@agents-inc/cli 0.85.0 → 0.87.0

package/dist/commands/doctor.js

@@ -1,26 +1,30 @@
 #!/usr/bin/env node
+import {
+  detectProject,
+  loadSource
+} from "../chunk-5UJJQFET.js";
+import "../chunk-N6A7A4RA.js";
+import "../chunk-FBZR46GC.js";
 import {
   discoverLocalSkills,
   getStackSkillIds,
-  loadProjectConfig,
-  loadSkillsMatrixFromSource,
   validateProjectConfig
-} from "../chunk-FKXD3EXJ.js";
-import "../chunk-YJ2URWF7.js";
+} from "../chunk-TMTUTUEV.js";
+import "../chunk-B6MYECV6.js";
 import {
   matrix
 } from "../chunk-ANXHMG32.js";
 import {
   BaseCommand,
   EXIT_CODES
-} from "../chunk-LMR7VAP3.js";
+} from "../chunk-MMTMXLI4.js";
 import {
   directoryExists,
   fileExists,
   getErrorMessage,
   glob,
   setVerbose
-} from "../chunk-WJKD6EGK.js";
+} from "../chunk-NUU3U43A.js";
 import "../chunk-6XWHJHNZ.js";
 import {
   CLAUDE_DIR,
@@ -39,33 +43,44 @@ init_esm_shims();
 import { Flags } from "@oclif/core";
 import os from "os";
 import path from "path";
-async function checkConfigValid(projectDir) {
-  const loaded = await loadProjectConfig(projectDir);
-  if (!loaded) {
+function checkConfigValid(config) {
+  if (!config) {
     return {
-      status: "fail",
-      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} not found`,
-      details: [`Run '${CLI_BIN_NAME} init' to create a configuration`]
+      result: {
+        status: "fail",
+        message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} not found`,
+        details: [`Run '${CLI_BIN_NAME} init' to create a configuration`]
+      },
+      config: null
     };
   }
-  const validation = validateProjectConfig(loaded.config);
+  const validation = validateProjectConfig(config);
   if (!validation.valid) {
     return {
-      status: "fail",
-      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has errors`,
-      details: validation.errors
+      result: {
+        status: "fail",
+        message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has errors`,
+        details: validation.errors
+      },
+      config: null
     };
   }
   if (validation.warnings.length > 0) {
     return {
-      status: "warn",
-      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has warnings`,
-      details: validation.warnings
+      result: {
+        status: "warn",
+        message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has warnings`,
+        details: validation.warnings
+      },
+      config
     };
   }
   return {
-    status: "pass",
-    message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} is valid`
+    result: {
+      status: "pass",
+      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} is valid`
+    },
+    config
   };
 }
 async function checkSkillsResolved(config, matrix2, projectDir) {
@@ -168,7 +183,7 @@ async function checkNoOrphans(config, projectDir) {
 }
 async function checkSourceReachable(sourceFlag, projectDir) {
   try {
-    const result = await loadSkillsMatrixFromSource({
+    const { sourceResult: result } = await loadSource({
       sourceFlag,
       projectDir
     });
@@ -275,6 +290,7 @@ function formatTips(results) {
   }
   return tips;
 }
+var SKIP_RESULT = { status: "skip", message: "Skipped (config invalid)" };
 var Doctor = class _Doctor extends BaseCommand {
   static summary = "Diagnose common configuration issues";
   static description = `Run diagnostic checks on your ${DEFAULT_BRANDING.NAME} configuration to identify issues with config validity, skill resolution, agent compilation, and source connectivity.`;
@@ -298,81 +314,50 @@ var Doctor = class _Doctor extends BaseCommand {
     const { flags } = await this.parse(_Doctor);
     setVerbose(flags.verbose);
     const projectDir = process.cwd();
+    this.printHeader();
+    const results = await this.runAllChecks(projectDir, flags);
+    this.printResults(results);
+    if (results.some((r) => r.status === "fail")) {
+      this.exit(EXIT_CODES.ERROR);
+    }
+  }
+  printHeader() {
     this.log("");
     this.log(`${DEFAULT_BRANDING.NAME} Doctor`);
     this.log("");
     this.log("  Checking configuration health...");
     this.log("");
-    const results = [];
-    const configResult = await checkConfigValid(projectDir);
-    results.push(configResult);
-    formatCheckLine("Config Valid", configResult, flags.verbose).forEach((line) => this.log(line));
-    let config = null;
-    if (configResult.status !== "fail") {
-      const loaded = await loadProjectConfig(projectDir);
-      config = loaded?.config ?? null;
-    }
+  }
+  async runAllChecks(projectDir, flags) {
+    const detected = await detectProject(projectDir);
+    const { result: configResult, config } = checkConfigValid(detected?.config ?? null);
+    this.logCheck("Config Valid", configResult, flags.verbose);
     const sourceResult = await checkSourceReachable(flags.source, projectDir);
-    if (config) {
-      const skillsResult = await checkSkillsResolved(config, matrix, projectDir);
-      results.push(skillsResult);
-      formatCheckLine("Skills Resolved", skillsResult, flags.verbose).forEach(
-        (line) => this.log(line)
-      );
-    } else {
-      const skipResult = {
-        status: "skip",
-        message: "Skipped (config invalid)"
-      };
-      results.push(skipResult);
-      formatCheckLine("Skills Resolved", skipResult, flags.verbose).forEach(
-        (line) => this.log(line)
-      );
-    }
-    if (config) {
-      const agentsResult = await checkAgentsCompiled(config, projectDir);
-      results.push(agentsResult);
-      formatCheckLine("Agents Compiled", agentsResult, flags.verbose).forEach(
-        (line) => this.log(line)
-      );
-    } else {
-      const skipResult = {
-        status: "skip",
-        message: "Skipped (config invalid)"
-      };
-      results.push(skipResult);
-      formatCheckLine("Agents Compiled", skipResult, flags.verbose).forEach(
-        (line) => this.log(line)
-      );
-    }
-    if (config) {
-      const orphansResult = await checkNoOrphans(config, projectDir);
-      results.push(orphansResult);
-      formatCheckLine("No Orphans", orphansResult, flags.verbose).forEach((line) => this.log(line));
-    } else {
-      const skipResult = {
-        status: "skip",
-        message: "Skipped (config invalid)"
-      };
-      results.push(skipResult);
-      formatCheckLine("No Orphans", skipResult, flags.verbose).forEach((line) => this.log(line));
+    const skillsResult = config ? await checkSkillsResolved(config, matrix, projectDir) : SKIP_RESULT;
+    this.logCheck("Skills Resolved", skillsResult, flags.verbose);
+    const agentsResult = config ? await checkAgentsCompiled(config, projectDir) : SKIP_RESULT;
+    this.logCheck("Agents Compiled", agentsResult, flags.verbose);
+    const orphansResult = config ? await checkNoOrphans(config, projectDir) : SKIP_RESULT;
+    this.logCheck("No Orphans", orphansResult, flags.verbose);
+    this.logCheck("Source Reachable", sourceResult, flags.verbose);
+    return [configResult, skillsResult, agentsResult, orphansResult, sourceResult];
+  }
+  logCheck(name, result, verbose) {
+    for (const line of formatCheckLine(name, result, verbose)) {
+      this.log(line);
     }
-    results.push(sourceResult);
-    formatCheckLine("Source Reachable", sourceResult, flags.verbose).forEach(
-      (line) => this.log(line)
-    );
+  }
+  printResults(results) {
     this.log("");
     this.log(formatSummary(results));
     const tips = formatTips(results);
     if (tips.length > 0) {
       this.log("");
-      tips.forEach((tip) => this.log(tip));
+      for (const tip of tips) {
+        this.log(tip);
+      }
     }
     this.log("");
-    const hasErrors = results.some((r) => r.status === "fail");
-    if (hasErrors) {
-      this.exit(EXIT_CODES.ERROR);
-    }
   }
 };
 export {

package/dist/commands/doctor.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../src/cli/commands/doctor.ts"],"sourcesContent":["import { Flags } from \"@oclif/core\";\nimport os from \"os\";\nimport path from \"path\";\nimport { BaseCommand } from \"../base-command\";\nimport { getErrorMessage } from \"../utils/errors\";\nimport { EXIT_CODES } from \"../lib/exit-codes\";\nimport { loadProjectConfig, validateProjectConfig } from \"../lib/configuration\";\nimport { loadSkillsMatrixFromSource } from \"../lib/loading\";\nimport { matrix } from \"../lib/matrix/matrix-provider\";\nimport { discoverLocalSkills } from \"../lib/skills\";\nimport { getStackSkillIds } from \"../lib/stacks\";\nimport type { AgentName, MergedSkillsMatrix, ProjectConfig, SkillId } from \"../types\";\nimport { fileExists, glob, directoryExists } from \"../utils/fs\";\nimport {\n  CLAUDE_DIR,\n  CLAUDE_SRC_DIR,\n  CLI_BIN_NAME,\n  DEFAULT_BRANDING,\n  STANDARD_FILES,\n} from \"../consts\";\nimport { setVerbose } from \"../utils/logger\";\n\ntype CheckResult = {\n  status: \"pass\" | \"fail\" | \"warn\" | \"skip\";\n  message: string;\n  details?: string[];\n};\n\nasync function checkConfigValid(projectDir: string): Promise<CheckResult> {\n  const loaded = await loadProjectConfig(projectDir);\n\n  if (!loaded) {\n    return {\n      status: \"fail\",\n      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} not found`,\n      details: [`Run '${CLI_BIN_NAME} init' to create a configuration`],\n    };\n  }\n\n  const validation = validateProjectConfig(loaded.config);\n\n  if (!validation.valid) {\n    return {\n      status: \"fail\",\n      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has errors`,\n      details: validation.errors,\n    };\n  }\n\n  if (validation.warnings.length > 0) {\n    return {\n      status: \"warn\",\n      message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} has warnings`,\n      details: validation.warnings,\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: `${CLAUDE_SRC_DIR}/${STANDARD_FILES.CONFIG_TS} is valid`,\n  };\n}\n\nasync function checkSkillsResolved(\n  config: ProjectConfig,\n  matrix: MergedSkillsMatrix,\n  projectDir: string,\n): Promise<CheckResult> {\n  const uniqueSkills = config.stack ? getStackSkillIds(config.stack) : [];\n\n  if (uniqueSkills.length === 0) {\n    return {\n      status: \"pass\",\n      message: \"No skills configured\",\n    };\n  }\n\n  const localResult = await discoverLocalSkills(projectDir);\n  const globalResult = projectDir !== os.homedir() ? await discoverLocalSkills(os.homedir()) : null;\n  const localSkillIds = new Set([\n    ...(localResult?.skills.map((s) => s.id) ?? []),\n    ...(globalResult?.skills.map((s) => s.id) ?? []),\n  ]);\n\n  const missingSkills: string[] = [];\n  for (const skillId of uniqueSkills) {\n    const inMatrix = skillId in matrix.skills;\n    const inLocal = localSkillIds.has(skillId);\n    if (!inMatrix && !inLocal) {\n      missingSkills.push(skillId);\n    }\n  }\n\n  if (missingSkills.length > 0) {\n    return {\n      status: \"fail\",\n      message: `${uniqueSkills.length - missingSkills.length}/${uniqueSkills.length} skills found`,\n      details: missingSkills.map((s) => `- ${s} (not found)`),\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: `${uniqueSkills.length}/${uniqueSkills.length} skills found`,\n  };\n}\n\nasync function checkAgentsCompiled(\n  config: ProjectConfig,\n  projectDir: string,\n): Promise<CheckResult> {\n  const agents = config.agents ?? [];\n\n  if (agents.length === 0) {\n    return {\n      status: \"pass\",\n      message: \"No agents configured\",\n    };\n  }\n\n  const projectAgentsDir = path.join(projectDir, CLAUDE_DIR, \"agents\");\n  const globalAgentsDir = path.join(os.homedir(), CLAUDE_DIR, \"agents\");\n  const missingAgents: string[] = [];\n\n  for (const agent of agents) {\n    // Check scope-appropriate directory for the agent\n    const agentsDir = agent.scope === \"global\" ? globalAgentsDir : projectAgentsDir;\n    const agentPath = path.join(agentsDir, `${agent.name}.md`);\n    if (!(await fileExists(agentPath))) {\n      missingAgents.push(agent.name);\n    }\n  }\n\n  if (missingAgents.length > 0) {\n    return {\n      status: \"warn\",\n      message: `${missingAgents.length} agent${missingAgents.length === 1 ? \"\" : \"s\"} need${missingAgents.length === 1 ? \"s\" : \"\"} recompilation`,\n      details: missingAgents.map((a) => `- ${a} (missing)`),\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: `${agents.length}/${agents.length} agents compiled`,\n  };\n}\n\nasync function checkNoOrphans(config: ProjectConfig, projectDir: string): Promise<CheckResult> {\n  const projectAgentsDir = path.join(projectDir, CLAUDE_DIR, \"agents\");\n  const globalAgentsDir = path.join(os.homedir(), CLAUDE_DIR, \"agents\");\n\n  const projectExists = await directoryExists(projectAgentsDir);\n  const globalExists = projectDir !== os.homedir() && (await directoryExists(globalAgentsDir));\n\n  if (!projectExists && !globalExists) {\n    return {\n      status: \"pass\",\n      message: \"No agents directory\",\n    };\n  }\n\n  const projectMdFiles = projectExists ? await glob(\"*.md\", projectAgentsDir) : [];\n  const globalMdFiles = globalExists ? await glob(\"*.md\", globalAgentsDir) : [];\n  const mdFiles = [...new Set([...projectMdFiles, ...globalMdFiles])];\n  const configAgentNames: Set<string> = new Set((config.agents ?? []).map((a) => a.name));\n\n  const orphanedFiles: string[] = [];\n  for (const file of mdFiles) {\n    const agentName = file.replace(/\\.md$/, \"\");\n    if (!configAgentNames.has(agentName)) {\n      orphanedFiles.push(agentName);\n    }\n  }\n\n  if (orphanedFiles.length > 0) {\n    return {\n      status: \"warn\",\n      message: `${orphanedFiles.length} orphaned agent file${orphanedFiles.length === 1 ? \"\" : \"s\"}`,\n      details: orphanedFiles.map((f) => `- ${f}.md (not in config)`),\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: \"No orphaned agent files\",\n  };\n}\n\nasync function checkSourceReachable(\n  sourceFlag: string | undefined,\n  projectDir: string,\n): Promise<CheckResult> {\n  try {\n    const result = await loadSkillsMatrixFromSource({\n      sourceFlag,\n      projectDir,\n    });\n\n    const skillCount = Object.keys(matrix.skills).length;\n    const sourceLabel = result.isLocal ? \"local\" : \"remote\";\n\n    return {\n      status: \"pass\",\n      message: `Connected to ${sourceLabel}: ${result.sourcePath}`,\n      details: [`${skillCount} skills available`],\n    };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return {\n      status: \"fail\",\n      message: \"Failed to load source\",\n      details: [message],\n    };\n  }\n}\n\nconst CHECK_WIDTH = 20;\n\nfunction formatCheckName(name: string): string {\n  return name.padEnd(CHECK_WIDTH);\n}\n\nfunction formatStatus(status: CheckResult[\"status\"]): string {\n  switch (status) {\n    case \"pass\":\n      return \"\\u2713\"; // ✓\n    case \"fail\":\n      return \"\\u2717\"; // ✗\n    case \"warn\":\n      return \"!\";\n    case \"skip\":\n      return \"-\";\n    default:\n      return \"?\";\n  }\n}\n\nfunction formatCheckLine(name: string, result: CheckResult, verbose: boolean): string[] {\n  const statusIcon = formatStatus(result.status);\n  const nameFormatted = formatCheckName(name);\n  const lines: string[] = [];\n\n  lines.push(`  ${nameFormatted}${statusIcon}  ${result.message}`);\n\n  const shouldShowDetails =\n    result.details &&\n    result.details.length > 0 &&\n    (verbose || result.status === \"fail\" || result.status === \"warn\");\n\n  if (shouldShowDetails) {\n    for (const detail of result.details!) {\n      lines.push(`  ${\" \".repeat(CHECK_WIDTH)}   ${detail}`);\n    }\n  }\n\n  return lines;\n}\n\nfunction formatSummary(results: CheckResult[]): string {\n  let passed = 0;\n  let warnings = 0;\n  let errors = 0;\n\n  for (const result of results) {\n    switch (result.status) {\n      case \"pass\":\n        passed++;\n        break;\n      case \"warn\":\n        warnings++;\n        break;\n      case \"fail\":\n        errors++;\n        break;\n      // skip doesn't count\n      default:\n        break;\n    }\n  }\n\n  const parts: string[] = [];\n  parts.push(`${passed} passed`);\n\n  if (warnings > 0) {\n    parts.push(`${warnings} warning${warnings === 1 ? \"\" : \"s\"}`);\n  } else {\n    parts.push(`0 warnings`);\n  }\n\n  if (errors > 0) {\n    parts.push(`${errors} error${errors === 1 ? \"\" : \"s\"}`);\n  } else {\n    parts.push(`0 errors`);\n  }\n\n  return `  Summary: ${parts.join(\", \")}`;\n}\n\nfunction formatTips(results: CheckResult[]): string[] {\n  const hasAgentWarning = results.some(\n    (r) => r.status === \"warn\" && r.message.includes(\"recompilation\"),\n  );\n  const hasConfigError = results.some((r) => r.status === \"fail\" && r.message.includes(\"config\"));\n  const hasSkillError = results.some(\n    (r) => r.status === \"fail\" && r.message.includes(\"skills found\"),\n  );\n\n  const tips: string[] = [];\n\n  if (hasAgentWarning) {\n    tips.push(`  Tip: Run '${CLI_BIN_NAME} compile' to generate missing agent files`);\n  }\n  if (hasConfigError) {\n    tips.push(`  Tip: Run '${CLI_BIN_NAME} init' to create or fix configuration`);\n  }\n  if (hasSkillError) {\n    tips.push(\"  Tip: Check skill IDs in config match available skills\");\n  }\n\n  return tips;\n}\n\nexport default class Doctor extends BaseCommand {\n  static summary = \"Diagnose common configuration issues\";\n\n  static description = `Run diagnostic checks on your ${DEFAULT_BRANDING.NAME} configuration to identify issues with config validity, skill resolution, agent compilation, and source connectivity.`;\n\n  static examples = [\n    \"<%= config.bin %> <%= command.id %>\",\n    \"<%= config.bin %> <%= command.id %> --verbose\",\n    \"<%= config.bin %> <%= command.id %> --source /path/to/marketplace\",\n  ];\n\n  static flags = {\n    source: Flags.string({\n      char: \"s\",\n      description: \"Skills source path or URL\",\n    }),\n    verbose: Flags.boolean({\n      char: \"v\",\n      description: \"Show detailed output\",\n      default: false,\n    }),\n  };\n\n  async run(): Promise<void> {\n    const { flags } = await this.parse(Doctor);\n\n    setVerbose(flags.verbose);\n\n    const projectDir = process.cwd();\n\n    this.log(\"\");\n    this.log(`${DEFAULT_BRANDING.NAME} Doctor`);\n    this.log(\"\");\n    this.log(\"  Checking configuration health...\");\n    this.log(\"\");\n\n    const results: CheckResult[] = [];\n\n    const configResult = await checkConfigValid(projectDir);\n    results.push(configResult);\n    formatCheckLine(\"Config Valid\", configResult, flags.verbose).forEach((line) => this.log(line));\n\n    let config: ProjectConfig | null = null;\n\n    if (configResult.status !== \"fail\") {\n      const loaded = await loadProjectConfig(projectDir);\n      config = loaded?.config ?? null;\n    }\n\n    const sourceResult = await checkSourceReachable(flags.source, projectDir);\n\n    // loadSkillsMatrixFromSource (called by checkSourceReachable) populates the matrix automatically\n    if (config) {\n      const skillsResult = await checkSkillsResolved(config, matrix, projectDir);\n      results.push(skillsResult);\n      formatCheckLine(\"Skills Resolved\", skillsResult, flags.verbose).forEach((line) =>\n        this.log(line),\n      );\n    } else {\n      const skipResult: CheckResult = {\n        status: \"skip\",\n        message: \"Skipped (config invalid)\",\n      };\n      results.push(skipResult);\n      formatCheckLine(\"Skills Resolved\", skipResult, flags.verbose).forEach((line) =>\n        this.log(line),\n      );\n    }\n\n    if (config) {\n      const agentsResult = await checkAgentsCompiled(config, projectDir);\n      results.push(agentsResult);\n      formatCheckLine(\"Agents Compiled\", agentsResult, flags.verbose).forEach((line) =>\n        this.log(line),\n      );\n    } else {\n      const skipResult: CheckResult = {\n        status: \"skip\",\n        message: \"Skipped (config invalid)\",\n      };\n      results.push(skipResult);\n      formatCheckLine(\"Agents Compiled\", skipResult, flags.verbose).forEach((line) =>\n        this.log(line),\n      );\n    }\n\n    if (config) {\n      const orphansResult = await checkNoOrphans(config, projectDir);\n      results.push(orphansResult);\n      formatCheckLine(\"No Orphans\", orphansResult, flags.verbose).forEach((line) => this.log(line));\n    } else {\n      const skipResult: CheckResult = {\n        status: \"skip\",\n        message: \"Skipped (config invalid)\",\n      };\n      results.push(skipResult);\n      formatCheckLine(\"No Orphans\", skipResult, flags.verbose).forEach((line) => this.log(line));\n    }\n\n    results.push(sourceResult);\n    formatCheckLine(\"Source Reachable\", sourceResult, flags.verbose).forEach((line) =>\n      this.log(line),\n    );\n\n    this.log(\"\");\n    this.log(formatSummary(results));\n\n    const tips = formatTips(results);\n    if (tips.length > 0) {\n      this.log(\"\");\n      tips.forEach((tip) => this.log(tip));\n    }\n\n    this.log(\"\");\n\n    const hasErrors = results.some((r) => r.status === \"fail\");\n    if (hasErrors) {\n      this.exit(EXIT_CODES.ERROR);\n    }\n  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[]),\n    ...(globalResult?.skills.map((s) => s.id) ?? []),\n  ]);\n\n  const missingSkills: string[] = [];\n  for (const skillId of uniqueSkills) {\n    const inMatrix = skillId in matrix.skills;\n    const inLocal = localSkillIds.has(skillId);\n    if (!inMatrix && !inLocal) {\n      missingSkills.push(skillId);\n    }\n  }\n\n  if (missingSkills.length > 0) {\n    return {\n      status: \"fail\",\n      message: `${uniqueSkills.length - missingSkills.length}/${uniqueSkills.length} skills found`,\n      details: missingSkills.map((s) => `- ${s} (not found)`),\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: `${uniqueSkills.length}/${uniqueSkills.length} skills found`,\n  };\n}\n\nasync function checkAgentsCompiled(\n  config: ProjectConfig,\n  projectDir: string,\n): Promise<CheckResult> {\n  const agents = config.agents ?? 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[]).map((a) => a.name));\n\n  const orphanedFiles: string[] = [];\n  for (const file of mdFiles) {\n    const agentName = file.replace(/\\.md$/, \"\");\n    if (!configAgentNames.has(agentName)) {\n      orphanedFiles.push(agentName);\n    }\n  }\n\n  if (orphanedFiles.length > 0) {\n    return {\n      status: \"warn\",\n      message: `${orphanedFiles.length} orphaned agent file${orphanedFiles.length === 1 ? \"\" : \"s\"}`,\n      details: orphanedFiles.map((f) => `- ${f}.md (not in config)`),\n    };\n  }\n\n  return {\n    status: \"pass\",\n    message: \"No orphaned agent files\",\n  };\n}\n\nasync function checkSourceReachable(\n  sourceFlag: string | undefined,\n  projectDir: string,\n): Promise<CheckResult> {\n  try {\n    const { sourceResult: result } = await loadSource({\n      sourceFlag,\n      projectDir,\n    });\n\n    const skillCount = Object.keys(matrix.skills).length;\n    const sourceLabel = result.isLocal ? \"local\" : \"remote\";\n\n    return {\n      status: \"pass\",\n      message: `Connected to ${sourceLabel}: ${result.sourcePath}`,\n      details: [`${skillCount} skills available`],\n    };\n  } catch (error) {\n    const message = getErrorMessage(error);\n    return {\n      status: \"fail\",\n      message: \"Failed to load source\",\n      details: [message],\n    };\n  }\n}\n\nconst CHECK_WIDTH = 20;\n\nfunction formatCheckName(name: string): string {\n  return name.padEnd(CHECK_WIDTH);\n}\n\nfunction formatStatus(status: CheckResult[\"status\"]): string {\n  switch (status) {\n    case \"pass\":\n      return \"\\u2713\"; // ✓\n    case \"fail\":\n      return \"\\u2717\"; // ✗\n    case \"warn\":\n      return \"!\";\n    case \"skip\":\n      return \"-\";\n    default:\n      return \"?\";\n  }\n}\n\nfunction formatCheckLine(name: string, result: CheckResult, verbose: boolean): string[] {\n  const statusIcon = formatStatus(result.status);\n  const nameFormatted = formatCheckName(name);\n  const lines: string[] = [];\n\n  lines.push(`  ${nameFormatted}${statusIcon}  ${result.message}`);\n\n  const shouldShowDetails =\n    result.details &&\n    result.details.length > 0 &&\n    (verbose || result.status === \"fail\" || result.status === \"warn\");\n\n  if (shouldShowDetails) {\n    for (const detail of result.details!) {\n      lines.push(`  ${\" \".repeat(CHECK_WIDTH)}   ${detail}`);\n    }\n  }\n\n  return lines;\n}\n\nfunction formatSummary(results: CheckResult[]): string {\n  let passed = 0;\n  let warnings = 0;\n  let errors = 0;\n\n  for (const result of results) {\n    switch (result.status) {\n      case \"pass\":\n        passed++;\n        break;\n      case \"warn\":\n        warnings++;\n        break;\n      case \"fail\":\n        errors++;\n        break;\n      // skip doesn't count\n      default:\n        break;\n    }\n  }\n\n  const parts: string[] = [];\n  parts.push(`${passed} passed`);\n\n  if (warnings > 0) {\n    parts.push(`${warnings} warning${warnings === 1 ? \"\" : \"s\"}`);\n  } else {\n    parts.push(`0 warnings`);\n  }\n\n  if (errors > 0) {\n    parts.push(`${errors} error${errors === 1 ? \"\" : \"s\"}`);\n  } else {\n    parts.push(`0 errors`);\n  }\n\n  return `  Summary: ${parts.join(\", \")}`;\n}\n\nfunction formatTips(results: CheckResult[]): string[] {\n  const hasAgentWarning = results.some(\n    (r) => r.status === \"warn\" && r.message.includes(\"recompilation\"),\n  );\n  const hasConfigError = results.some((r) => r.status === \"fail\" && r.message.includes(\"config\"));\n  const hasSkillError = results.some(\n    (r) => r.status === \"fail\" && r.message.includes(\"skills found\"),\n  );\n\n  const tips: string[] = [];\n\n  if (hasAgentWarning) {\n    tips.push(`  Tip: Run '${CLI_BIN_NAME} compile' to generate missing agent files`);\n  }\n  if (hasConfigError) {\n    tips.push(`  Tip: Run '${CLI_BIN_NAME} init' to create or fix configuration`);\n  }\n  if (hasSkillError) {\n    tips.push(\"  Tip: Check skill IDs in config match available skills\");\n  }\n\n  return tips;\n}\n\nconst SKIP_RESULT: CheckResult = { status: \"skip\", message: \"Skipped (config invalid)\" };\n\nexport default class Doctor extends BaseCommand {\n  static summary = \"Diagnose common configuration issues\";\n\n  static description = `Run diagnostic checks on your ${DEFAULT_BRANDING.NAME} configuration to identify issues with config validity, skill resolution, agent compilation, and source connectivity.`;\n\n  static examples = [\n    \"<%= config.bin %> <%= command.id %>\",\n    \"<%= config.bin %> <%= command.id %> --verbose\",\n    \"<%= config.bin %> <%= command.id %> --source /path/to/marketplace\",\n  ];\n\n  static flags = {\n    source: Flags.string({\n      char: \"s\",\n      description: \"Skills source path or URL\",\n    }),\n    verbose: Flags.boolean({\n      char: \"v\",\n      description: \"Show detailed output\",\n      default: false,\n    }),\n  };\n\n  async run(): Promise<void> {\n    const { flags } = await this.parse(Doctor);\n    setVerbose(flags.verbose);\n    const projectDir = process.cwd();\n\n    this.printHeader();\n    const results = await this.runAllChecks(projectDir, flags);\n    this.printResults(results);\n\n    if (results.some((r) => r.status === \"fail\")) {\n      this.exit(EXIT_CODES.ERROR);\n    }\n  }\n\n  private printHeader(): void {\n    this.log(\"\");\n    this.log(`${DEFAULT_BRANDING.NAME} Doctor`);\n    this.log(\"\");\n    this.log(\"  Checking configuration health...\");\n    this.log(\"\");\n  }\n\n  private async runAllChecks(\n    projectDir: string,\n    flags: { source?: string; verbose: boolean },\n  ): Promise<CheckResult[]> {\n    const detected = await detectProject(projectDir);\n    const { result: configResult, config } = checkConfigValid(detected?.config ?? null);\n    this.logCheck(\"Config Valid\", configResult, flags.verbose);\n\n    // loadSource (called by checkSourceReachable) populates the matrix automatically\n    const sourceResult = await checkSourceReachable(flags.source, projectDir);\n\n    const skillsResult = config\n      ? await checkSkillsResolved(config, matrix, projectDir)\n      : SKIP_RESULT;\n    this.logCheck(\"Skills Resolved\", skillsResult, flags.verbose);\n\n    const agentsResult = config ? await checkAgentsCompiled(config, projectDir) : SKIP_RESULT;\n    this.logCheck(\"Agents Compiled\", agentsResult, flags.verbose);\n\n    const orphansResult = config ? await checkNoOrphans(config, projectDir) : SKIP_RESULT;\n    this.logCheck(\"No Orphans\", orphansResult, flags.verbose);\n\n    this.logCheck(\"Source Reachable\", sourceResult, flags.verbose);\n\n    return [configResult, skillsResult, agentsResult, orphansResult, sourceResult];\n  }\n\n  private logCheck(name: string, result: CheckResult, verbose: boolean): void {\n    for (const line of formatCheckLine(name, result, verbose)) {\n      this.log(line);\n    }\n  }\n\n  private printResults(results: CheckResult[]): void {\n    this.log(\"\");\n    this.log(formatSummary(results));\n\n    const tips = formatTips(results);\n    if (tips.length > 0) {\n      this.log(\"\");\n      for (const tip of tips) {\n        this.log(tip);\n      }\n    }\n\n    this.log(\"\");\n  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