@aics/vole-app 2.13.7 → 2.14.0

package/es/aics-image-viewer/components/App/index.js

@@ -122,6 +122,7 @@ var App = function App(props) {
     onResetChannel = _viewerState$current.onResetChannel;
   var _props = props,
     onControlPanelToggle = _props.onControlPanelToggle,
+    onImageTitleChange = _props.onImageTitleChange,
     metadata = _props.metadata,
     metadataFormatter = _props.metadataFormatter;
   useMemo(function () {
@@ -208,8 +209,9 @@ var App = function App(props) {
         };
       })
     });
+    onImageTitleChange === null || onImageTitleChange === void 0 || onImageTitleChange(newImage.imageInfo.imageInfo.name);
     view3d.updateActiveChannels(newImage);
-  }, [view3d, viewerState]);
+  }, [view3d, viewerState, onImageTitleChange]);
   var onChannelLoaded = useCallback(function (image, channelIndex, isInitialLoad) {
     // TODO this was once a search by name - is that still necessary or will the index always be correct?
     var thisChannelSettings = channelSettings[channelIndex];
@@ -268,10 +270,14 @@ var App = function App(props) {
       view3d.updateActiveChannels(image);
     }
   }, [view3d, channelSettings, maskChannelName, viewerState]);
+  var onError = useCallback(function (error) {
+    showError(error);
+    onImageTitleChange === null || onImageTitleChange === void 0 || onImageTitleChange(undefined);
+  }, [showError, onImageTitleChange]);
   var volume = useVolume(scenes, {
     onCreateImage: onCreateImage,
     onChannelLoaded: onChannelLoaded,
-    onError: showError,
+    onError: onError,
     maskChannelName: maskChannelName
   });
   var image = volume.image,

package/es/aics-image-viewer/components/ViewerStateProvider/ResetStateProvider.js

@@ -132,7 +132,10 @@ var ResetStateProvider = /*#__PURE__*/function () {
       }, this.savedViewerState);
       var newChannelSettings = channelSettings.map(function (_, index) {
         var initialChannelSetting = initializeOneChannelSetting(channelSettings[index].name, index, getDefaultChannelColor(index), _this.savedViewerChannelSettings);
-        return initialChannelSetting;
+        return _objectSpread(_objectSpread({}, initialChannelSetting), {}, {
+          plotMin: channelSettings[index].plotMin,
+          plotMax: channelSettings[index].plotMax
+        });
       });
       this.resetToState(newViewerState, newChannelSettings);
       this.useDefaultViewerChannelSettings = false;

package/es/aics-image-viewer/shared/utils/datatypes.js

@@ -0,0 +1,29 @@
+import { isEqual } from "lodash";
+
+/**
+ * Returns a (shallow) copy of an object with all properties that are
+ * `undefined` removed.
+ */
+export function removeUndefinedProperties(obj) {
+  var result = {};
+  for (var key in obj) {
+    if (obj[key] !== undefined) {
+      result[key] = obj[key];
+    }
+  }
+  return result;
+}
+
+/**
+ * Returns a copy of `obj` where all properties with values that match the properties of `match`
+ * are removed. Matching is determined by deep equality (see `isDeepEqual()`).
+ */
+export function removeMatchingProperties(obj, match) {
+  var result = {};
+  for (var key in obj) {
+    if (!isEqual(obj[key], match[key])) {
+      result[key] = obj[key];
+    }
+  }
+  return result;
+}

package/es/aics-image-viewer/shared/utils/firebase/index.js

@@ -0,0 +1,109 @@
+function _typeof(o) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (o) { return typeof o; } : function (o) { return o && "function" == typeof Symbol && o.constructor === Symbol && o !== Symbol.prototype ? "symbol" : typeof o; }, _typeof(o); }
+function ownKeys(e, r) { var t = Object.keys(e); if (Object.getOwnPropertySymbols) { var o = Object.getOwnPropertySymbols(e); r && (o = o.filter(function (r) { return Object.getOwnPropertyDescriptor(e, r).enumerable; })), t.push.apply(t, o); } return t; }
+function _objectSpread(e) { for (var r = 1; r < arguments.length; r++) { var t = null != arguments[r] ? arguments[r] : {}; r % 2 ? ownKeys(Object(t), !0).forEach(function (r) { _defineProperty(e, r, t[r]); }) : Object.getOwnPropertyDescriptors ? Object.defineProperties(e, Object.getOwnPropertyDescriptors(t)) : ownKeys(Object(t)).forEach(function (r) { Object.defineProperty(e, r, Object.getOwnPropertyDescriptor(t, r)); }); } return e; }
+function _defineProperties(e, r) { for (var t = 0; t < r.length; t++) { var o = r[t]; o.enumerable = o.enumerable || !1, o.configurable = !0, "value" in o && (o.writable = !0), Object.defineProperty(e, _toPropertyKey(o.key), o); } }
+function _createClass(e, r, t) { return r && _defineProperties(e.prototype, r), t && _defineProperties(e, t), Object.defineProperty(e, "prototype", { writable: !1 }), e; }
+function _classCallCheck(a, n) { if (!(a instanceof n)) throw new TypeError("Cannot call a class as a function"); }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == _typeof(i) ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != _typeof(t) || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != _typeof(i)) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+// TODO: These types are shared with Cell Feature Explorer. Can they be moved to
+// a shared package?
+
+function isDevOrStagingSite(host) {
+  // first condition is for testing with no client
+  return !host || host.includes("localhost") || host.includes("staging") || host.includes("stg");
+}
+var FirebaseRequest = /*#__PURE__*/_createClass(
+// TODO: These properties are private and unused. Remove?
+
+function FirebaseRequest(firestore) {
+  var _this = this;
+  _classCallCheck(this, FirebaseRequest);
+  _defineProperty(this, "getDoc", function (docPath) {
+    return _this.firestore.doc(docPath).get();
+  });
+  _defineProperty(this, "getAvailableDatasets", function () {
+    return _this.firestore.collection("dataset-descriptions").get().then(function (snapShot) {
+      var datasets = [];
+      snapShot.forEach(function (doc) {
+        var metadata = doc.data();
+        /** if running the site in a local development env or on staging.cfe.allencell.org
+         * include all cards, otherwise, only include cards with a production flag.
+         * this is based on hostname instead of a build time variable so we don't
+         * need a separate build for staging and production
+         */
+
+        if (isDevOrStagingSite(location.hostname)) {
+          datasets.push(metadata);
+        } else if (metadata.production) {
+          datasets.push(metadata);
+        }
+      });
+      return datasets;
+    });
+  });
+  _defineProperty(this, "setCollectionRef", function (id) {
+    _this.collectionRef = _this.firestore.collection("cfe-datasets").doc(id);
+  });
+  _defineProperty(this, "getManifest", function (ref) {
+    return _this.firestore.doc(ref).get().then(function (manifestDoc) {
+      return manifestDoc.data();
+    });
+  });
+  _defineProperty(this, "selectDataset", function (ref) {
+    return _this.getManifest(ref).then(function (data) {
+      _this.featuresDataPath = data.featuresDataPath;
+      _this.thumbnailRoot = data.thumbnailRoot;
+      _this.downloadRoot = data.downloadRoot;
+      _this.volumeViewerDataRoot = data.volumeViewerDataRoot;
+      _this.featuresDisplayOrder = data.featuresDisplayOrder;
+      _this.cellLineDataPath = data.cellLineDataPath;
+      _this.fileInfoPath = data.fileInfoPath;
+      _this.featuresDataOrder = data.featuresDataOrder;
+      _this.featureDefsPath = data.featureDefsPath;
+      _this.albumPath = data.albumPath;
+      return _objectSpread({}, data);
+    });
+  });
+  _defineProperty(this, "getFileInfoByCellId", function (cellId) {
+    return _this.getDoc("".concat(_this.fileInfoPath, "/").concat(cellId)).then(function (doc) {
+      var data = doc.data();
+      if (!data) {
+        return;
+      }
+      return _objectSpread(_objectSpread({}, data), {}, {
+        CellId: data.CellId.toString(),
+        FOVId: data.FOVId.toString()
+      });
+    });
+  });
+  _defineProperty(this, "getFileInfoByArrayOfCellIds", function (cellIds) {
+    return Promise.all(cellIds.map(function (id) {
+      return _this.getDoc("".concat(_this.fileInfoPath, "/").concat(id)).then(function (doc) {
+        var data = doc.data();
+        if (!data) {
+          return;
+        }
+        return _objectSpread(_objectSpread({}, data), {}, {
+          CellId: data.CellId.toString(),
+          FOVId: data.FOVId.toString()
+        });
+      });
+    }));
+  });
+  this.firestore = firestore;
+  this.featuresDataPath = "";
+  this.cellLineDataPath = "";
+  this.thumbnailRoot = "";
+  this.downloadRoot = "";
+  this.volumeViewerDataRoot = "";
+  this.featuresDisplayOrder = [];
+  this.fileInfoPath = "";
+  this.datasetId = "";
+  this.featuresDataOrder = [];
+  this.albumPath = "";
+  this.featureDefsPath = "";
+  this.collectionRef = firestore.collection("cfe-datasets").doc("v1");
+});
+export default FirebaseRequest;

package/es/aics-image-viewer/shared/utils/math.js

@@ -0,0 +1,3 @@
+export function clamp(value, min, max) {
+  return Math.min(Math.max(value, min), max);
+}