@ai-outfitter/outfitter 0.8.0 → 0.10.0

package/dist/cli/commands/RunCommand.js

@@ -1,29 +1,32 @@
 // Provides the command object for launching selected profiles.
-import { existsSync } from 'node:fs';
 import { homedir } from 'node:os';
-import { join } from 'node:path';
 import spawn from 'cross-spawn';
 import { createAgentAdapter } from '../../agents/AgentRegistry.js';
-import { resolveOutfitterDocsDirectory } from '../../agents/OutfitterDocs.js';
 import { exportSystemPromptIfEnabled } from '../../prompts/SystemPromptExport.js';
 import { createCompositeProfileRootDirectory, writeCompositeProfile, } from '../../compositeProfile/CompositeProfileAssembler.js';
 import { renderCompositeProfileTemplates } from '../../compositeProfile/CompositeProfileTemplate.js';
-import { createCompositeProfileStateBaseline, detectCompositeProfileStateWrites, updateCompositeProfileStateBaselinePaths, } from '../../compositeProfile/StatePersistence.js';
+import { createCompositeProfileStateBaseline, detectCompositeProfileStateWrites, persistCompositeProfileStateWrite, recordProfileStatePersistenceOverride, updateCompositeProfileStateBaselinePaths, } from '../../compositeProfile/StatePersistence.js';
 import { watchCompositeProfileInputs } from '../../compositeProfile/CompositeProfileWatcher.js';
+import { registerCompositeProfileDirectoryCleanup, sweepStaleCompositeProfileDirectories, } from '../../compositeProfile/CompositeProfileCleanup.js';
 import { launchAgentProcess, resolveAgentLaunchExecutable } from '../../agents/AgentLaunch.js';
-import { isNonInteractivePiLaunch, preparePiLoginLaunchPlan } from './PiLoginLaunch.js';
-import { syncProfileSource } from './SyncCommand.js';
+import { preparePiLoginLaunchPlan } from './PiLoginLaunch.js';
 import { emitLaunchSummary } from './run/RunLaunchSummary.js';
-import { createFirstRunBootstrapProfile, createLaunchProfileLayers, loadProfileSources, loadResolvedProfile, selectRunAgentId, } from './run/RunProfileResolution.js';
+import { isInteractiveRunLaunch, prepareFirstRunRuntimeOnboarding, resolveRunProgressWriter, } from './run/RunFirstRunOnboarding.js';
+import { createTerminalStateWritePrompt } from './run/RunStateWritePrompt.js';
+import { resolveProfileSkillControls } from '../../skills/ProfileSkillResolution.js';
+import { createFirstRunBootstrapProfile, createLaunchProfileLayers, loadProfileSources, loadResolvedProfile, materializeProfileSourcePaths, selectRunAgentId, } from './run/RunProfileResolution.js';
 export { createLaunchProfileLayers, loadProfileSources };
 export { resolveAgentLaunchExecutable } from '../../agents/AgentLaunch.js';
 export const executeRunCommand = async (input, dependencies = {}) => {
+    sweepStaleCompositeProfileDirectories();
     const runtimeOnboarding = prepareFirstRunRuntimeOnboarding(input, dependencies);
-    const resolvedProfile = runtimeOnboarding === undefined ? loadResolvedProfile(input) : createFirstRunBootstrapProfile(input);
-    const adapter = dependencies.adapter ?? createAgentAdapter(selectRunAgentId(input.agentId, resolvedProfile.settings.defaultAgent));
-    const compositeProfileRootDirectory = createCompositeProfileRootDirectory(resolvedProfile.profile.id, adapter.id);
+    const loadedProfile = runtimeOnboarding === undefined ? loadResolvedProfile(input) : createFirstRunBootstrapProfile(input);
+    const adapter = dependencies.adapter ?? createAgentAdapter(selectRunAgentId(input.agentId, loadedProfile.settings.defaultAgent));
+    const compositeProfileRootDirectory = createCompositeProfileRootDirectory(loadedProfile.profile.id, adapter.id);
+    prepareCompositeProfileTeardown(input, compositeProfileRootDirectory, dependencies);
+    const resolvedProfile = resolveRunProfileSkills(loadedProfile, compositeProfileRootDirectory);
     const compositeProfilePlan = createAdapterCompositeProfilePlan(adapter, resolvedProfile, compositeProfileRootDirectory);
-    const warnings = compositeProfilePlan.warnings;
+    const warnings = [...resolvedProfile.skillWarnings, ...compositeProfilePlan.warnings];
     failStrictOnWarnings(adapter.id, warnings, input.strict);
     emitWarnings(warnings, dependencies.writeError);
     writeCompositeProfile(compositeProfilePlan.compositeProfile);
@@ -38,12 +41,13 @@ export const executeRunCommand = async (input, dependencies = {}) => {
     const launchPlan = preparePiLoginLaunchPlan({
         adapterId: adapter.id,
         homeDirectory: input.homeDirectory,
+        profile: { id: resolvedProfile.profile.id, label: resolvedProfile.profile.label },
         launchPlan: withSystemPromptExportPath(adapter.createLaunchPlan(compositeProfilePlan.compositeProfile, resolvedProfile.profile, input.passThroughArgs ?? [], {
             profileFolders: resolvedProfile.profileFolders,
             profileLayers: createLaunchProfileLayers(resolvedProfile.profileLayers),
             projectDirectory: input.projectDirectory,
             cacheDirectory: resolvedProfile.cacheDirectory,
-            outfitterDocsDirectory: input.outfitterDocsDirectory,
+            onProgress: resolveRunProgressWriter(dependencies),
         }), systemPromptExport.outputPath),
         runtimeOnboarding: runtimeOnboarding === undefined
             ? undefined
@@ -81,7 +85,16 @@ export const executeRunCommand = async (input, dependencies = {}) => {
         const launcher = dependencies.launcher ??
             /* v8 ignore next -- tests inject launchers instead of spawning pi. */ createSpawnLauncher();
         const exitCode = await launchAgentProcess(launcher, launchPlan, adapter.id);
-        const stateWriteWarnings = handleCompositeProfileStateWrites(adapter.id, compositeProfilePlan.compositeProfile.rootDirectory, compositeProfilePlan.compositeProfile.statePaths, stateBaseline);
+        const stateWriteWarnings = await handleCompositeProfileStateWrites({
+            adapterId: adapter.id,
+            rootDirectory: compositeProfilePlan.compositeProfile.rootDirectory,
+            statePaths: compositeProfilePlan.compositeProfile.statePaths,
+            stateBaseline,
+            prompt: resolveStateWritePrompt(dependencies),
+            recordAlwaysChoice: (relativePath) => recordAlwaysStatePersistenceChoice(adapter, resolvedProfile, relativePath),
+            /* v8 ignore next -- console fallback is direct CLI behavior; tests inject a line writer. */
+            notify: dependencies.writeLine ?? console.log,
+        });
         failStrictOnWarnings(adapter.id, stateWriteWarnings, input.strict);
         emitWarnings(stateWriteWarnings, dependencies.writeError);
         return {
@@ -111,7 +124,6 @@ export const createRunCommand = (dependencies = {}) => {
                     agentId: options.agent,
                     strict: options.strict,
                     passThroughArgs: args,
-                    outfitterDocsDirectory: resolveOutfitterDocsDirectory(),
                 }, dependencies);
                 if (result.exitCode !== 0) {
                     process.exitCode = result.exitCode;
@@ -132,7 +144,27 @@ const configureRunCommander = (command, action) => {
         .allowExcessArguments(true)
         .action(action);
 };
-/* v8 ignore stop */
+// Catalog skill IDs are resolved to generated skill directories under the composite
+// profile root before adapters run, so adapters keep receiving plain path sources and
+// the generated skills are removed with the composite profile at exit.
+const resolveRunProfileSkills = (resolvedProfile, compositeProfileRootDirectory) => {
+    const resolution = resolveProfileSkillControls({
+        profile: resolvedProfile.profile,
+        profileLayers: resolvedProfile.profileLayers,
+        sourcePaths: materializeProfileSourcePaths(resolvedProfile.homeDirectory, resolvedProfile.settings.profileSources ?? []),
+        projectDirectory: resolvedProfile.projectDirectory,
+        outputDirectory: compositeProfileRootDirectory,
+    });
+    const errors = resolution.diagnostics.filter((diagnostic) => diagnostic.severity === 'error');
+    if (errors.length > 0) {
+        throw new Error(`Cannot resolve profile skills: ${errors.map((issue) => `${issue.path} ${issue.message}`).join('; ')}`);
+    }
+    return {
+        ...resolvedProfile,
+        profile: resolution.profile,
+        skillWarnings: resolution.diagnostics.map((diagnostic) => diagnostic.message),
+    };
+};
 const failStrictOnWarnings = (adapterId, warnings, strict) => {
     if (strict === true && warnings.length > 0) {
         throw new Error(`Strict failed for ${adapterId}: ${warnings.join('; ')}`);
@@ -167,64 +199,117 @@ const createAdapterCompositeProfilePlan = (adapter, resolvedProfile, rootDirecto
         }),
     };
 };
-const handleCompositeProfileStateWrites = (adapterId, compositeProfileRootDirectory, statePaths, stateBaseline) => {
+// Composite directories are removed at process exit and on handled signals. When the agent
+// is launched with --debug the directory is kept for inspection and its path is printed.
+const prepareCompositeProfileTeardown = (input, compositeProfileRootDirectory, dependencies) => {
+    if (isDebugRunLaunch(input.passThroughArgs)) {
+        /* v8 ignore next -- console fallback is direct CLI behavior; tests inject a line writer. */
+        (dependencies.writeLine ?? console.log)(`--debug: keeping composite profile directory ${compositeProfileRootDirectory}`);
+        return;
+    }
+    registerCompositeProfileDirectoryCleanup(compositeProfileRootDirectory);
+};
+const isDebugRunLaunch = (passThroughArgs) => (passThroughArgs ?? []).includes('--debug');
+const handleCompositeProfileStateWrites = async (input) => {
     const warnings = [];
-    for (const issue of detectCompositeProfileStateWrites(compositeProfileRootDirectory, statePaths, stateBaseline)) {
+    for (const issue of detectCompositeProfileStateWrites(input.rootDirectory, input.statePaths, input.stateBaseline)) {
         if (issue.strategy === 'error') {
-            throw new Error(formatCompositeProfileStateWriteIssue(adapterId, issue));
+            throw new Error(formatCompositeProfileStateWriteIssue(input.adapterId, issue));
         }
-        warnings.push(formatCompositeProfileStateWriteIssue(adapterId, issue));
+        if (issue.strategy === 'prompt') {
+            warnings.push(...(await handlePromptStateWriteIssue(input, issue)));
+            continue;
+        }
+        warnings.push(formatCompositeProfileStateWriteIssue(input.adapterId, issue));
     }
     return warnings;
 };
-const formatCompositeProfileStateWriteIssue = (adapterId, issue) => {
+const handlePromptStateWriteIssue = async (input, issue) => {
     if (issue.unknown) {
-        return `${adapterId} wrote undeclared composite profile state '${issue.relativePath}' and it was not persisted.`;
+        return [
+            formatCompositeProfileStateWriteIssue(input.adapterId, issue),
+            `state_persistence 'prompt' cannot persist undeclared writes; '${issue.relativePath}' was reported instead.`,
+        ];
     }
-    if (issue.strategy === 'symlink') {
-        return `${adapterId} replaced symlinked state path '${issue.relativePath}' and the change was not persisted.`;
+    if (input.prompt === undefined) {
+        return [
+            formatCompositeProfileStateWriteIssue(input.adapterId, issue),
+            `state_persistence prompt for '${issue.relativePath}' skipped: non-interactive session.`,
+        ];
     }
-    return `${adapterId} wrote '${issue.relativePath}' with state_persistence '${issue.strategy}' and it was not persisted.`;
-};
-const defaultProfilesSource = {
-    github: 'ai-outfitter/default-profiles',
-    path: 'profiles',
+    const statePath = findDeclaredStatePath(input.statePaths, issue.relativePath);
+    const choice = await input.prompt({
+        agentId: input.adapterId,
+        relativePath: issue.relativePath,
+        sourcePath: statePath.sourcePath,
+    });
+    return applyPromptStateWriteChoice(input, statePath, choice);
 };
-const prepareFirstRunRuntimeOnboarding = (input, dependencies) => {
-    if (!shouldUsePiNativeFirstRunOnboarding(input, dependencies)) {
-        return undefined;
+const applyPromptStateWriteChoice = (input, statePath, choice) => {
+    if (choice === 'discard') {
+        input.notify(`Discarded ${input.adapterId} state write to '${statePath.relativePath}'.`);
+        return [];
+    }
+    try {
+        persistCompositeProfileStateWrite(input.rootDirectory, statePath);
     }
-    const syncResult = syncProfileSource(input.homeDirectory, defaultProfilesSource, dependencies.synchronizer);
-    /* v8 ignore next -- network/cache failure path is integration-level behavior; setup fallback message is deterministic. */
-    if (syncResult.status === 'failed') {
-        throw new Error(`Cannot start Pi-native onboarding because the default profiles source failed to sync: ${syncResult.message}. ` +
-            'Fix the network/git issue or run `outfitter setup` once the source is reachable.');
+    catch (error) {
+        return [`Could not persist state path '${statePath.relativePath}': ${String(error)}`];
     }
-    return { defaultProfilesPath: join(syncResult.cachePath, defaultProfilesSource.path) };
+    input.notify(`Persisted ${input.adapterId} state write '${statePath.relativePath}' to ${statePath.sourcePath}.`);
+    if (choice === 'always') {
+        const warning = input.recordAlwaysChoice(statePath.relativePath);
+        return warning === undefined ? [] : [warning];
+    }
+    return [];
 };
-const shouldUsePiNativeFirstRunOnboarding = (input, dependencies) => {
-    if (input.forceRuntimeOnboarding !== true && existsSync(join(input.homeDirectory, '.outfitter', 'settings.yml'))) {
-        return false;
+const findDeclaredStatePath = (statePaths, relativePath) => {
+    const statePath = statePaths.find((candidate) => candidate.relativePath === relativePath);
+    /* v8 ignore next 3 -- declared prompt issues always originate from a declared state path. */
+    if (statePath === undefined) {
+        throw new Error(`State path '${relativePath}' is not declared by the composite profile.`);
     }
-    const selectedAgentId = dependencies.adapter?.id ?? selectRunAgentId(input.agentId, undefined);
-    /* v8 ignore next -- explicit profile/non-pi paths are covered by normal run command selection tests. */
-    if (input.profileId !== undefined || selectedAgentId !== 'pi') {
-        return false;
+    return statePath;
+};
+// The "always" choice is recorded in the selected profile's own YAML file because profiles
+// are the single source of truth for state_persistence policy; a parallel settings-layer
+// override would create a second precedence system that adapter validation cannot see.
+// Remote/cached profiles are never mutated, so the choice degrades to a one-run persist
+// with an actionable warning.
+const recordAlwaysStatePersistenceChoice = (adapter, resolvedProfile, relativePath) => {
+    const declaration = adapter.statePaths?.[relativePath];
+    if (declaration === undefined || !declaration.allowedStrategies.includes('symlink')) {
+        return (`Cannot always-persist '${relativePath}': the ${adapter.id} adapter does not allow 'symlink' for it; ` +
+            `the write was persisted once.`);
     }
-    if (isNonInteractivePiLaunch(input.passThroughArgs ?? [])) {
-        return false;
+    const selectedLayer = [...resolvedProfile.profileLayers]
+        .reverse()
+        .find((layer) => layer.profile.id === resolvedProfile.profile.id);
+    if (selectedLayer === undefined ||
+        selectedLayer.source.uri !== undefined ||
+        selectedLayer.source.github !== undefined) {
+        return (`Cannot record the always-persist choice for '${relativePath}' because profile ` +
+            `'${resolvedProfile.profile.id}' is not a local profile file; the write was persisted once.`);
     }
-    return isInteractiveRunLaunch(dependencies);
+    recordProfileStatePersistenceOverride(selectedLayer.profilePath, relativePath, 'symlink');
+    return undefined;
 };
-const isInteractiveRunLaunch = (dependencies) => {
-    if (dependencies.interactive !== undefined) {
-        return dependencies.interactive;
+const resolveStateWritePrompt = (dependencies) => {
+    if (!isInteractiveRunLaunch(dependencies)) {
+        return undefined;
     }
-    /* v8 ignore next -- default process streams are direct terminal behavior; tests inject streams. */
-    const inputIsTty = (dependencies.input ?? process.stdin).isTTY === true;
-    /* v8 ignore next -- default process streams are direct terminal behavior; tests inject streams. */
-    const outputIsTty = (dependencies.output ?? process.stdout).isTTY === true;
-    return inputIsTty && outputIsTty;
+    return (dependencies.promptStateWritePersistence ??
+        /* v8 ignore next -- terminal prompting is direct CLI behavior; tests inject a prompt. */
+        createTerminalStateWritePrompt(dependencies.input ?? process.stdin, dependencies.output ?? process.stdout));
+};
+const formatCompositeProfileStateWriteIssue = (adapterId, issue) => {
+    if (issue.unknown) {
+        return `${adapterId} wrote undeclared composite profile state '${issue.relativePath}' and it was not persisted.`;
+    }
+    if (issue.strategy === 'symlink') {
+        return `${adapterId} replaced symlinked state path '${issue.relativePath}' and the change was not persisted.`;
+    }
+    return `${adapterId} wrote '${issue.relativePath}' with state_persistence '${issue.strategy}' and it was not persisted.`;
 };
 const withSystemPromptExportPath = (launchPlan, outputPath) => outputPath === undefined
     ? launchPlan

package/dist/cli/commands/RunCommand.js.map

@@ -1 +1 @@
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package/dist/cli/commands/SyncCommand.d.ts

@@ -36,7 +36,7 @@ export interface SyncCommandDependencies {
 }
 export declare const executeSyncCommand: (input: SyncCommandInput, dependencies?: SyncCommandDependencies) => SyncCommandResult;
 export declare const createSyncCommand: (dependencies?: SyncCommandDependencies) => CommandObject;
-export declare const createGitSynchronizer: () => UriProfileSourceSynchronizer;
+export declare const createGitSynchronizer: (progress?: (message: string) => void) => UriProfileSourceSynchronizer;
 export type RemoteProfileSource = ProfileSourceReference & ({
     readonly uri: string;
 } | {

package/dist/cli/commands/SyncCommand.js

@@ -1,20 +1,21 @@
 // Provides the command object for synchronizing URI-backed profile and settings sources.
-import { existsSync, mkdirSync } from 'node:fs';
+import { existsSync, mkdirSync, rmSync } from 'node:fs';
 import { createRequire } from 'node:module';
 import { homedir } from 'node:os';
-import { dirname } from 'node:path';
+import { dirname, join } from 'node:path';
 import { fileURLToPath } from 'node:url';
 import spawn from 'cross-spawn';
 import { createProfileSourceCachePath, createRemoteRepositoryCachePath, normalizeGitUri, redactProfileSourceUriCredentials, resolveRemoteRepositorySubpath, } from '../../profiles/ProfileCache.js';
 import { loadLocalProfileSource } from '../../profiles/ProfileLoader.js';
 import { normalizeRemoteSourceUri, } from '../../profiles/ProfileSource.js';
-import { discoverSettingsLoadPlan, loadSettings, loadSettingsWithCachedRemoteSettings, } from '../../settings/SettingsLoader.js';
+import { refreshPiExtensionCaches } from '../../agents/pi/PiExtensionCache.js';
+import { discoverSettingsLoadPlan, loadSettings, loadSettingsWithCachedRemoteSettings, resolveCachedRemoteSettingsPath, } from '../../settings/SettingsLoader.js';
 export const executeSyncCommand = (input, dependencies = {}) => {
     const localSettings = loadSettings(discoverSettingsLoadPlan(input));
     if (localSettings.issues.length > 0) {
         throw new Error(`Cannot sync with invalid settings: ${localSettings.issues.map(formatSettingsIssue).join('; ')}`);
     }
-    const synchronizer = dependencies.synchronizer ?? createGitSynchronizer();
+    const synchronizer = dependencies.synchronizer ?? createGitSynchronizer(dependencies.writeLine);
     const repositoryVisibilityClassifier = dependencies.repositoryVisibilityClassifier ?? createGitHubRepositoryVisibilityClassifier();
     const privateCatalogGate = createPrivateCatalogGate(input.homeDirectory, repositoryVisibilityClassifier, dependencies);
     const remoteSettingsSources = localSettings.settings.remoteSettings;
@@ -35,13 +36,15 @@ export const executeSyncCommand = (input, dependencies = {}) => {
         ...profileSourceGateResults.skippedResults,
     ];
     const infoMessages = [...remoteSettingsGateResults.messages, ...profileSourceGateResults.messages];
+    const extensionRefreshMessages = refreshPiExtensionCaches(loadedSettings.settings.cacheDirectory ?? join(input.homeDirectory, '.outfitter', 'cache'), { onProgress: dependencies.writeLine }).map((result) => `${result.status}: pi extension ${result.source} (${result.message})`);
     return {
         sources: sourceResults,
-        messages: sourceResults.length === 0
+        messages: sourceResults.length === 0 && extensionRefreshMessages.length === 0
             ? ['No URI profile or remote settings sources configured; nothing to sync.']
             : [
                 ...infoMessages,
                 ...sourceResults.map((result) => `${result.status}: ${result.uri} -> ${result.cachePath} (${result.message})`),
+                ...extensionRefreshMessages,
             ],
     };
 };
@@ -54,15 +57,16 @@ export const createSyncCommand = (dependencies = {}) => {
                 .command(command.name)
                 .description(command.description)
                 .action(() => {
+                /* v8 ignore next -- console fallback is direct CLI behavior; tests inject a writer. */
+                const writeLine = dependencies.writeLine ?? console.log;
                 const result = executeSyncCommand({
                     /* v8 ignore next -- default process home is exercised by the direct CLI entrypoint, not unit tests. */
                     homeDirectory: dependencies.homeDirectory ?? homedir(),
                     /* v8 ignore next -- default process cwd is exercised by the direct CLI entrypoint, not unit tests. */
                     projectDirectory: dependencies.projectDirectory ?? process.cwd(),
-                }, dependencies);
+                }, { ...dependencies, writeLine });
                 for (const message of result.messages) {
-                    /* v8 ignore next -- console fallback is direct CLI behavior; tests inject a writer. */
-                    (dependencies.writeLine ?? console.log)(message);
+                    writeLine(message);
                 }
             });
         },
@@ -73,8 +77,11 @@ const syncRemoteSettingsSource = (homeDirectory, source, synchronizer) => {
     const cachePath = createRemoteRepositoryCachePath(homeDirectory, source);
     const displayUri = formatDisplayUri(source);
     try {
-        const settingsPath = resolveRemoteRepositorySubpath(cachePath, source.path);
+        // Resolving the configured subpath before syncing rejects unsafe (absolute or
+        // cache-escaping) paths without invoking the synchronizer.
+        resolveRemoteRepositorySubpath(cachePath, source.path);
         const status = synchronizer.sync(source, cachePath);
+        const settingsPath = resolveCachedRemoteSettingsPath(homeDirectory, source);
         if (!existsSync(settingsPath)) {
             return {
                 uri: displayUri,
@@ -119,10 +126,11 @@ const syncUriSource = (homeDirectory, source, synchronizer) => {
         return formatSyncFailure(displayUri, cachePath, source, error);
     }
 };
-export const createGitSynchronizer = () => ({
+export const createGitSynchronizer = (progress) => ({
     sync(source, cachePath) {
         mkdirSync(dirname(cachePath), { recursive: true });
         if (existsSync(cachePath)) {
+            progress?.(`outfitter: updating catalog ${formatDisplayUri(source)}…`);
             runGit(['-C', cachePath, 'fetch', '--all', '--tags']);
             if (source.ref === undefined) {
                 runGit(['-C', cachePath, 'pull', '--ff-only']);
@@ -132,11 +140,28 @@ export const createGitSynchronizer = () => ({
             }
             return 'updated';
         }
-        runGit(['clone', '--', normalizeGitUri(normalizeRemoteSourceUri(source)), cachePath]);
-        checkoutRefIfPresent(cachePath, source.ref);
+        progress?.(`outfitter: cloning catalog ${formatDisplayUri(source)}…`);
+        cloneCatalogSource(source, cachePath);
         return 'updated';
     },
 });
+// Catalog caches are shallow single-branch clones to keep first boot fast on large org catalogs.
+// A ref names the branch or tag to shallow-clone directly; refs that are not remote branch/tag
+// names (for example commit SHAs) fall back to a full clone plus checkout.
+const cloneCatalogSource = (source, cachePath) => {
+    const cloneUri = normalizeGitUri(normalizeRemoteSourceUri(source));
+    if (source.ref === undefined) {
+        runGit(['clone', '--depth', '1', '--single-branch', '--', cloneUri, cachePath]);
+        return;
+    }
+    assertSafeGitRef(source.ref);
+    if (gitSucceeds(['clone', '--depth', '1', '--single-branch', '--branch', source.ref, '--', cloneUri, cachePath])) {
+        return;
+    }
+    rmSync(cachePath, { recursive: true, force: true });
+    runGit(['clone', '--', cloneUri, cachePath]);
+    checkoutRefIfPresent(cachePath, source.ref);
+};
 const checkoutRefIfPresent = (cachePath, ref) => {
     if (ref === undefined) {
         return;

package/dist/cli/commands/SyncCommand.js.map

@@ -1 +1 @@
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package/dist/cli/commands/profile/LintCommand.js

@@ -5,6 +5,8 @@ import { createCompositeProfileRootDirectory } from '../../../compositeProfile/C
 import { createPromptIncludeDiagnostics } from '../../../profiles/PromptIncludes.js';
 import { resolveProfile } from '../../../profiles/ProfileMerger.js';
 import { loadSettingsWithCachedRemoteSettings } from '../../../settings/SettingsLoader.js';
+import { resolveProfileSkillControls } from '../../../skills/ProfileSkillResolution.js';
+import { materializeProfileSourcePaths } from '../run/RunProfileResolution.js';
 import { createLaunchProfileLayers, loadProfileSources } from '../RunCommand.js';
 import { getOrCreateProfileCommander } from './Shared.js';
 export const executeProfileLintCommand = (input) => {
@@ -64,7 +66,37 @@ const collectProfileLintDiagnostics = (input) => {
         message: diagnostic.message,
     }));
     const adapterDiagnostics = lintAdapterWarnings(loadedProfiles.profiles, input.projectDirectory);
-    return [...loadDiagnostics, ...inheritanceDiagnostics, ...promptDiagnostics, ...adapterDiagnostics];
+    const skillDiagnostics = lintProfileSkills(loadedProfiles.profiles, input);
+    return [
+        ...loadDiagnostics,
+        ...inheritanceDiagnostics,
+        ...promptDiagnostics,
+        ...adapterDiagnostics,
+        ...skillDiagnostics,
+    ];
+};
+// Diagnoses unresolved skill IDs, invalid SKILL.md frontmatter, missing `file`
+// references, escaping paths, and destination collisions without materializing.
+const lintProfileSkills = (profiles, input) => {
+    const settings = loadSettingsWithCachedRemoteSettings(input);
+    const sourcePaths = materializeProfileSourcePaths(input.homeDirectory, settings.settings.profileSources ?? []);
+    return [...new Set(profiles.map((profile) => profile.profile.id))].flatMap((profileId) => {
+        const resolution = resolveProfile({ profiles, profileId });
+        if (resolution.profile === undefined || resolution.issues.length > 0) {
+            return [];
+        }
+        const stackProfiles = profiles.filter((profile) => resolution.profileStack.some((stackProfile) => stackProfile.id === profile.profile.id));
+        return resolveProfileSkillControls({
+            profile: resolution.profile,
+            profileLayers: stackProfiles,
+            sourcePaths,
+            projectDirectory: input.projectDirectory,
+        }).diagnostics.map((diagnostic) => ({
+            severity: diagnostic.severity,
+            path: `/profiles/${profileId}: ${diagnostic.path}`,
+            message: diagnostic.message,
+        }));
+    });
 };
 const lintProfileInheritance = (profiles) => [...new Set(profiles.map((profile) => profile.profile.id))].flatMap((profileId) => resolveProfile({ profiles, profileId }).issues.map((issue) => ({
     severity: 'error',

package/dist/cli/commands/profile/LintCommand.js.map

@@ -1 +1 @@
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package/dist/cli/commands/run/RunFirstRunOnboarding.d.ts

@@ -0,0 +1,7 @@
+import type { RunCommandDependencies, RunCommandInput } from '../RunCommand.js';
+export interface FirstRunRuntimeOnboarding {
+    readonly defaultProfilesPath: string;
+}
+export declare const prepareFirstRunRuntimeOnboarding: (input: RunCommandInput, dependencies: RunCommandDependencies) => FirstRunRuntimeOnboarding | undefined;
+export declare const resolveRunProgressWriter: (dependencies: RunCommandDependencies) => ((message: string) => void);
+export declare const isInteractiveRunLaunch: (dependencies: RunCommandDependencies) => boolean;