ role: 'user', content: prompt }],
+        });
+        const text = response.content[0]?.type === 'text' ? response.content[0].text.trim() : '';
+        const match = /\[[\d,\s]+\]/.exec(text);
+        if (!match)
+            throw new Error('No JSON array in response');
+        const ranks = JSON.parse(match[0]);
+        return ranks
+            .filter((r) => r >= 1 && r <= candidates.length)
+            .slice(0, topK)
+            .map((r, i) => ({ id: candidates[r - 1].id, rank: i }));
+    }
+    catch {
+        // Fallback: return original order
+        return candidates.slice(0, topK).map((c, i) => ({ id: c.id, rank: i }));
+    }
+}
+/**
+ * Lightweight re-rank using keyword overlap score — zero cost, no API.
+ * Useful as fallback or for testing without spending tokens.
+ */
+export function rerankLocal(query, candidates, topK = 5) {
+    const queryTerms = query.toLowerCase().match(/[a-z0-9_]{2,}/g) ?? [];
+    const scored = candidates.map((c, i) => {
+        const text = c.content.toLowerCase();
+        const score = queryTerms.reduce((s, t) => s + (text.includes(t) ? 1 : 0), 0);
+        return { id: c.id, originalRank: i, score };
+    });
+    return scored
+        .sort((a, b) => b.score - a.score || a.originalRank - b.originalRank)
+        .slice(0, topK)
+        .map((r, i) => ({ id: r.id, rank: i }));
+}
+//# sourceMappingURL=reranker.js.map

package/dist/infra/reranker.js.map

@@ -0,0 +1 @@
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package/dist/infra/vector-store.d.ts

@@ -0,0 +1,37 @@
+export interface VectorResult {
+    id: string;
+    score: number;
+    payload: Record<string, unknown>;
+}
+export interface VectorStore {
+    upsert(id: string, vector: number[], payload: Record<string, unknown>): Promise<void>;
+    search(vector: number[], topK: number): Promise<VectorResult[]>;
+    clear(): Promise<void>;
+    size(): number;
+}
+export declare class JsonFileStore implements VectorStore {
+    private readonly filePath;
+    private entries;
+    constructor(filePath: string);
+    private load;
+    private save;
+    upsert(id: string, vector: number[], payload: Record<string, unknown>): Promise<void>;
+    search(queryVec: number[], topK: number): Promise<VectorResult[]>;
+    clear(): Promise<void>;
+    size(): number;
+}
+export declare class QdrantStore implements VectorStore {
+    private readonly url;
+    private readonly collection;
+    private _size;
+    private initialized;
+    constructor(url: string, collection: string);
+    private ensureCollection;
+    upsert(id: string, vector: number[], payload: Record<string, unknown>): Promise<void>;
+    search(vector: number[], topK: number): Promise<VectorResult[]>;
+    clear(): Promise<void>;
+    size(): number;
+}
+export declare function createVectorStore(cwd: string): VectorStore;
+export declare function vectorStoreBackend(): string;
+//# sourceMappingURL=vector-store.d.ts.map

package/dist/infra/vector-store.d.ts.map

@@ -0,0 +1 @@
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package/dist/infra/vector-store.js

@@ -0,0 +1,126 @@
+import { mkdirSync, readFileSync, writeFileSync } from 'fs';
+import { dirname, join } from 'path';
+import { cosineSimilarity, stringToUUID } from './embeddings.js';
+export class JsonFileStore {
+    filePath;
+    entries = [];
+    constructor(filePath) {
+        this.filePath = filePath;
+        this.load();
+    }
+    load() {
+        try {
+            const raw = JSON.parse(readFileSync(this.filePath, 'utf8'));
+            this.entries = raw.map((e) => ({ id: e.id, vector: new Float32Array(e.vector), payload: e.payload }));
+        }
+        catch { /* fresh store */ }
+    }
+    save() {
+        mkdirSync(dirname(this.filePath), { recursive: true });
+        const raw = this.entries.map((e) => ({
+            id: e.id, vector: Array.from(e.vector), payload: e.payload,
+        }));
+        writeFileSync(this.filePath, JSON.stringify(raw), 'utf8');
+    }
+    async upsert(id, vector, payload) {
+        const idx = this.entries.findIndex((e) => e.id === id);
+        const entry = { id, vector: new Float32Array(vector), payload };
+        if (idx >= 0)
+            this.entries[idx] = entry;
+        else
+            this.entries.push(entry);
+        this.save();
+    }
+    async search(queryVec, topK) {
+        const q = new Float32Array(queryVec);
+        return this.entries
+            .map((e) => ({ id: e.id, score: cosineSimilarity(q, e.vector), payload: e.payload }))
+            .sort((a, b) => b.score - a.score)
+            .slice(0, topK);
+    }
+    async clear() {
+        this.entries = [];
+        this.save();
+    }
+    size() { return this.entries.length; }
+}
+// ── QdrantStore — production-ready, requires Qdrant instance ─────────────────
+// Start locally: docker run -p 6333:6333 qdrant/qdrant
+// Or use Qdrant Cloud (free tier available at cloud.qdrant.io)
+export class QdrantStore {
+    url;
+    collection;
+    _size = 0;
+    initialized = false;
+    constructor(url, collection) {
+        this.url = url;
+        this.collection = collection;
+    }
+    async ensureCollection(dimension) {
+        if (this.initialized)
+            return;
+        // Check if collection exists
+        const check = await fetch(`${this.url}/collections/${this.collection}`);
+        if (check.ok) {
+            this.initialized = true;
+            return;
+        }
+        // Create collection with cosine distance
+        const res = await fetch(`${this.url}/collections/${this.collection}`, {
+            method: 'PUT',
+            headers: { 'Content-Type': 'application/json' },
+            body: JSON.stringify({ vectors: { size: dimension, distance: 'Cosine' } }),
+        });
+        if (!res.ok)
+            throw new Error(`Qdrant create collection: ${res.status} ${await res.text()}`);
+        this.initialized = true;
+    }
+    async upsert(id, vector, payload) {
+        await this.ensureCollection(vector.length);
+        const res = await fetch(`${this.url}/collections/${this.collection}/points`, {
+            method: 'PUT',
+            headers: { 'Content-Type': 'application/json' },
+            body: JSON.stringify({
+                points: [{ id: stringToUUID(id), vector, payload: { ...payload, _id: id } }],
+            }),
+        });
+        if (!res.ok)
+            throw new Error(`Qdrant upsert: ${res.status} ${await res.text()}`);
+        this._size++;
+    }
+    async search(vector, topK) {
+        await this.ensureCollection(vector.length);
+        const res = await fetch(`${this.url}/collections/${this.collection}/points/search`, {
+            method: 'POST',
+            headers: { 'Content-Type': 'application/json' },
+            body: JSON.stringify({ vector, limit: topK, with_payload: true }),
+        });
+        if (!res.ok)
+            throw new Error(`Qdrant search: ${res.status} ${await res.text()}`);
+        const json = await res.json();
+        return json.result.map((r) => ({
+            id: String(r.payload['_id'] ?? ''),
+            score: r.score,
+            payload: r.payload,
+        }));
+    }
+    async clear() {
+        await fetch(`${this.url}/collections/${this.collection}`, { method: 'DELETE' });
+        this.initialized = false;
+        this._size = 0;
+    }
+    size() { return this._size; }
+}
+// ── Factory ───────────────────────────────────────────────────────────────────
+export function createVectorStore(cwd) {
+    if (process.env.QDRANT_URL) {
+        // Derive collection name from project path (last segment, safe chars)
+        const projectSlug = cwd.split('/').filter(Boolean).pop()?.replace(/[^a-z0-9-]/gi, '-').toLowerCase() ?? 'project';
+        return new QdrantStore(process.env.QDRANT_URL, `aion-${projectSlug}`);
+    }
+    return new JsonFileStore(join(cwd, '.ai-runtime', 'vectors.json'));
+}
+export function vectorStoreBackend() {
+    return process.env.QDRANT_URL ? `Qdrant (${process.env.QDRANT_URL})` : 'JSON file (.ai-runtime/vectors.json)';
+}
+//# sourceMappingURL=vector-store.js.map

package/dist/infra/vector-store.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@aionlabsai/aion",
-  "version": "0.2.11",
+  "version": "0.2.13",
   "description": "Multi-agent AI engineering runtime — audit, fix, graph, analyze",
   "type": "module",
   "bin": {