@aigentic/claude-flow 3.7.0-alpha.69

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  1. package/.claude/agents/MIGRATION_SUMMARY.md +222 -0
  2. package/.claude/agents/analysis/analyze-code-quality.md +58 -0
  3. package/.claude/agents/analysis/code-analyzer.md +189 -0
  4. package/.claude/agents/analysis/code-review/analyze-code-quality.md +58 -0
  5. package/.claude/agents/architecture/arch-system-design.md +157 -0
  6. package/.claude/agents/architecture/system-design/arch-system-design.md +36 -0
  7. package/.claude/agents/base-template-generator.md +41 -0
  8. package/.claude/agents/browser/browser-agent.yaml +182 -0
  9. package/.claude/agents/consensus/byzantine-coordinator.md +43 -0
  10. package/.claude/agents/consensus/crdt-synchronizer.md +977 -0
  11. package/.claude/agents/consensus/gossip-coordinator.md +43 -0
  12. package/.claude/agents/consensus/performance-benchmarker.md +831 -0
  13. package/.claude/agents/consensus/quorum-manager.md +803 -0
  14. package/.claude/agents/consensus/raft-manager.md +43 -0
  15. package/.claude/agents/consensus/security-manager.md +602 -0
  16. package/.claude/agents/core/coder.md +255 -0
  17. package/.claude/agents/core/planner.md +152 -0
  18. package/.claude/agents/core/researcher.md +174 -0
  19. package/.claude/agents/core/reviewer.md +309 -0
  20. package/.claude/agents/core/tester.md +300 -0
  21. package/.claude/agents/custom/test-long-runner.md +43 -0
  22. package/.claude/agents/data/data-ml-model.md +445 -0
  23. package/.claude/agents/data/ml/data-ml-model.md +76 -0
  24. package/.claude/agents/database-specialist.md +9 -0
  25. package/.claude/agents/development/backend/dev-backend-api.md +29 -0
  26. package/.claude/agents/development/dev-backend-api.md +178 -0
  27. package/.claude/agents/devops/ci-cd/ops-cicd-github.md +52 -0
  28. package/.claude/agents/devops/ops-cicd-github.md +165 -0
  29. package/.claude/agents/documentation/api-docs/docs-api-openapi.md +63 -0
  30. package/.claude/agents/documentation/docs-api-openapi.md +355 -0
  31. package/.claude/agents/dual-mode/codex-coordinator.md +206 -0
  32. package/.claude/agents/dual-mode/codex-worker.md +190 -0
  33. package/.claude/agents/dual-mode/dual-orchestrator.md +253 -0
  34. package/.claude/agents/flow-nexus/app-store.md +88 -0
  35. package/.claude/agents/flow-nexus/authentication.md +69 -0
  36. package/.claude/agents/flow-nexus/challenges.md +81 -0
  37. package/.claude/agents/flow-nexus/neural-network.md +88 -0
  38. package/.claude/agents/flow-nexus/payments.md +83 -0
  39. package/.claude/agents/flow-nexus/sandbox.md +76 -0
  40. package/.claude/agents/flow-nexus/swarm.md +76 -0
  41. package/.claude/agents/flow-nexus/user-tools.md +96 -0
  42. package/.claude/agents/flow-nexus/workflow.md +84 -0
  43. package/.claude/agents/github/code-review-swarm.md +521 -0
  44. package/.claude/agents/github/github-modes.md +154 -0
  45. package/.claude/agents/github/issue-tracker.md +299 -0
  46. package/.claude/agents/github/multi-repo-swarm.md +525 -0
  47. package/.claude/agents/github/pr-manager.md +163 -0
  48. package/.claude/agents/github/project-board-sync.md +478 -0
  49. package/.claude/agents/github/release-manager.md +336 -0
  50. package/.claude/agents/github/release-swarm.md +551 -0
  51. package/.claude/agents/github/repo-architect.md +365 -0
  52. package/.claude/agents/github/swarm-issue.md +548 -0
  53. package/.claude/agents/github/swarm-pr.md +399 -0
  54. package/.claude/agents/github/sync-coordinator.md +423 -0
  55. package/.claude/agents/github/workflow-automation.md +605 -0
  56. package/.claude/agents/goal/agent.md +817 -0
  57. package/.claude/agents/goal/code-goal-planner.md +445 -0
  58. package/.claude/agents/goal/goal-planner.md +168 -0
  59. package/.claude/agents/hive-mind/collective-intelligence-coordinator.md +129 -0
  60. package/.claude/agents/hive-mind/queen-coordinator.md +202 -0
  61. package/.claude/agents/hive-mind/scout-explorer.md +241 -0
  62. package/.claude/agents/hive-mind/swarm-memory-manager.md +192 -0
  63. package/.claude/agents/hive-mind/worker-specialist.md +216 -0
  64. package/.claude/agents/neural/safla-neural.md +74 -0
  65. package/.claude/agents/optimization/benchmark-suite.md +663 -0
  66. package/.claude/agents/optimization/load-balancer.md +429 -0
  67. package/.claude/agents/optimization/performance-monitor.md +670 -0
  68. package/.claude/agents/optimization/resource-allocator.md +672 -0
  69. package/.claude/agents/optimization/topology-optimizer.md +806 -0
  70. package/.claude/agents/payments/agentic-payments.md +126 -0
  71. package/.claude/agents/project-coordinator.md +8 -0
  72. package/.claude/agents/python-specialist.md +9 -0
  73. package/.claude/agents/reasoning/agent.md +817 -0
  74. package/.claude/agents/reasoning/goal-planner.md +73 -0
  75. package/.claude/agents/security-auditor.md +9 -0
  76. package/.claude/agents/sona/sona-learning-optimizer.md +65 -0
  77. package/.claude/agents/sparc/architecture.md +453 -0
  78. package/.claude/agents/sparc/pseudocode.md +299 -0
  79. package/.claude/agents/sparc/refinement.md +504 -0
  80. package/.claude/agents/sparc/specification.md +258 -0
  81. package/.claude/agents/specialized/mobile/spec-mobile-react-native.md +88 -0
  82. package/.claude/agents/specialized/spec-mobile-react-native.md +227 -0
  83. package/.claude/agents/sublinear/consensus-coordinator.md +338 -0
  84. package/.claude/agents/sublinear/matrix-optimizer.md +185 -0
  85. package/.claude/agents/sublinear/pagerank-analyzer.md +299 -0
  86. package/.claude/agents/sublinear/performance-optimizer.md +368 -0
  87. package/.claude/agents/sublinear/trading-predictor.md +246 -0
  88. package/.claude/agents/swarm/adaptive-coordinator.md +364 -0
  89. package/.claude/agents/swarm/hierarchical-coordinator.md +300 -0
  90. package/.claude/agents/swarm/mesh-coordinator.md +363 -0
  91. package/.claude/agents/templates/automation-smart-agent.md +185 -0
  92. package/.claude/agents/templates/base-template-generator.md +289 -0
  93. package/.claude/agents/templates/coordinator-swarm-init.md +83 -0
  94. package/.claude/agents/templates/github-pr-manager.md +155 -0
  95. package/.claude/agents/templates/implementer-sparc-coder.md +243 -0
  96. package/.claude/agents/templates/memory-coordinator.md +163 -0
  97. package/.claude/agents/templates/migration-plan.md +724 -0
  98. package/.claude/agents/templates/orchestrator-task.md +120 -0
  99. package/.claude/agents/templates/performance-analyzer.md +179 -0
  100. package/.claude/agents/templates/sparc-coordinator.md +163 -0
  101. package/.claude/agents/testing/production-validator.md +373 -0
  102. package/.claude/agents/testing/tdd-london-swarm.md +222 -0
  103. package/.claude/agents/testing/unit/tdd-london-swarm.md +222 -0
  104. package/.claude/agents/testing/validation/production-validator.md +373 -0
  105. package/.claude/agents/typescript-specialist.md +9 -0
  106. package/.claude/agents/v3/adr-architect.md +184 -0
  107. package/.claude/agents/v3/aidefence-guardian.md +282 -0
  108. package/.claude/agents/v3/claims-authorizer.md +208 -0
  109. package/.claude/agents/v3/collective-intelligence-coordinator.md +993 -0
  110. package/.claude/agents/v3/database-specialist.md +9 -0
  111. package/.claude/agents/v3/ddd-domain-expert.md +220 -0
  112. package/.claude/agents/v3/injection-analyst.md +236 -0
  113. package/.claude/agents/v3/memory-specialist.md +995 -0
  114. package/.claude/agents/v3/performance-engineer.md +1233 -0
  115. package/.claude/agents/v3/pii-detector.md +151 -0
  116. package/.claude/agents/v3/project-coordinator.md +8 -0
  117. package/.claude/agents/v3/python-specialist.md +9 -0
  118. package/.claude/agents/v3/reasoningbank-learner.md +213 -0
  119. package/.claude/agents/v3/security-architect-aidefence.md +410 -0
  120. package/.claude/agents/v3/security-architect.md +867 -0
  121. package/.claude/agents/v3/security-auditor.md +771 -0
  122. package/.claude/agents/v3/sparc-orchestrator.md +182 -0
  123. package/.claude/agents/v3/swarm-memory-manager.md +157 -0
  124. package/.claude/agents/v3/test-architect.md +9 -0
  125. package/.claude/agents/v3/typescript-specialist.md +9 -0
  126. package/.claude/agents/v3/v3-integration-architect.md +312 -0
  127. package/.claude/agents/v3/v3-memory-specialist.md +281 -0
  128. package/.claude/agents/v3/v3-performance-engineer.md +363 -0
  129. package/.claude/agents/v3/v3-queen-coordinator.md +63 -0
  130. package/.claude/agents/v3/v3-security-architect.md +140 -0
  131. package/.claude/checkpoints/1767754460.json +8 -0
  132. package/.claude/commands/agents/README.md +10 -0
  133. package/.claude/commands/agents/agent-capabilities.md +21 -0
  134. package/.claude/commands/agents/agent-coordination.md +28 -0
  135. package/.claude/commands/agents/agent-spawning.md +28 -0
  136. package/.claude/commands/agents/agent-types.md +26 -0
  137. package/.claude/commands/analysis/COMMAND_COMPLIANCE_REPORT.md +54 -0
  138. package/.claude/commands/analysis/README.md +9 -0
  139. package/.claude/commands/analysis/bottleneck-detect.md +162 -0
  140. package/.claude/commands/analysis/performance-bottlenecks.md +59 -0
  141. package/.claude/commands/analysis/performance-report.md +25 -0
  142. package/.claude/commands/analysis/token-efficiency.md +45 -0
  143. package/.claude/commands/analysis/token-usage.md +25 -0
  144. package/.claude/commands/automation/README.md +9 -0
  145. package/.claude/commands/automation/auto-agent.md +122 -0
  146. package/.claude/commands/automation/self-healing.md +106 -0
  147. package/.claude/commands/automation/session-memory.md +90 -0
  148. package/.claude/commands/automation/smart-agents.md +73 -0
  149. package/.claude/commands/automation/smart-spawn.md +25 -0
  150. package/.claude/commands/automation/workflow-select.md +25 -0
  151. package/.claude/commands/claude-flow-help.md +103 -0
  152. package/.claude/commands/claude-flow-memory.md +107 -0
  153. package/.claude/commands/claude-flow-swarm.md +205 -0
  154. package/.claude/commands/coordination/README.md +9 -0
  155. package/.claude/commands/coordination/agent-spawn.md +25 -0
  156. package/.claude/commands/coordination/init.md +44 -0
  157. package/.claude/commands/coordination/orchestrate.md +43 -0
  158. package/.claude/commands/coordination/spawn.md +45 -0
  159. package/.claude/commands/coordination/swarm-init.md +85 -0
  160. package/.claude/commands/coordination/task-orchestrate.md +25 -0
  161. package/.claude/commands/flow-nexus/app-store.md +124 -0
  162. package/.claude/commands/flow-nexus/challenges.md +120 -0
  163. package/.claude/commands/flow-nexus/login-registration.md +65 -0
  164. package/.claude/commands/flow-nexus/neural-network.md +134 -0
  165. package/.claude/commands/flow-nexus/payments.md +116 -0
  166. package/.claude/commands/flow-nexus/sandbox.md +83 -0
  167. package/.claude/commands/flow-nexus/swarm.md +87 -0
  168. package/.claude/commands/flow-nexus/user-tools.md +152 -0
  169. package/.claude/commands/flow-nexus/workflow.md +115 -0
  170. package/.claude/commands/github/README.md +11 -0
  171. package/.claude/commands/github/code-review-swarm.md +514 -0
  172. package/.claude/commands/github/code-review.md +25 -0
  173. package/.claude/commands/github/github-modes.md +147 -0
  174. package/.claude/commands/github/github-swarm.md +121 -0
  175. package/.claude/commands/github/issue-tracker.md +292 -0
  176. package/.claude/commands/github/issue-triage.md +25 -0
  177. package/.claude/commands/github/multi-repo-swarm.md +519 -0
  178. package/.claude/commands/github/pr-enhance.md +26 -0
  179. package/.claude/commands/github/pr-manager.md +170 -0
  180. package/.claude/commands/github/project-board-sync.md +471 -0
  181. package/.claude/commands/github/release-manager.md +338 -0
  182. package/.claude/commands/github/release-swarm.md +544 -0
  183. package/.claude/commands/github/repo-analyze.md +25 -0
  184. package/.claude/commands/github/repo-architect.md +367 -0
  185. package/.claude/commands/github/swarm-issue.md +482 -0
  186. package/.claude/commands/github/swarm-pr.md +285 -0
  187. package/.claude/commands/github/sync-coordinator.md +301 -0
  188. package/.claude/commands/github/workflow-automation.md +442 -0
  189. package/.claude/commands/hive-mind/README.md +17 -0
  190. package/.claude/commands/hive-mind/hive-mind-consensus.md +8 -0
  191. package/.claude/commands/hive-mind/hive-mind-init.md +18 -0
  192. package/.claude/commands/hive-mind/hive-mind-memory.md +8 -0
  193. package/.claude/commands/hive-mind/hive-mind-metrics.md +8 -0
  194. package/.claude/commands/hive-mind/hive-mind-resume.md +8 -0
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  196. package/.claude/commands/hive-mind/hive-mind-spawn.md +21 -0
  197. package/.claude/commands/hive-mind/hive-mind-status.md +8 -0
  198. package/.claude/commands/hive-mind/hive-mind-stop.md +8 -0
  199. package/.claude/commands/hive-mind/hive-mind-wizard.md +8 -0
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  201. package/.claude/commands/hooks/README.md +11 -0
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  203. package/.claude/commands/hooks/post-edit.md +117 -0
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  207. package/.claude/commands/hooks/session-end.md +118 -0
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  209. package/.claude/commands/memory/README.md +9 -0
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  219. package/.claude/commands/monitoring/swarm-monitor.md +25 -0
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@@ -0,0 +1,1240 @@
1
+ /**
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+ * Memory MCP Tools for CLI - V3 with sql.js/HNSW Backend
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+ *
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+ * UPGRADED: Now uses the advanced sql.js + HNSW backend for:
5
+ * - 150x-12,500x faster semantic search
6
+ * - Vector embeddings with cosine similarity
7
+ * - Persistent SQLite storage (WASM)
8
+ * - Backward compatible with legacy JSON storage (auto-migrates)
9
+ *
10
+ * @module v3/cli/mcp-tools/memory-tools
11
+ */
12
+ import { existsSync, mkdirSync, readdirSync, readFileSync, unlinkSync, writeFileSync } from 'fs';
13
+ import { homedir } from 'os';
14
+ import { join, resolve } from 'path';
15
+ import { createHash } from 'crypto';
16
+ import { validateIdentifier } from './validate-input.js';
17
+ // #1604: Align with memory-initializer.ts — single source of truth is .swarm/memory.db
18
+ const MEMORY_DIR = '.swarm';
19
+ const LEGACY_MEMORY_FILE = 'store.json';
20
+ const LEGACY_MEMORY_DIR = '.claude-flow/memory';
21
+ const MIGRATION_MARKER = '.migrated-to-sqlite';
22
+ function getMemoryDir() {
23
+ return resolve(MEMORY_DIR);
24
+ }
25
+ function getLegacyPath() {
26
+ return resolve(join(MEMORY_DIR, LEGACY_MEMORY_FILE));
27
+ }
28
+ function getMigrationMarkerPath() {
29
+ return resolve(join(MEMORY_DIR, MIGRATION_MARKER));
30
+ }
31
+ function ensureMemoryDir() {
32
+ const dir = getMemoryDir();
33
+ if (!existsSync(dir)) {
34
+ mkdirSync(dir, { recursive: true });
35
+ }
36
+ }
37
+ // D-2: Input bounds for memory parameters
38
+ const MAX_KEY_LENGTH = 1024;
39
+ const MAX_VALUE_SIZE = 1024 * 1024; // 1MB
40
+ const MAX_QUERY_LENGTH = 4096;
41
+ // #1425 — single source of truth for the dangerous-character set rejected by
42
+ // validateMemoryInput. Imported by sanitizeMemoryKey so write-side sanitization
43
+ // and read-side rejection can never drift apart (the symmetry bug behind #1884).
44
+ const DANGEROUS_KEY_CHARS = /[;&|`$(){}[\]<>!#\\\0]|\.\.[/\\]/g;
45
+ const DANGEROUS_KEY_PATTERN = /[;&|`$(){}[\]<>!#\\\0]|\.\.[/\\]/;
46
+ function validateMemoryInput(key, value, query, namespace) {
47
+ if (key && key.length > MAX_KEY_LENGTH) {
48
+ throw new Error(`Key exceeds maximum length of ${MAX_KEY_LENGTH} characters`);
49
+ }
50
+ if (value && value.length > MAX_VALUE_SIZE) {
51
+ throw new Error(`Value exceeds maximum size of ${MAX_VALUE_SIZE} bytes`);
52
+ }
53
+ if (query && query.length > MAX_QUERY_LENGTH) {
54
+ throw new Error(`Query exceeds maximum length of ${MAX_QUERY_LENGTH} characters`);
55
+ }
56
+ // Reject path traversal and shell metacharacters in keys/namespaces (#1425)
57
+ if (key && DANGEROUS_KEY_PATTERN.test(key)) {
58
+ throw new Error('Key contains disallowed characters');
59
+ }
60
+ if (namespace && DANGEROUS_KEY_PATTERN.test(namespace)) {
61
+ throw new Error('Namespace contains disallowed characters');
62
+ }
63
+ }
64
+ // #1884 — sanitize a key produced from arbitrary input (markdown headings,
65
+ // frontmatter names, file names) so it survives validateMemoryInput on the
66
+ // read/delete path. Replaces every dangerous char with `_`. Truncates to
67
+ // MAX_KEY_LENGTH so the bound check in validateMemoryInput also passes.
68
+ // Keep this in sync with DANGEROUS_KEY_PATTERN — they share DANGEROUS_KEY_CHARS.
69
+ function sanitizeMemoryKey(key) {
70
+ const safe = key.replace(DANGEROUS_KEY_CHARS, '_');
71
+ return safe.length > MAX_KEY_LENGTH ? safe.slice(0, MAX_KEY_LENGTH) : safe;
72
+ }
73
+ // #1937 — minimal glob → RegExp helper for memory_import_claude exclusion
74
+ // patterns. Anchored. Supports the three operators the issue's voice-fidelity
75
+ // workflow needs:
76
+ // `**` — any chars including path separators
77
+ // `*` — any chars except path separators
78
+ // `?` — exactly one char except a path separator
79
+ // Everything else is regex-escaped. Used to match absolute file paths.
80
+ function globToRegex(pattern) {
81
+ // Tokenize so we can replace `**` before `*` without overlap.
82
+ let out = '';
83
+ for (let i = 0; i < pattern.length; i++) {
84
+ const c = pattern[i];
85
+ if (c === '*' && pattern[i + 1] === '*') {
86
+ out += '.*';
87
+ i++;
88
+ }
89
+ else if (c === '*') {
90
+ out += '[^/\\\\]*';
91
+ }
92
+ else if (c === '?') {
93
+ out += '[^/\\\\]';
94
+ }
95
+ else if (/[.+^$|(){}\[\]\\]/.test(c)) {
96
+ out += '\\' + c;
97
+ }
98
+ else {
99
+ out += c;
100
+ }
101
+ }
102
+ return new RegExp('^' + out + '$');
103
+ }
104
+ // #1883 — resolve the Claude-Code project memory directory for the *current*
105
+ // project. Claude Code hashes the project path differently per host OS, and
106
+ // our previous logic only POSIX-slash-replaced cwd, which breaks for:
107
+ // - WSL bridges where cwd is `/mnt/<drive>/...` but Claude Code is on Windows
108
+ // - paths containing spaces (Claude Code replaces spaces with dashes)
109
+ // - any leading slash on POSIX (Claude Code strips it)
110
+ // Strategy: try several candidate hashes and return the first one with a
111
+ // memory dir that exists. An explicit `projectPathOverride` short-circuits
112
+ // the heuristics for callers that know the canonical project path.
113
+ function resolveProjectMemoryDir(claudeProjectsDir, projectPathOverride) {
114
+ const candidates = new Set();
115
+ const sources = [];
116
+ if (projectPathOverride && projectPathOverride.length > 0) {
117
+ sources.push(projectPathOverride);
118
+ }
119
+ else {
120
+ sources.push(process.cwd());
121
+ }
122
+ for (const source of sources) {
123
+ // Candidate 1: legacy POSIX hash — what shipped before #1883
124
+ candidates.add(source.replace(/\//g, '-'));
125
+ // Candidate 2: WSL `/mnt/<drive>/...` translated to Claude-Code Windows hash
126
+ // e.g. `/mnt/c/Users/x/Project Name` → `C--Users-x-Project-Name`
127
+ const wsl = source.match(/^\/mnt\/([a-z])(\/.*)?$/i);
128
+ if (wsl) {
129
+ const drive = wsl[1].toUpperCase();
130
+ const rest = (wsl[2] ?? '').replace(/\//g, '-').replace(/ /g, '-');
131
+ candidates.add(`${drive}-${rest}`);
132
+ }
133
+ // Candidate 3: POSIX hash with leading dash stripped (Claude Code on macOS/Linux)
134
+ const stripped = source.replace(/\//g, '-').replace(/^-+/, '');
135
+ candidates.add(stripped);
136
+ // Candidate 4: spaces replaced with dashes (Claude Code's space rule)
137
+ candidates.add(source.replace(/\//g, '-').replace(/ /g, '-'));
138
+ // Candidate 5 (#1939): native Win32 path on a Win32 Claude Code install.
139
+ // `C:\Users\tobia\OneDrive\Desktop\Claude Stuff` →
140
+ // `C--Users-tobia-OneDrive-Desktop-Claude-Stuff`. Claude Code's on-disk
141
+ // slug replaces drive-colon AND backslashes AND whitespace with `-`.
142
+ // The earlier candidates only handled forward slashes, so a Win32+Win32
143
+ // setup never matched.
144
+ if (/^[A-Za-z]:[\\/]/.test(source)) {
145
+ candidates.add(source.replace(/[:\\/]/g, '-').replace(/\s+/g, '-'));
146
+ }
147
+ }
148
+ for (const projectHash of candidates) {
149
+ const memDir = join(claudeProjectsDir, projectHash, 'memory');
150
+ if (existsSync(memDir))
151
+ return { memDir, projectHash };
152
+ }
153
+ return null;
154
+ }
155
+ /**
156
+ * Check if legacy JSON store exists in old .claude-flow/memory/ location
157
+ */
158
+ function hasLegacyStore() {
159
+ const legacyPath = resolve(join(LEGACY_MEMORY_DIR, LEGACY_MEMORY_FILE));
160
+ const migrationMarker = resolve(join(LEGACY_MEMORY_DIR, MIGRATION_MARKER));
161
+ return existsSync(legacyPath) && !existsSync(migrationMarker);
162
+ }
163
+ /**
164
+ * Load legacy JSON store for migration
165
+ */
166
+ function loadLegacyStore() {
167
+ try {
168
+ const legacyPath = resolve(join(LEGACY_MEMORY_DIR, LEGACY_MEMORY_FILE));
169
+ if (existsSync(legacyPath)) {
170
+ const data = readFileSync(legacyPath, 'utf-8');
171
+ return JSON.parse(data);
172
+ }
173
+ }
174
+ catch {
175
+ // Return null on error
176
+ }
177
+ return null;
178
+ }
179
+ /**
180
+ * Mark migration as complete
181
+ */
182
+ function markMigrationComplete() {
183
+ const legacyDir = resolve(LEGACY_MEMORY_DIR);
184
+ if (!existsSync(legacyDir))
185
+ mkdirSync(legacyDir, { recursive: true });
186
+ writeFileSync(resolve(join(LEGACY_MEMORY_DIR, MIGRATION_MARKER)), JSON.stringify({
187
+ migratedAt: new Date().toISOString(),
188
+ version: '3.0.0',
189
+ }), 'utf-8');
190
+ }
191
+ /**
192
+ * Lazy-load memory initializer functions to avoid circular deps
193
+ */
194
+ async function getMemoryFunctions() {
195
+ const { storeEntry, searchEntries, listEntries, getEntry, deleteEntry, initializeMemoryDatabase, checkMemoryInitialization, } = await import('../memory/memory-initializer.js');
196
+ return {
197
+ storeEntry,
198
+ searchEntries,
199
+ listEntries,
200
+ getEntry,
201
+ deleteEntry,
202
+ initializeMemoryDatabase,
203
+ checkMemoryInitialization,
204
+ };
205
+ }
206
+ /**
207
+ * Ensure memory database is initialized and migrate legacy data if needed.
208
+ * #1606: Wrapped in try/catch to prevent process-level crashes that kill
209
+ * the stdio MCP transport on Windows/Codex.
210
+ */
211
+ async function ensureInitialized() {
212
+ try {
213
+ const { initializeMemoryDatabase, checkMemoryInitialization, storeEntry } = await getMemoryFunctions();
214
+ // Check if already initialized
215
+ const status = await checkMemoryInitialization();
216
+ if (!status.initialized) {
217
+ await initializeMemoryDatabase({ force: false, verbose: false });
218
+ }
219
+ // Migrate legacy JSON data if exists (from old .claude-flow/memory/ location)
220
+ if (hasLegacyStore()) {
221
+ const legacyStore = loadLegacyStore();
222
+ if (legacyStore && Object.keys(legacyStore.entries).length > 0) {
223
+ console.error('[MCP Memory] Migrating legacy JSON store to sql.js...');
224
+ let migrated = 0;
225
+ for (const [key, entry] of Object.entries(legacyStore.entries)) {
226
+ try {
227
+ const value = typeof entry.value === 'string' ? entry.value : JSON.stringify(entry.value);
228
+ await storeEntry({
229
+ key,
230
+ value,
231
+ namespace: 'default',
232
+ generateEmbeddingFlag: true,
233
+ });
234
+ migrated++;
235
+ }
236
+ catch (e) {
237
+ console.error(`[MCP Memory] Failed to migrate key "${key}":`, e);
238
+ }
239
+ }
240
+ console.error(`[MCP Memory] Migrated ${migrated}/${Object.keys(legacyStore.entries).length} entries`);
241
+ markMigrationComplete();
242
+ }
243
+ }
244
+ }
245
+ catch (error) {
246
+ console.error('[MCP Memory] Initialization failed:', error instanceof Error ? error.message : error);
247
+ }
248
+ }
249
+ export const memoryTools = [
250
+ {
251
+ name: 'memory_store',
252
+ description: 'Persistent key-value store with vector embedding — survives across sessions and is searchable by meaning, not just by file path. Use when native Write is wrong because the data is not a file (e.g. a learned pattern, a decision, a budget config) AND you need to recall it later by semantic query, not by path. Defaults to namespace="default"; pass --upsert=true to update an existing key.',
253
+ category: 'memory',
254
+ inputSchema: {
255
+ type: 'object',
256
+ properties: {
257
+ key: { type: 'string', description: 'Memory key (unique within namespace)' },
258
+ value: { description: 'Value to store (string or object)' },
259
+ namespace: { type: 'string', description: 'Namespace for organization (default: "default")' },
260
+ tags: {
261
+ type: 'array',
262
+ items: { type: 'string' },
263
+ description: 'Optional tags for filtering',
264
+ },
265
+ ttl: { type: 'number', description: 'Time-to-live in seconds (optional)' },
266
+ upsert: { type: 'boolean', description: 'If true, update existing key instead of failing (default: false)' },
267
+ },
268
+ required: ['key', 'value'],
269
+ },
270
+ handler: async (input) => {
271
+ await ensureInitialized();
272
+ const { storeEntry } = await getMemoryFunctions();
273
+ const key = input.key;
274
+ const namespace = input.namespace || 'default';
275
+ const rawValue = input.value;
276
+ const value = typeof rawValue === 'string' ? rawValue : (rawValue !== undefined ? JSON.stringify(rawValue) : '');
277
+ const tags = input.tags || [];
278
+ const ttl = input.ttl;
279
+ const upsert = input.upsert || false;
280
+ if (!value) {
281
+ return {
282
+ success: false,
283
+ key,
284
+ stored: false,
285
+ hasEmbedding: false,
286
+ error: 'Value is required and cannot be empty',
287
+ };
288
+ }
289
+ validateMemoryInput(key, value, undefined, namespace);
290
+ const startTime = performance.now();
291
+ try {
292
+ const result = await storeEntry({
293
+ key,
294
+ value,
295
+ namespace,
296
+ generateEmbeddingFlag: true,
297
+ tags,
298
+ ttl,
299
+ upsert,
300
+ });
301
+ const duration = performance.now() - startTime;
302
+ return {
303
+ success: result.success,
304
+ key,
305
+ namespace,
306
+ stored: result.success,
307
+ storedAt: new Date().toISOString(),
308
+ hasEmbedding: !!result.embedding,
309
+ embeddingDimensions: result.embedding?.dimensions || null,
310
+ backend: 'sql.js + HNSW',
311
+ storeTime: `${duration.toFixed(2)}ms`,
312
+ error: result.error,
313
+ };
314
+ }
315
+ catch (error) {
316
+ return {
317
+ success: false,
318
+ key,
319
+ error: error instanceof Error ? error.message : 'Unknown error',
320
+ };
321
+ }
322
+ },
323
+ },
324
+ {
325
+ name: 'memory_retrieve',
326
+ description: 'Read back a value previously stored via memory_store, by exact (namespace, key) — lossless, includes metadata. Use when native Read is wrong because the value is not a file (it lives in the .swarm/memory.db SQLite store) AND you know the exact key. For semantic lookup by meaning, use memory_search.',
327
+ category: 'memory',
328
+ inputSchema: {
329
+ type: 'object',
330
+ properties: {
331
+ key: { type: 'string', description: 'Memory key' },
332
+ namespace: { type: 'string', description: 'Namespace (default: "default")' },
333
+ },
334
+ required: ['key'],
335
+ },
336
+ handler: async (input) => {
337
+ await ensureInitialized();
338
+ const { getEntry } = await getMemoryFunctions();
339
+ const key = input.key;
340
+ const namespace = input.namespace || 'default';
341
+ validateMemoryInput(key, undefined, undefined, namespace);
342
+ try {
343
+ const result = await getEntry({ key, namespace });
344
+ if (result.found && result.entry) {
345
+ // Try to parse JSON value
346
+ let value = result.entry.content;
347
+ try {
348
+ value = JSON.parse(result.entry.content);
349
+ }
350
+ catch {
351
+ // Keep as string
352
+ }
353
+ return {
354
+ key,
355
+ namespace,
356
+ value,
357
+ tags: result.entry.tags,
358
+ storedAt: result.entry.createdAt,
359
+ updatedAt: result.entry.updatedAt,
360
+ accessCount: result.entry.accessCount,
361
+ hasEmbedding: result.entry.hasEmbedding,
362
+ found: true,
363
+ backend: 'sql.js + HNSW',
364
+ };
365
+ }
366
+ return {
367
+ key,
368
+ namespace,
369
+ value: null,
370
+ found: false,
371
+ };
372
+ }
373
+ catch (error) {
374
+ return {
375
+ key,
376
+ namespace,
377
+ value: null,
378
+ found: false,
379
+ error: error instanceof Error ? error.message : 'Unknown error',
380
+ };
381
+ }
382
+ },
383
+ },
384
+ {
385
+ name: 'memory_search',
386
+ description: 'Find stored memories by meaning (vector similarity), not by literal text — finds "JWT auth pattern" when you query "token-based login flow". Use when native Grep is wrong because Grep matches characters and you need to find conceptually-related entries across past sessions. Backed by HNSW index over ONNX embeddings; returns top-k with similarity scores. Pair with smart=true for query expansion + MMR diversity.',
387
+ category: 'memory',
388
+ inputSchema: {
389
+ type: 'object',
390
+ properties: {
391
+ query: { type: 'string', description: 'Search query (semantic similarity)' },
392
+ namespace: { type: 'string', description: 'Namespace to search (default: "default")' },
393
+ limit: { type: 'number', description: 'Maximum results (default: 10)' },
394
+ threshold: { type: 'number', description: 'Minimum similarity threshold 0-1 (default: 0.3)' },
395
+ smart: { type: 'boolean', description: 'Enable SmartRetrieval pipeline — query expansion, RRF fusion, recency boost, MMR diversity (default: false)' },
396
+ },
397
+ required: ['query'],
398
+ },
399
+ handler: async (input) => {
400
+ await ensureInitialized();
401
+ const { searchEntries } = await getMemoryFunctions();
402
+ const query = input.query;
403
+ const namespace = input.namespace || 'default';
404
+ const limit = input.limit ?? 10;
405
+ const threshold = input.threshold ?? 0.3;
406
+ validateMemoryInput(undefined, undefined, query);
407
+ const startTime = performance.now();
408
+ try {
409
+ // #1846: feature-detect smartSearch on the resolved memory package.
410
+ // The export landed in @claude-flow/memory@>3.0.0-alpha.14 — older
411
+ // installs pin to a build that exposes search/store/retrieve but
412
+ // not smartSearch. Throwing `is not a function` is hostile; instead
413
+ // detect at runtime and gracefully fall through to plain semantic
414
+ // search with an explicit fallback note.
415
+ let smartFallbackReason;
416
+ if (input.smart) {
417
+ // eslint-disable-next-line @typescript-eslint/no-explicit-any
418
+ let memMod;
419
+ try {
420
+ memMod = await import('@claude-flow/memory');
421
+ }
422
+ catch (err) {
423
+ smartFallbackReason = `@claude-flow/memory failed to load: ${err.message}`;
424
+ }
425
+ const smartSearch = memMod && typeof memMod.smartSearch === 'function'
426
+ ? memMod.smartSearch
427
+ : undefined;
428
+ if (smartSearch) {
429
+ // SmartRetrieval pipeline (ADR-090)
430
+ const rawSearch = async (req) => {
431
+ const r = await searchEntries({
432
+ query: req.query,
433
+ namespace: req.namespace || namespace,
434
+ limit: req.limit || limit * 3,
435
+ threshold: req.threshold ?? threshold,
436
+ });
437
+ return {
438
+ results: r.results.map(e => ({
439
+ id: e.id,
440
+ key: e.key,
441
+ content: e.content,
442
+ score: e.score,
443
+ namespace: e.namespace,
444
+ })),
445
+ };
446
+ };
447
+ const smartResult = await smartSearch(rawSearch, {
448
+ query,
449
+ namespace,
450
+ limit,
451
+ threshold,
452
+ });
453
+ const duration = performance.now() - startTime;
454
+ const results = smartResult.results.map((r) => {
455
+ let value = r.content;
456
+ try {
457
+ value = JSON.parse(r.content);
458
+ }
459
+ catch { /* keep as string */ }
460
+ return {
461
+ key: r.key,
462
+ namespace: r.namespace,
463
+ value,
464
+ similarity: r.score,
465
+ };
466
+ });
467
+ return {
468
+ query,
469
+ results,
470
+ total: results.length,
471
+ searchTime: `${duration.toFixed(2)}ms`,
472
+ backend: 'SmartRetrieval (RRF + MMR + Recency)',
473
+ stats: smartResult.stats,
474
+ };
475
+ }
476
+ // smart=true but smartSearch unavailable on installed package.
477
+ // Fall through to plain search with an explicit warning.
478
+ smartFallbackReason = smartFallbackReason
479
+ ?? 'smartSearch is not exported by the installed @claude-flow/memory build (likely a release lag — see #1846). Falling back to standard semantic search.';
480
+ }
481
+ // Original non-smart path (unchanged) — also reached when smart was
482
+ // requested but unavailable. We attach `smartFallback` to the
483
+ // response so callers can see the degradation explicitly.
484
+ const result = await searchEntries({
485
+ query,
486
+ namespace,
487
+ limit,
488
+ threshold,
489
+ });
490
+ const duration = performance.now() - startTime;
491
+ // Parse JSON values in results
492
+ const results = result.results.map(r => {
493
+ let value = r.content;
494
+ try {
495
+ value = JSON.parse(r.content);
496
+ }
497
+ catch {
498
+ // Keep as string
499
+ }
500
+ return {
501
+ key: r.key,
502
+ namespace: r.namespace,
503
+ value,
504
+ similarity: r.score,
505
+ };
506
+ });
507
+ return {
508
+ query,
509
+ results,
510
+ total: results.length,
511
+ searchTime: `${duration.toFixed(2)}ms`,
512
+ backend: 'HNSW + sql.js',
513
+ ...(smartFallbackReason ? { smartFallback: smartFallbackReason } : {}),
514
+ };
515
+ }
516
+ catch (error) {
517
+ return {
518
+ query,
519
+ results: [],
520
+ total: 0,
521
+ error: error instanceof Error ? error.message : 'Unknown error',
522
+ };
523
+ }
524
+ },
525
+ },
526
+ {
527
+ name: 'memory_delete',
528
+ description: 'Remove a stored memory entry by exact (namespace, key). Use when a previously stored decision is invalidated or contains stale data. No native equivalent — Write to a file does not affect the .swarm/memory.db SQLite store.',
529
+ category: 'memory',
530
+ inputSchema: {
531
+ type: 'object',
532
+ properties: {
533
+ key: { type: 'string', description: 'Memory key' },
534
+ namespace: { type: 'string', description: 'Namespace (default: "default")' },
535
+ },
536
+ required: ['key'],
537
+ },
538
+ handler: async (input) => {
539
+ await ensureInitialized();
540
+ const { deleteEntry } = await getMemoryFunctions();
541
+ const key = input.key;
542
+ const namespace = input.namespace || 'default';
543
+ validateMemoryInput(key, undefined, undefined, namespace);
544
+ try {
545
+ const result = await deleteEntry({ key, namespace });
546
+ return {
547
+ success: result.deleted,
548
+ key,
549
+ namespace,
550
+ deleted: result.deleted,
551
+ hnswIndexInvalidated: result.deleted,
552
+ backend: 'sql.js + HNSW',
553
+ };
554
+ }
555
+ catch (error) {
556
+ return {
557
+ success: false,
558
+ key,
559
+ namespace,
560
+ deleted: false,
561
+ error: error instanceof Error ? error.message : 'Unknown error',
562
+ };
563
+ }
564
+ },
565
+ },
566
+ {
567
+ name: 'memory_list',
568
+ description: 'Enumerate stored memory entries (optionally filtered by namespace/tags) without semantic search. Use when native Glob is wrong because the entries are not files (they live in .swarm/memory.db). For inspection / audit / "what is in my memory" — pair with memory_search for retrieval-by-meaning.',
569
+ category: 'memory',
570
+ inputSchema: {
571
+ type: 'object',
572
+ properties: {
573
+ namespace: { type: 'string', description: 'Filter by namespace' },
574
+ limit: { type: 'number', description: 'Maximum results (default: 50)' },
575
+ offset: { type: 'number', description: 'Offset for pagination (default: 0)' },
576
+ },
577
+ },
578
+ handler: async (input) => {
579
+ await ensureInitialized();
580
+ const { listEntries } = await getMemoryFunctions();
581
+ const namespace = input.namespace;
582
+ const limit = input.limit || 50;
583
+ const offset = input.offset || 0;
584
+ if (namespace) {
585
+ const vNs = validateIdentifier(namespace, 'namespace');
586
+ if (!vNs.valid)
587
+ throw new Error(vNs.error);
588
+ }
589
+ try {
590
+ const result = await listEntries({
591
+ namespace,
592
+ limit,
593
+ offset,
594
+ });
595
+ const entries = result.entries.map(e => ({
596
+ key: e.key,
597
+ namespace: e.namespace,
598
+ storedAt: e.createdAt,
599
+ updatedAt: e.updatedAt,
600
+ accessCount: e.accessCount,
601
+ hasEmbedding: e.hasEmbedding,
602
+ size: e.size,
603
+ }));
604
+ return {
605
+ entries,
606
+ total: result.total,
607
+ limit,
608
+ offset,
609
+ backend: 'sql.js + HNSW',
610
+ };
611
+ }
612
+ catch (error) {
613
+ return {
614
+ entries: [],
615
+ total: 0,
616
+ limit,
617
+ offset,
618
+ error: error instanceof Error ? error.message : 'Unknown error',
619
+ };
620
+ }
621
+ },
622
+ },
623
+ {
624
+ name: 'memory_stats',
625
+ description: 'Get memory storage statistics including HNSW index status Use when native Read/Write is wrong because you need (a) cross-session retrieval by semantic similarity (vector embeddings) not by file path, (b) namespacing across projects without managing directory layout, or (c) the .swarm/memory.db audit trail. For one-shot file I/O, native Read/Write is fine.',
626
+ category: 'memory',
627
+ inputSchema: {
628
+ type: 'object',
629
+ properties: {},
630
+ },
631
+ handler: async () => {
632
+ await ensureInitialized();
633
+ const { checkMemoryInitialization, listEntries } = await getMemoryFunctions();
634
+ try {
635
+ const status = await checkMemoryInitialization();
636
+ const allEntries = await listEntries({ limit: 100000 });
637
+ // Count by namespace
638
+ const namespaces = {};
639
+ let withEmbeddings = 0;
640
+ for (const entry of allEntries.entries) {
641
+ namespaces[entry.namespace] = (namespaces[entry.namespace] || 0) + 1;
642
+ if (entry.hasEmbedding)
643
+ withEmbeddings++;
644
+ }
645
+ return {
646
+ initialized: status.initialized,
647
+ totalEntries: allEntries.total,
648
+ entriesWithEmbeddings: withEmbeddings,
649
+ embeddingCoverage: allEntries.total > 0
650
+ ? `${((withEmbeddings / allEntries.total) * 100).toFixed(1)}%`
651
+ : '0%',
652
+ namespaces,
653
+ backend: 'sql.js + HNSW',
654
+ version: status.version || '3.0.0',
655
+ features: status.features || {
656
+ vectorEmbeddings: true,
657
+ hnswIndex: true,
658
+ semanticSearch: true,
659
+ },
660
+ };
661
+ }
662
+ catch (error) {
663
+ return {
664
+ initialized: false,
665
+ error: error instanceof Error ? error.message : 'Unknown error',
666
+ };
667
+ }
668
+ },
669
+ },
670
+ {
671
+ name: 'memory_migrate',
672
+ description: 'Manually trigger migration from legacy JSON store to sql.js Use when native Read/Write is wrong because you need (a) cross-session retrieval by semantic similarity (vector embeddings) not by file path, (b) namespacing across projects without managing directory layout, or (c) the .swarm/memory.db audit trail. For one-shot file I/O, native Read/Write is fine.',
673
+ category: 'memory',
674
+ inputSchema: {
675
+ type: 'object',
676
+ properties: {
677
+ force: { type: 'boolean', description: 'Force re-migration even if already done' },
678
+ },
679
+ },
680
+ handler: async (input) => {
681
+ const force = input.force;
682
+ // Remove migration marker if forcing
683
+ if (force) {
684
+ const markerPath = getMigrationMarkerPath();
685
+ if (existsSync(markerPath)) {
686
+ unlinkSync(markerPath);
687
+ }
688
+ }
689
+ // Check for legacy data
690
+ const legacyStore = loadLegacyStore();
691
+ if (!legacyStore || Object.keys(legacyStore.entries).length === 0) {
692
+ return {
693
+ success: true,
694
+ message: 'No legacy data to migrate',
695
+ migrated: 0,
696
+ };
697
+ }
698
+ // Run migration via ensureInitialized
699
+ await ensureInitialized();
700
+ return {
701
+ success: true,
702
+ message: 'Migration completed',
703
+ migrated: Object.keys(legacyStore.entries).length,
704
+ backend: 'sql.js + HNSW',
705
+ };
706
+ },
707
+ },
708
+ // ===== Claude Code Memory Bridge Tools =====
709
+ {
710
+ name: 'memory_import_claude',
711
+ description: 'Import Claude Code auto-memory files into AgentDB with ONNX vector embeddings. Reads ~/.claude/projects/*/memory/*.md files, parses YAML frontmatter, splits into sections, and stores with 384-dim embeddings for semantic search. Use allProjects=true to import from ALL Claude projects. Pass projectPath to override cwd-based detection (#1883 — required when Ruflo runs in WSL but Claude Code is on Windows). Pass excludeFilePatterns (glob list) or excludeFiles (absolute path list) to skip voice-load-bearing, PII, or persona-restricted files (#1937). Use when native Read/Write is wrong because you need (a) cross-session retrieval by semantic similarity (vector embeddings) not by file path, (b) namespacing across projects without managing directory layout, or (c) the .swarm/memory.db audit trail. For one-shot file I/O, native Read/Write is fine.',
712
+ category: 'memory',
713
+ inputSchema: {
714
+ type: 'object',
715
+ properties: {
716
+ allProjects: { type: 'boolean', description: 'Import from all Claude projects (default: current project only)' },
717
+ namespace: { type: 'string', description: 'Target namespace (default: "claude-memories")' },
718
+ projectPath: { type: 'string', description: '#1883 — explicit project path to hash, used when cwd does not match Claude Code\'s view (e.g. WSL bridge to Windows host). Pass the canonical project root as Claude Code sees it.' },
719
+ excludeFilePatterns: {
720
+ type: 'array',
721
+ items: { type: 'string' },
722
+ description: '#1937 — glob patterns matched against the absolute file path. Files matching ANY pattern are skipped. Supports `*` (any chars within a path segment), `**` (any chars including separators), and `?` (single char). Examples: `**/voice-*.md`, `**/persona-*.md`. Combine with excludeFiles for explicit paths.',
723
+ },
724
+ excludeFiles: {
725
+ type: 'array',
726
+ items: { type: 'string' },
727
+ description: '#1937 — absolute file paths to skip verbatim. Faster than a pattern when the list is known ahead of time (operator captured baselines). Combine with excludeFilePatterns.',
728
+ },
729
+ },
730
+ },
731
+ handler: async (input) => {
732
+ await ensureInitialized();
733
+ const { storeEntry } = await getMemoryFunctions();
734
+ const ns = input.namespace || 'claude-memories';
735
+ if (input.namespace) {
736
+ const vNs = validateIdentifier(ns, 'namespace');
737
+ if (!vNs.valid)
738
+ return { success: false, imported: 0, error: vNs.error };
739
+ }
740
+ const allProjects = input.allProjects;
741
+ const projectPathOverride = input.projectPath;
742
+ const claudeProjectsDir = join(homedir(), '.claude', 'projects');
743
+ // #1937 — voice-fidelity / persona-restricted exclusion.
744
+ const excludeFilePatterns = Array.isArray(input.excludeFilePatterns) ? input.excludeFilePatterns : [];
745
+ const excludeFilesList = Array.isArray(input.excludeFiles) ? new Set(input.excludeFiles) : new Set();
746
+ const excludeRegexes = excludeFilePatterns.map(globToRegex);
747
+ const isExcluded = (absPath) => {
748
+ if (excludeFilesList.has(absPath))
749
+ return true;
750
+ return excludeRegexes.some(re => re.test(absPath));
751
+ };
752
+ // Find memory files
753
+ const memoryFiles = [];
754
+ let excludedByPattern = 0;
755
+ if (allProjects) {
756
+ // Scan all projects
757
+ if (existsSync(claudeProjectsDir)) {
758
+ try {
759
+ for (const project of readdirSync(claudeProjectsDir, { withFileTypes: true })) {
760
+ if (!project.isDirectory())
761
+ continue;
762
+ const memDir = join(claudeProjectsDir, project.name, 'memory');
763
+ if (!existsSync(memDir))
764
+ continue;
765
+ for (const file of readdirSync(memDir).filter((f) => f.endsWith('.md'))) {
766
+ const absPath = join(memDir, file);
767
+ if (isExcluded(absPath)) {
768
+ excludedByPattern++;
769
+ continue;
770
+ }
771
+ memoryFiles.push({ path: absPath, project: project.name, file });
772
+ }
773
+ }
774
+ }
775
+ catch { /* scan error */ }
776
+ }
777
+ }
778
+ else {
779
+ // #1883 — current project: try multiple candidate hashes (POSIX, WSL-translated,
780
+ // leading-dash-stripped, space-replaced). Caller can pass projectPath to override.
781
+ const resolved = resolveProjectMemoryDir(claudeProjectsDir, projectPathOverride);
782
+ if (resolved) {
783
+ try {
784
+ for (const file of readdirSync(resolved.memDir).filter((f) => f.endsWith('.md'))) {
785
+ const absPath = join(resolved.memDir, file);
786
+ if (isExcluded(absPath)) {
787
+ excludedByPattern++;
788
+ continue;
789
+ }
790
+ memoryFiles.push({ path: absPath, project: resolved.projectHash, file });
791
+ }
792
+ }
793
+ catch { /* scan error */ }
794
+ }
795
+ }
796
+ if (memoryFiles.length === 0) {
797
+ return { success: true, imported: 0, message: 'No Claude memory files found' };
798
+ }
799
+ let imported = 0;
800
+ let skipped = 0;
801
+ // #1791.8 — Claude Code's `~/.claude/projects/` accumulates historical
802
+ // project_id directories (truncated forms, sandbox cwds, renamed
803
+ // workspaces) that all contain copies of the same memory files. The
804
+ // previous import indexed each copy under a different `project_id`
805
+ // prefix, producing 5–8x duplication on long-lived homes. Dedupe by
806
+ // file content hash so the same memory is imported once even if it
807
+ // appears under several project directories.
808
+ const seenContentHashes = new Set();
809
+ let duplicatesSkipped = 0;
810
+ const projects = new Set();
811
+ for (const memFile of memoryFiles) {
812
+ projects.add(memFile.project);
813
+ try {
814
+ const content = readFileSync(memFile.path, 'utf-8');
815
+ // #1791.8 — Skip if we've already imported this exact content under
816
+ // a different project_id directory.
817
+ const contentHash = createHash('sha256').update(content).digest('hex').slice(0, 16);
818
+ if (seenContentHashes.has(contentHash)) {
819
+ duplicatesSkipped++;
820
+ continue;
821
+ }
822
+ seenContentHashes.add(contentHash);
823
+ const frontmatterMatch = content.match(/^---\n([\s\S]*?)\n---\n([\s\S]*)$/);
824
+ let name = memFile.file.replace('.md', '');
825
+ let body = content;
826
+ if (frontmatterMatch) {
827
+ const yaml = frontmatterMatch[1];
828
+ body = frontmatterMatch[2].trim();
829
+ const nameMatch = yaml.match(/^name:\s*(.+)$/m);
830
+ if (nameMatch)
831
+ name = nameMatch[1].trim();
832
+ }
833
+ // Split into sections for granular search
834
+ const sections = body.split(/^(?=## )/m).filter(s => s.trim().length > 20);
835
+ if (sections.length === 0 && body.length > 10) {
836
+ // #1884 — sanitize key so memory_delete can later remove it. Without
837
+ // this, dangerous chars from frontmatter `name` strand the key.
838
+ const key = sanitizeMemoryKey(`claude:${memFile.project}:${name}`);
839
+ await storeEntry({ key, value: body.slice(0, 4096), namespace: ns, generateEmbeddingFlag: true });
840
+ imported++;
841
+ }
842
+ else {
843
+ for (const section of sections) {
844
+ const titleMatch = section.match(/^##\s+(.+)/);
845
+ const sectionTitle = titleMatch ? titleMatch[1].trim() : name;
846
+ const sectionBody = section.replace(/^##\s+.+\n/, '').trim();
847
+ if (sectionBody.length < 10)
848
+ continue;
849
+ // #1884 — sanitize so any dangerous chars in the heading don't
850
+ // produce keys memory_delete will reject.
851
+ const key = sanitizeMemoryKey(`claude:${memFile.project}:${name}:${sectionTitle.slice(0, 50)}`);
852
+ await storeEntry({ key, value: sectionBody.slice(0, 4096), namespace: ns, generateEmbeddingFlag: true });
853
+ imported++;
854
+ }
855
+ }
856
+ }
857
+ catch {
858
+ skipped++;
859
+ }
860
+ }
861
+ return {
862
+ success: true,
863
+ imported,
864
+ skipped,
865
+ duplicatesSkipped,
866
+ excludedByPattern,
867
+ files: memoryFiles.length,
868
+ projects: projects.size,
869
+ namespace: ns,
870
+ embedding: 'ONNX all-MiniLM-L6-v2 (384-dim)',
871
+ };
872
+ },
873
+ },
874
+ {
875
+ name: 'memory_bridge_status',
876
+ description: 'Show Claude Code memory bridge status — AgentDB vectors, SONA learning, intelligence patterns, and connection health. Use when native Read/Write is wrong because you need (a) cross-session retrieval by semantic similarity (vector embeddings) not by file path, (b) namespacing across projects without managing directory layout, or (c) the .swarm/memory.db audit trail. For one-shot file I/O, native Read/Write is fine.',
877
+ category: 'memory',
878
+ inputSchema: { type: 'object', properties: {} },
879
+ handler: async () => {
880
+ await ensureInitialized();
881
+ // Count Claude memory files
882
+ const claudeProjectsDir = join(homedir(), '.claude', 'projects');
883
+ let claudeFiles = 0;
884
+ let claudeProjects = 0;
885
+ if (existsSync(claudeProjectsDir)) {
886
+ try {
887
+ for (const project of readdirSync(claudeProjectsDir, { withFileTypes: true })) {
888
+ if (!project.isDirectory())
889
+ continue;
890
+ const memDir = join(claudeProjectsDir, project.name, 'memory');
891
+ if (!existsSync(memDir))
892
+ continue;
893
+ const files = readdirSync(memDir).filter((f) => f.endsWith('.md'));
894
+ if (files.length > 0) {
895
+ claudeProjects++;
896
+ claudeFiles += files.length;
897
+ }
898
+ }
899
+ }
900
+ catch { /* ignore */ }
901
+ }
902
+ // AgentDB status
903
+ // #1940: previously used `allEntries.entries.length` for the totals,
904
+ // but `listEntries({})` returns the first 20 entries with a separate
905
+ // `total` field for the full row count. So `memory_bridge_status`
906
+ // reported `totalEntries: 0`...20 even when the DB had hundreds of
907
+ // rows. Use `.total` for the count, and surface the namespaces with
908
+ // entries so the report matches what's actually in the store.
909
+ let agentdbEntries = 0;
910
+ let claudeMemoryEntries = 0;
911
+ const namespaceCounts = {};
912
+ try {
913
+ const { listEntries } = await getMemoryFunctions();
914
+ const allEntries = await listEntries({});
915
+ agentdbEntries = allEntries?.total
916
+ ?? allEntries?.entries?.length ?? 0;
917
+ const claudeEntries = await listEntries({ namespace: 'claude-memories' });
918
+ claudeMemoryEntries = claudeEntries?.total
919
+ ?? claudeEntries?.entries?.length ?? 0;
920
+ // Per-namespace counts for the namespaces the reporter referenced
921
+ // (#1940). Best-effort — a namespace with 0 entries is omitted.
922
+ for (const ns of ['default', 'patterns', 'claude-memories', 'auto-memory', 'tasks', 'feedback', 'pretrain']) {
923
+ try {
924
+ const r = await listEntries({ namespace: ns });
925
+ const t = r?.total ?? r?.entries?.length ?? 0;
926
+ if (t > 0)
927
+ namespaceCounts[ns] = t;
928
+ }
929
+ catch { /* skip per-namespace failure */ }
930
+ }
931
+ }
932
+ catch { /* ignore */ }
933
+ // Intelligence status
934
+ let intelligence = { sonaEnabled: false, patternsLearned: 0, trajectoriesRecorded: 0 };
935
+ try {
936
+ const int = await import('../memory/intelligence.js');
937
+ const stats = int.getIntelligenceStats?.();
938
+ if (stats)
939
+ intelligence = { sonaEnabled: stats.sonaEnabled, patternsLearned: stats.patternsLearned, trajectoriesRecorded: stats.trajectoriesRecorded };
940
+ }
941
+ catch { /* not initialized */ }
942
+ return {
943
+ claudeCode: { memoryFiles: claudeFiles, projects: claudeProjects },
944
+ agentdb: { totalEntries: agentdbEntries, claudeMemoryEntries, namespaces: namespaceCounts, backend: 'sql.js + ONNX' },
945
+ intelligence,
946
+ // #1940: report 'connected' whenever ANY namespace has imported
947
+ // content, not just `claude-memories` — the bridge can be in active
948
+ // use from other import paths (e.g. plugin namespaces, task memory).
949
+ bridge: { status: agentdbEntries > 0 ? 'connected' : 'not-synced', embedding: 'all-MiniLM-L6-v2 (384-dim)' },
950
+ };
951
+ },
952
+ },
953
+ {
954
+ name: 'memory_search_unified',
955
+ description: 'Search across both Claude Code memories and AgentDB entries using semantic vector similarity. Returns merged, deduplicated results from all namespaces. Use when native Read/Write is wrong because you need (a) cross-session retrieval by semantic similarity (vector embeddings) not by file path, (b) namespacing across projects without managing directory layout, or (c) the .swarm/memory.db audit trail. For one-shot file I/O, native Read/Write is fine.',
956
+ category: 'memory',
957
+ inputSchema: {
958
+ type: 'object',
959
+ properties: {
960
+ query: { type: 'string', description: 'Search query (natural language)' },
961
+ limit: { type: 'number', description: 'Max results (default: 10)' },
962
+ namespace: { type: 'string', description: 'Filter to namespace (omit for all)' },
963
+ },
964
+ required: ['query'],
965
+ },
966
+ handler: async (input) => {
967
+ await ensureInitialized();
968
+ const { searchEntries } = await getMemoryFunctions();
969
+ validateMemoryInput(undefined, undefined, input.query);
970
+ const query = input.query;
971
+ const limit = input.limit ?? 10;
972
+ const ns = input.namespace;
973
+ if (ns) {
974
+ const vNs = validateIdentifier(ns, 'namespace');
975
+ if (!vNs.valid)
976
+ return { success: false, query, results: [], total: 0, error: vNs.error };
977
+ }
978
+ // Search all namespaces unless filtered
979
+ const namespaces = ns ? [ns] : ['default', 'claude-memories', 'auto-memory', 'patterns', 'tasks', 'feedback'];
980
+ const allResults = [];
981
+ for (const searchNs of namespaces) {
982
+ try {
983
+ const r = await searchEntries({ query, namespace: searchNs, limit: limit * 2 });
984
+ if (r?.results) {
985
+ for (const entry of r.results) {
986
+ allResults.push({
987
+ key: entry.key || entry.id || '',
988
+ content: (entry.content || entry.value || '').toString().slice(0, 200),
989
+ score: entry.score || 0,
990
+ namespace: searchNs,
991
+ source: searchNs === 'claude-memories' ? 'claude-code' : searchNs === 'auto-memory' ? 'auto-memory' : 'agentdb',
992
+ });
993
+ }
994
+ }
995
+ }
996
+ catch { /* namespace may not exist */ }
997
+ }
998
+ // Sort by score, deduplicate by key, take top N
999
+ allResults.sort((a, b) => b.score - a.score);
1000
+ const seen = new Set();
1001
+ const deduplicated = allResults.filter(r => {
1002
+ if (seen.has(r.key))
1003
+ return false;
1004
+ seen.add(r.key);
1005
+ return true;
1006
+ }).slice(0, limit);
1007
+ return {
1008
+ success: true,
1009
+ query,
1010
+ results: deduplicated,
1011
+ total: deduplicated.length,
1012
+ searchedNamespaces: namespaces,
1013
+ searchTime: Date.now(),
1014
+ };
1015
+ },
1016
+ },
1017
+ {
1018
+ // #1916: `ruflo status memory` (the detailed view) referenced an
1019
+ // unregistered `memory_detailed-stats` tool. memory_stats returns a
1020
+ // different shape; this returns what the CLI renders.
1021
+ name: 'memory_detailed-stats',
1022
+ description: 'Detailed memory-store report — backend, entry count, total bytes, per-namespace counts, and (placeholder) perf metrics. Use when native Read/Glob is wrong because the data lives in .swarm/memory.db, not files, and you want an aggregate health view. For a quick count use memory_stats; for "what is in memory" use memory_list.',
1023
+ category: 'memory',
1024
+ inputSchema: { type: 'object', properties: {} },
1025
+ handler: async () => {
1026
+ await ensureInitialized();
1027
+ const { listEntries } = await getMemoryFunctions();
1028
+ const all = await listEntries({ limit: 100000 });
1029
+ const nsCounts = {};
1030
+ let bytes = 0;
1031
+ for (const e of all.entries) {
1032
+ nsCounts[e.namespace] = (nsCounts[e.namespace] || 0) + 1;
1033
+ bytes += e.size || 0;
1034
+ }
1035
+ return {
1036
+ backend: 'sql.js + HNSW',
1037
+ entries: all.total ?? all.entries.length,
1038
+ size: bytes,
1039
+ namespaces: Object.entries(nsCounts).map(([name, entries]) => ({ name, entries })),
1040
+ performance: { avgSearchTime: 0, avgWriteTime: 0, cacheHitRate: 0, hnswEnabled: true },
1041
+ note: 'perf metrics are placeholders; HNSW is always enabled in the sql.js backend',
1042
+ };
1043
+ },
1044
+ },
1045
+ {
1046
+ // #1916: `ruflo memory cleanup` referenced an unregistered `memory_cleanup`
1047
+ // tool. Removes entries whose TTL has expired. Defaults to a dry run —
1048
+ // pass dryRun:false to actually delete.
1049
+ name: 'memory_cleanup',
1050
+ description: 'Prune memory entries whose TTL has expired (dry run by default; pass dryRun:false to delete). Use when native rm is wrong because the entries are rows in .swarm/memory.db, not files. For removing a specific known key use memory_delete. Stale/low-quality pruning is delegated to the agentdb consolidation curator (#1916 follow-up).',
1051
+ category: 'memory',
1052
+ inputSchema: {
1053
+ type: 'object',
1054
+ properties: {
1055
+ dryRun: { type: 'boolean', description: 'Only report candidates, do not delete (default true)' },
1056
+ namespace: { type: 'string', description: 'Limit cleanup to one namespace' },
1057
+ },
1058
+ },
1059
+ handler: async (input) => {
1060
+ await ensureInitialized();
1061
+ const { listEntries, deleteEntry } = await getMemoryFunctions();
1062
+ const dryRun = input.dryRun !== false; // default true
1063
+ const namespace = input.namespace ? String(input.namespace) : undefined;
1064
+ if (namespace) {
1065
+ const v = validateIdentifier(namespace, 'namespace');
1066
+ if (!v.valid)
1067
+ throw new Error(v.error);
1068
+ }
1069
+ const all = await listEntries({ limit: 100000, namespace });
1070
+ const now = Date.now();
1071
+ const expired = all.entries.filter(e => {
1072
+ const exp = e.expiresAt;
1073
+ if (!exp)
1074
+ return false;
1075
+ const t = typeof exp === 'number' ? exp : Date.parse(String(exp));
1076
+ return Number.isFinite(t) && t < now;
1077
+ });
1078
+ let freedBytes = 0;
1079
+ let deleted = 0;
1080
+ if (!dryRun) {
1081
+ for (const e of expired) {
1082
+ try {
1083
+ await deleteEntry({ key: e.key, namespace: e.namespace });
1084
+ freedBytes += e.size || 0;
1085
+ deleted++;
1086
+ }
1087
+ catch { /* ignore individual delete errors */ }
1088
+ }
1089
+ }
1090
+ else {
1091
+ freedBytes = expired.reduce((s, e) => s + (e.size || 0), 0);
1092
+ }
1093
+ return {
1094
+ dryRun,
1095
+ candidates: { expired: expired.length, stale: 0, lowQuality: 0, total: expired.length },
1096
+ deleted: { entries: dryRun ? 0 : deleted, vectors: 0, patterns: 0 },
1097
+ freed: { bytes: freedBytes },
1098
+ note: dryRun ? 'dry run — re-run with dryRun:false to delete' : undefined,
1099
+ };
1100
+ },
1101
+ },
1102
+ {
1103
+ // #1916: `ruflo memory compress` referenced an unregistered tool. The
1104
+ // sql.js backend has no on-disk compression; this reports current sizes.
1105
+ name: 'memory_compress',
1106
+ description: 'Report memory-store size breakdown (the sql.js backend has no on-disk compression — entries are already stored compactly; quantized embeddings via RaBitQ are configured elsewhere). Use when native du is wrong because the data is in .swarm/memory.db. For pruning expired entries use memory_cleanup.',
1107
+ category: 'memory',
1108
+ inputSchema: { type: 'object', properties: {} },
1109
+ handler: async () => {
1110
+ await ensureInitialized();
1111
+ const { listEntries } = await getMemoryFunctions();
1112
+ const all = await listEntries({ limit: 100000 });
1113
+ const bytes = all.entries.reduce((s, e) => s + (e.size || 0), 0);
1114
+ const human = `${bytes}B`;
1115
+ const sizes = { totalSize: human, vectorsSize: 'n/a', textSize: human, patternsSize: 'n/a', indexSize: 'n/a' };
1116
+ return {
1117
+ before: sizes,
1118
+ after: sizes,
1119
+ compression: { ratio: 1, savedBytes: 0, method: 'none' },
1120
+ note: 'sql.js backend has no on-disk compression; nothing to compress. (RaBitQ embedding quantization is a separate feature.)',
1121
+ };
1122
+ },
1123
+ },
1124
+ {
1125
+ // #1916: `ruflo memory export -o <file>` referenced an unregistered tool.
1126
+ // Dumps entry metadata (and values when the backend returns them) to JSON.
1127
+ name: 'memory_export',
1128
+ description: 'Export memory entries to a JSON file (keys, namespaces, timestamps, and values when available). Use when native Write is wrong because the data is rows in .swarm/memory.db, not a file you can copy. For ingesting an export elsewhere use memory_import. (CSV output and embedding-vector export are follow-ups.)',
1129
+ category: 'memory',
1130
+ inputSchema: {
1131
+ type: 'object',
1132
+ properties: {
1133
+ outputPath: { type: 'string', description: 'File path to write the JSON export to' },
1134
+ format: { type: 'string', enum: ['json', 'csv'], description: 'Export format (csv falls back to json today)' },
1135
+ namespace: { type: 'string', description: 'Limit export to one namespace' },
1136
+ includeVectors: { type: 'boolean', description: 'Include embedding vectors (advisory — not exported yet)' },
1137
+ },
1138
+ required: ['outputPath'],
1139
+ },
1140
+ handler: async (input) => {
1141
+ await ensureInitialized();
1142
+ const { listEntries } = await getMemoryFunctions();
1143
+ const outputPath = String(input.outputPath ?? '');
1144
+ if (!outputPath)
1145
+ return { error: 'outputPath is required' };
1146
+ const namespace = input.namespace ? String(input.namespace) : undefined;
1147
+ if (namespace) {
1148
+ const v = validateIdentifier(namespace, 'namespace');
1149
+ if (!v.valid)
1150
+ throw new Error(v.error);
1151
+ }
1152
+ const all = await listEntries({ limit: 100000, namespace });
1153
+ const payload = {
1154
+ schema: 'ruflo-memory-export/v1',
1155
+ exportedAt: new Date().toISOString(),
1156
+ namespace: namespace ?? null,
1157
+ count: all.entries.length,
1158
+ entries: all.entries.map(e => ({
1159
+ key: e.key, namespace: e.namespace, value: e.value ?? null,
1160
+ createdAt: e.createdAt, updatedAt: e.updatedAt, accessCount: e.accessCount, hasEmbedding: e.hasEmbedding, size: e.size,
1161
+ })),
1162
+ };
1163
+ try {
1164
+ writeFileSync(outputPath, JSON.stringify(payload, null, 2), 'utf-8');
1165
+ }
1166
+ catch (e) {
1167
+ return { error: `Could not write ${outputPath}: ${e.message}` };
1168
+ }
1169
+ const vectorsWithEmb = all.entries.filter(e => e.hasEmbedding).length;
1170
+ return {
1171
+ outputPath,
1172
+ format: input.format || 'json',
1173
+ exported: { entries: all.entries.length, vectors: vectorsWithEmb, patterns: 0 },
1174
+ fileSize: `${Buffer.byteLength(JSON.stringify(payload))}B`,
1175
+ note: input.format === 'csv' ? 'CSV not implemented yet — wrote JSON' : undefined,
1176
+ };
1177
+ },
1178
+ },
1179
+ {
1180
+ // #1916: `ruflo memory import <file>` referenced an unregistered tool.
1181
+ // Reads a ruflo-memory-export JSON and re-stores each entry.
1182
+ name: 'memory_import',
1183
+ description: 'Import memory entries from a JSON export file (produced by memory_export) into .swarm/memory.db, re-embedding values. Use when native Read is wrong because the data must be re-stored as memory rows (with new embeddings), not just read. For importing Claude Code\'s own memory files use memory_import_claude. Pair with memory_export on the source.',
1184
+ category: 'memory',
1185
+ inputSchema: {
1186
+ type: 'object',
1187
+ properties: {
1188
+ inputPath: { type: 'string', description: 'Path to the JSON export file' },
1189
+ merge: { type: 'boolean', description: 'Merge into existing entries (upsert) vs. fail on conflict (default true)' },
1190
+ namespace: { type: 'string', description: 'Override the namespace for all imported entries' },
1191
+ },
1192
+ required: ['inputPath'],
1193
+ },
1194
+ handler: async (input) => {
1195
+ await ensureInitialized();
1196
+ const { storeEntry } = await getMemoryFunctions();
1197
+ const t0 = Date.now();
1198
+ const inputPath = String(input.inputPath ?? '');
1199
+ if (!inputPath || !existsSync(inputPath))
1200
+ return { error: `File not found: ${inputPath || '(empty)'}` };
1201
+ let doc;
1202
+ try {
1203
+ doc = JSON.parse(readFileSync(inputPath, 'utf-8'));
1204
+ }
1205
+ catch (e) {
1206
+ return { error: `Invalid export JSON: ${e.message}` };
1207
+ }
1208
+ const entries = Array.isArray(doc.entries) ? doc.entries : [];
1209
+ const nsOverride = input.namespace ? String(input.namespace) : undefined;
1210
+ if (nsOverride) {
1211
+ const v = validateIdentifier(nsOverride, 'namespace');
1212
+ if (!v.valid)
1213
+ throw new Error(v.error);
1214
+ }
1215
+ let imported = 0;
1216
+ let skipped = 0;
1217
+ for (const e of entries) {
1218
+ if (!e || typeof e.key !== 'string') {
1219
+ skipped++;
1220
+ continue;
1221
+ }
1222
+ const value = typeof e.value === 'string' ? e.value : JSON.stringify(e.value ?? null);
1223
+ try {
1224
+ await storeEntry({ key: e.key, value, namespace: nsOverride ?? e.namespace ?? 'default', upsert: input.merge !== false });
1225
+ imported++;
1226
+ }
1227
+ catch {
1228
+ skipped++;
1229
+ }
1230
+ }
1231
+ return {
1232
+ inputPath,
1233
+ imported: { entries: imported, vectors: 0, patterns: 0 },
1234
+ skipped,
1235
+ duration: Date.now() - t0,
1236
+ };
1237
+ },
1238
+ },
1239
+ ];
1240
+ //# sourceMappingURL=memory-tools.js.map