@aics/vole-app 3.4.4 → 3.6.0

package/es/aics-image-viewer/shared/utils/firebase/index.js

@@ -1,109 +0,0 @@
-function _typeof(o) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (o) { return typeof o; } : function (o) { return o && "function" == typeof Symbol && o.constructor === Symbol && o !== Symbol.prototype ? "symbol" : typeof o; }, _typeof(o); }
-function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
-function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
-function _defineProperties(e, r) { for (var t = 0; t < r.length; t++) { var o = r[t]; o.enumerable = o.enumerable || !1, o.configurable = !0, "value" in o && (o.writable = !0), Object.defineProperty(e, _toPropertyKey(o.key), o); } }
-function _createClass(e, r, t) { return r && _defineProperties(e.prototype, r), t && _defineProperties(e, t), Object.defineProperty(e, "prototype", { writable: !1 }), e; }
-function _classCallCheck(a, n) { if (!(a instanceof n)) throw new TypeError("Cannot call a class as a function"); }
-function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
-function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == _typeof(i) ? i : i + ""; }
-function _toPrimitive(t, r) { if ("object" != _typeof(t) || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != _typeof(i)) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
-// TODO: These types are shared with Cell Feature Explorer. Can they be moved to
-// a shared package?
-
-function isDevOrStagingSite(host) {
-  // first condition is for testing with no client
-  return !host || host.includes("localhost") || host.includes("staging") || host.includes("stg");
-}
-var FirebaseRequest = /*#__PURE__*/_createClass(
-// TODO: These properties are private and unused. Remove?
-
-function FirebaseRequest(firestore) {
-  var _this = this;
-  _classCallCheck(this, FirebaseRequest);
-  _defineProperty(this, "getDoc", function (docPath) {
-    return _this.firestore.doc(docPath).get();
-  });
-  _defineProperty(this, "getAvailableDatasets", function () {
-    return _this.firestore.collection("dataset-descriptions").get().then(function (snapShot) {
-      var datasets = [];
-      snapShot.forEach(function (doc) {
-        var metadata = doc.data();
-        /** if running the site in a local development env or on staging.cfe.allencell.org
-         * include all cards, otherwise, only include cards with a production flag.
-         * this is based on hostname instead of a build time variable so we don't
-         * need a separate build for staging and production
-         */
-
-        if (isDevOrStagingSite(location.hostname)) {
-          datasets.push(metadata);
-        } else if (metadata.production) {
-          datasets.push(metadata);
-        }
-      });
-      return datasets;
-    });
-  });
-  _defineProperty(this, "setCollectionRef", function (id) {
-    _this.collectionRef = _this.firestore.collection("cfe-datasets").doc(id);
-  });
-  _defineProperty(this, "getManifest", function (ref) {
-    return _this.firestore.doc(ref).get().then(function (manifestDoc) {
-      return manifestDoc.data();
-    });
-  });
-  _defineProperty(this, "selectDataset", function (ref) {
-    return _this.getManifest(ref).then(function (data) {
-      _this.featuresDataPath = data.featuresDataPath;
-      _this.thumbnailRoot = data.thumbnailRoot;
-      _this.downloadRoot = data.downloadRoot;
-      _this.volumeViewerDataRoot = data.volumeViewerDataRoot;
-      _this.featuresDisplayOrder = data.featuresDisplayOrder;
-      _this.cellLineDataPath = data.cellLineDataPath;
-      _this.fileInfoPath = data.fileInfoPath;
-      _this.featuresDataOrder = data.featuresDataOrder;
-      _this.featureDefsPath = data.featureDefsPath;
-      _this.albumPath = data.albumPath;
-      return _objectSpread({}, data);
-    });
-  });
-  _defineProperty(this, "getFileInfoByCellId", function (cellId) {
-    return _this.getDoc("".concat(_this.fileInfoPath, "/").concat(cellId)).then(function (doc) {
-      var data = doc.data();
-      if (!data) {
-        return;
-      }
-      return _objectSpread(_objectSpread({}, data), {}, {
-        CellId: data.CellId.toString(),
-        FOVId: data.FOVId.toString()
-      });
-    });
-  });
-  _defineProperty(this, "getFileInfoByArrayOfCellIds", function (cellIds) {
-    return Promise.all(cellIds.map(function (id) {
-      return _this.getDoc("".concat(_this.fileInfoPath, "/").concat(id)).then(function (doc) {
-        var data = doc.data();
-        if (!data) {
-          return;
-        }
-        return _objectSpread(_objectSpread({}, data), {}, {
-          CellId: data.CellId.toString(),
-          FOVId: data.FOVId.toString()
-        });
-      });
-    }));
-  });
-  this.firestore = firestore;
-  this.featuresDataPath = "";
-  this.cellLineDataPath = "";
-  this.thumbnailRoot = "";
-  this.downloadRoot = "";
-  this.volumeViewerDataRoot = "";
-  this.featuresDisplayOrder = [];
-  this.fileInfoPath = "";
-  this.datasetId = "";
-  this.featuresDataOrder = [];
-  this.albumPath = "";
-  this.featureDefsPath = "";
-  this.collectionRef = firestore.collection("cfe-datasets").doc("v1");
-});
-export default FirebaseRequest;

package/type-declarations/aics-image-viewer/shared/enums.d.ts

@@ -1,15 +0,0 @@
-export declare enum ViewMode {
-    threeD = "3D",
-    xy = "XY",
-    xz = "XZ",
-    yz = "YZ"
-}
-export declare enum RenderMode {
-    volumetric = "volumetric",
-    maxProject = "maxproject",
-    pathTrace = "pathtrace"
-}
-export declare enum ImageType {
-    segmentedCell = "cell",
-    fullField = "fov"
-}

package/type-declarations/aics-image-viewer/shared/utils/firebase/index.d.ts

@@ -1,69 +0,0 @@
-import type { DocumentData, FirebaseFirestore } from "@firebase/firestore-types";
-export interface DatasetMetaData {
-    name: string;
-    version: string;
-    datasets?: {
-        [key: string]: DatasetMetaData;
-    };
-    id: string;
-    description: string;
-    image: string;
-    link?: string;
-    manifest?: string;
-    production?: boolean;
-    userData: {
-        isNew: boolean;
-        inReview: boolean;
-        totalTaggedStructures: number;
-        totalCells: number;
-        totalFOVs: number;
-    };
-}
-export interface FileInfo {
-    CellId: string;
-    CellLineName: string;
-    FOVId: string;
-    structureProteinName: string;
-    fovThumbnailPath: string;
-    fovVolumeviewerPath: string;
-    thumbnailPath: string;
-    volumeviewerPath: string;
-}
-interface ManifestDocumentData extends DocumentData {
-    featuresDataPath: string;
-    cellLineDataPath: string;
-    thumbnailRoot: string;
-    downloadRoot: string;
-    volumeViewerDataRoot: string;
-    featuresDisplayOrder: string[];
-    defaultXAxis: string;
-    defaultYAxis: string;
-    fileInfoPath: string;
-    featuresDataOrder: string[];
-    albumPath: string;
-    featureDefsPath: string;
-}
-declare class FirebaseRequest {
-    private firestore;
-    private fileInfoPath;
-    private collectionRef;
-    private featuresDataPath;
-    private cellLineDataPath;
-    private thumbnailRoot;
-    private downloadRoot;
-    private volumeViewerDataRoot;
-    private featuresDisplayOrder;
-    private datasetId;
-    private featuresDataOrder;
-    private albumPath;
-    private featureDefsPath;
-    constructor(firestore: FirebaseFirestore);
-    private getDoc;
-    getAvailableDatasets: () => Promise<DatasetMetaData[]>;
-    setCollectionRef: (id: string) => void;
-    private getManifest;
-    selectDataset: (ref: string) => Promise<ManifestDocumentData>;
-    getFileInfoByCellId: (cellId: string) => Promise<FileInfo | undefined>;
-    getFileInfoByArrayOfCellIds: (cellIds: string[]) => Promise<(FileInfo | undefined)[]>;
-}
-export default FirebaseRequest;

package/type-declarations/aics-image-viewer/shared/utils/math.d.ts

@@ -1 +0,0 @@
-export declare function clamp(value: number, min: number, max: number): number;