@agents-inc/cli 0.76.0 → 0.78.0

package/dist/commands/compile.js

@@ -2,29 +2,31 @@
 import {
   getAgentDefinitions,
   recompileAgents
-} from "../chunk-VQV3DSHD.js";
+} from "../chunk-SJNUTUSJ.js";
 import {
   ERROR_MESSAGES,
   INFO_MESSAGES,
   STATUS_MESSAGES
 } from "../chunk-M76LNKMY.js";
 import {
+  buildAgentScopeMap,
   detectGlobalInstallation,
   detectProjectInstallation,
   discoverAllPluginSkills,
+  loadProjectConfigFromDir,
   resolveSource
-} from "../chunk-WS3TL2AO.js";
+} from "../chunk-OIHZ2YH3.js";
 import {
   parseFrontmatter
-} from "../chunk-I534EWJQ.js";
+} from "../chunk-IFCASC6R.js";
 import {
   typedEntries,
   typedKeys
-} from "../chunk-JWMYAJHD.js";
+} from "../chunk-FSK4TQX7.js";
 import {
   BaseCommand,
   EXIT_CODES
-} from "../chunk-XYZ7B5BY.js";
+} from "../chunk-7LBYURQR.js";
 import {
   directoryExists,
   fileExists,
@@ -33,15 +35,15 @@ import {
   setVerbose,
   verbose,
   warn
-} from "../chunk-WN2TUP4M.js";
-import "../chunk-Q4PJSAMP.js";
+} from "../chunk-XYPAOBBV.js";
+import "../chunk-32HX6UYI.js";
 import {
   CLI_BIN_NAME,
   GLOBAL_INSTALL_ROOT,
   LOCAL_SKILLS_PATH,
   STANDARD_FILES
 } from "../chunk-FMYAYX6W.js";
-import "../chunk-7XUKTYVD.js";
+import "../chunk-EO6KJI5D.js";
 import {
   init_esm_shims
 } from "../chunk-DHET7RCE.js";
@@ -139,13 +141,15 @@ var Compile = class _Compile extends BaseCommand {
     await this.resolveSourceForCompile(flags);
     const agentDefs = await this.loadAgentDefsForCompile(flags);
     let totalPassesWithSkills = 0;
+    const hasBothScopes = !!globalInstallation && !!projectInstallation;
     if (globalInstallation) {
       const hadSkills = await this.runCompilePass({
         label: "Global",
         projectDir: homeDir,
         installation: globalInstallation,
         agentDefs,
-        flags
+        flags,
+        scopeFilter: hasBothScopes ? "global" : void 0
       });
       if (hadSkills) totalPassesWithSkills++;
     }
@@ -155,7 +159,8 @@ var Compile = class _Compile extends BaseCommand {
         projectDir: cwd,
         installation: projectInstallation,
         agentDefs,
-        flags
+        flags,
+        scopeFilter: hasBothScopes ? "project" : void 0
       });
       if (hadSkills) totalPassesWithSkills++;
     }
@@ -168,38 +173,44 @@ var Compile = class _Compile extends BaseCommand {
   }
   async discoverAllSkills(projectDir = process.cwd()) {
     this.log(STATUS_MESSAGES.DISCOVERING_SKILLS);
-    const pluginSkills = await discoverAllPluginSkills(projectDir);
-    const pluginSkillCount = typedKeys(pluginSkills).length;
-    verbose(`  Found ${pluginSkillCount} skills from installed plugins`);
-    const isGlobalProject = projectDir === GLOBAL_INSTALL_ROOT;
+    const isGlobalProject = projectDir === os.homedir();
+    const globalPluginSkills = isGlobalProject ? {} : await discoverAllPluginSkills(os.homedir());
+    const globalPluginSkillCount = typedKeys(globalPluginSkills).length;
+    if (globalPluginSkillCount > 0) {
+      verbose(`  Found ${globalPluginSkillCount} skills from global plugins`);
+    }
     const globalLocalSkillsDir = path.join(GLOBAL_INSTALL_ROOT, LOCAL_SKILLS_PATH);
     const globalLocalSkills = isGlobalProject ? {} : await loadSkillsFromDir(globalLocalSkillsDir, LOCAL_SKILLS_PATH);
     const globalLocalSkillCount = typedKeys(globalLocalSkills).length;
     if (globalLocalSkillCount > 0) {
       verbose(`  Found ${globalLocalSkillCount} global local skills from ~/.claude/skills/`);
     }
+    const pluginSkills = await discoverAllPluginSkills(projectDir);
+    const pluginSkillCount = typedKeys(pluginSkills).length;
+    verbose(`  Found ${pluginSkillCount} skills from installed plugins`);
     const localSkills = await discoverLocalProjectSkills(projectDir);
     const localSkillCount = typedKeys(localSkills).length;
     verbose(`  Found ${localSkillCount} local skills from .claude/skills/`);
-    const allSkills = mergeSkills(pluginSkills, globalLocalSkills, localSkills);
+    const allSkills = mergeSkills(globalPluginSkills, globalLocalSkills, pluginSkills, localSkills);
     const totalSkillCount = typedKeys(allSkills).length;
     if (totalSkillCount === 0) {
       return { allSkills, totalSkillCount };
     }
-    if (pluginSkillCount > 0 && totalSkillCount > pluginSkillCount) {
-      const localCount = totalSkillCount - pluginSkillCount;
+    const totalPluginSkillCount = globalPluginSkillCount + pluginSkillCount;
+    if (totalPluginSkillCount > 0 && totalSkillCount > totalPluginSkillCount) {
+      const localCount = totalSkillCount - totalPluginSkillCount;
       this.log(
-        `Discovered ${totalSkillCount} skills (${pluginSkillCount} from plugins, ${localCount} local)`
+        `Discovered ${totalSkillCount} skills (${totalPluginSkillCount} from plugins, ${localCount} local)`
       );
-    } else if (pluginSkillCount > 0) {
-      this.log(`Discovered ${pluginSkillCount} skills from plugins`);
+    } else if (totalPluginSkillCount > 0) {
+      this.log(`Discovered ${totalPluginSkillCount} skills from plugins`);
     } else {
       this.log(`Discovered ${totalSkillCount} local skills`);
     }
     return { allSkills, totalSkillCount };
   }
   async runCompilePass(params) {
-    const { label, projectDir, installation, agentDefs, flags } = params;
+    const { label, projectDir, installation, agentDefs, flags, scopeFilter } = params;
     this.log("");
     this.log(`Compiling ${label.toLowerCase()} agents...`);
     this.log("");
@@ -210,6 +221,9 @@ var Compile = class _Compile extends BaseCommand {
       this.log(`No skills found for ${label.toLowerCase()} pass, skipping`);
       return false;
     }
+    const loadedConfig = await loadProjectConfigFromDir(projectDir);
+    const agentScopeMap = loadedConfig?.config ? buildAgentScopeMap(loadedConfig.config) : void 0;
+    const filteredAgents = scopeFilter && loadedConfig?.config?.agents ? loadedConfig.config.agents.filter((a) => a.scope === scopeFilter).map((a) => a.name) : void 0;
     this.log(STATUS_MESSAGES.RECOMPILING_AGENTS);
     try {
       const recompileResult = await recompileAgents({
@@ -217,7 +231,9 @@ var Compile = class _Compile extends BaseCommand {
         sourcePath: agentDefs.sourcePath,
         skills: allSkills,
         projectDir,
-        outputDir: installation.agentsDir
+        outputDir: installation.agentsDir,
+        agentScopeMap,
+        agents: filteredAgents
       });
       if (recompileResult.failed.length > 0) {
         this.log(

package/dist/commands/compile.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../src/cli/commands/compile.ts"],"sourcesContent":["import { Flags } from \"@oclif/core\";\nimport os from \"os\";\nimport path from \"path\";\nimport { BaseCommand } from \"../base-command\";\nimport { setVerbose, verbose, warn } from \"../utils/logger\";\nimport { discoverAllPluginSkills } from \"../lib/plugins\";\nimport { getAgentDefinitions } from \"../lib/agents\";\nimport { resolveSource } from \"../lib/configuration\";\nimport { directoryExists, glob, readFile, fileExists } from \"../utils/fs\";\nimport { recompileAgents } from \"../lib/agents\";\nimport { parseFrontmatter } from \"../lib/loading\";\nimport { CLI_BIN_NAME, GLOBAL_INSTALL_ROOT, LOCAL_SKILLS_PATH, STANDARD_FILES } from \"../consts\";\nimport { EXIT_CODES } from \"../lib/exit-codes\";\nimport { ERROR_MESSAGES, STATUS_MESSAGES, INFO_MESSAGES } from \"../utils/messages\";\nimport {\n  detectGlobalInstallation,\n  detectProjectInstallation,\n  type Installation,\n} from \"../lib/installation\";\nimport type { AgentSourcePaths, SkillDefinition, SkillDefinitionMap, SkillId } from \"../types\";\nimport { typedEntries, typedKeys } from \"../utils/typed-object\";\n\nasync function loadSkillsFromDir(skillsDir: string, pathPrefix = \"\"): Promise<SkillDefinitionMap> {\n  const skills: SkillDefinitionMap = {};\n\n  if (!(await directoryExists(skillsDir))) {\n    return skills;\n  }\n\n  const skillFiles = await glob(\"**/SKILL.md\", skillsDir);\n\n  for (const skillFile of skillFiles) {\n    const skillPath = path.join(skillsDir, skillFile);\n    const skillDir = path.dirname(skillPath);\n    const relativePath = path.relative(skillsDir, skillDir);\n    const skillDirName = path.basename(skillDir);\n\n    const metadataPath = path.join(skillDir, STANDARD_FILES.METADATA_YAML);\n    if (!(await fileExists(metadataPath))) {\n      const displayPath = pathPrefix ? `${pathPrefix}/${relativePath}/` : `${relativePath}/`;\n      warn(\n        `Skill '${skillDirName}' in '${displayPath}' is missing ${STANDARD_FILES.METADATA_YAML} — skipped. Add ${STANDARD_FILES.METADATA_YAML} to register it with the CLI.`,\n      );\n      continue;\n    }\n\n    try {\n      const content = await readFile(skillPath);\n      const frontmatter = parseFrontmatter(content, skillPath);\n\n      if (!frontmatter?.name) {\n        warn(`Skipping skill in '${skillDirName}': missing or invalid frontmatter name`);\n        continue;\n      }\n\n      const canonicalId = frontmatter.name;\n\n      const skill: SkillDefinition = {\n        id: canonicalId,\n        path: pathPrefix ? `${pathPrefix}/${relativePath}/` : `${relativePath}/`,\n        description: frontmatter?.description || \"\",\n      };\n\n      skills[canonicalId] = skill;\n      verbose(`  Loaded skill: ${canonicalId}`);\n    } catch (error) {\n      verbose(`  Failed to load skill: ${skillFile} - ${error}`);\n    }\n  }\n\n  return skills;\n}\n\nasync function discoverLocalProjectSkills(projectDir: string): Promise<SkillDefinitionMap> {\n  const localSkillsDir = path.join(projectDir, LOCAL_SKILLS_PATH);\n  return loadSkillsFromDir(localSkillsDir, LOCAL_SKILLS_PATH);\n}\n\n/** Later sources take precedence over earlier ones */\nfunction mergeSkills(...skillSources: SkillDefinitionMap[]): SkillDefinitionMap {\n  const merged: SkillDefinitionMap = {};\n\n  for (const source of skillSources) {\n    for (const [id, skill] of typedEntries<SkillId, SkillDefinition | undefined>(source)) {\n      if (skill) {\n        merged[id] = skill;\n      }\n    }\n  }\n\n  return merged;\n}\n\ntype CompileFlags = {\n  source?: string;\n  \"agent-source\"?: string;\n  verbose: boolean;\n};\n\ntype DiscoveredSkills = {\n  allSkills: SkillDefinitionMap;\n  totalSkillCount: number;\n};\n\nexport default class Compile extends BaseCommand {\n  static summary = \"Compile agents using local skills and agent definitions\";\n\n  static description =\n    \"Compile agents with resolved skill references. Compiles to the Claude plugin directory.\";\n\n  static examples = [\n    \"<%= config.bin %> <%= command.id %>\",\n    \"<%= config.bin %> <%= command.id %> --verbose\",\n  ];\n\n  static flags = {\n    ...BaseCommand.baseFlags,\n    verbose: Flags.boolean({\n      char: \"v\",\n      description: \"Enable verbose logging\",\n      default: false,\n    }),\n    \"agent-source\": Flags.string({\n      description: \"Remote agent partials source (default: local CLI)\",\n    }),\n  };\n\n  async run(): Promise<void> {\n    const { flags } = await this.parse(Compile);\n\n    setVerbose(flags.verbose);\n\n    const cwd = process.cwd();\n    const homeDir = os.homedir();\n\n    const globalInstallation = await detectGlobalInstallation();\n    // Skip project detection when cwd is home directory to avoid double-compile\n    const projectInstallation = cwd === homeDir ? null : await detectProjectInstallation(cwd);\n\n    if (!globalInstallation && !projectInstallation) {\n      this.error(ERROR_MESSAGES.NO_INSTALLATION, {\n        exit: EXIT_CODES.ERROR,\n      });\n    }\n\n    await this.resolveSourceForCompile(flags);\n    const agentDefs = await this.loadAgentDefsForCompile(flags);\n\n    let totalPassesWithSkills = 0;\n\n    if (globalInstallation) {\n      const hadSkills = await this.runCompilePass({\n        label: \"Global\",\n        projectDir: homeDir,\n        installation: globalInstallation,\n        agentDefs,\n        flags,\n      });\n      if (hadSkills) totalPassesWithSkills++;\n    }\n\n    if (projectInstallation) {\n      const hadSkills = await this.runCompilePass({\n        label: \"Project\",\n        projectDir: cwd,\n        installation: projectInstallation,\n        agentDefs,\n        flags,\n      });\n      if (hadSkills) totalPassesWithSkills++;\n    }\n\n    if (totalPassesWithSkills === 0) {\n      this.error(\n        `No skills found. Add skills with '${CLI_BIN_NAME} add <skill>' or create in .claude/skills/.`,\n        { exit: EXIT_CODES.ERROR },\n      );\n    }\n  }\n\n  private async discoverAllSkills(projectDir: string = process.cwd()): Promise<DiscoveredSkills> {\n    this.log(STATUS_MESSAGES.DISCOVERING_SKILLS);\n\n    const pluginSkills = await discoverAllPluginSkills(projectDir);\n    const pluginSkillCount = typedKeys<SkillId>(pluginSkills).length;\n    verbose(`  Found ${pluginSkillCount} skills from installed plugins`);\n\n    // Load global local skills (skip if projectDir is already the home directory to avoid double-loading)\n    const isGlobalProject = projectDir === GLOBAL_INSTALL_ROOT;\n    const globalLocalSkillsDir = path.join(GLOBAL_INSTALL_ROOT, LOCAL_SKILLS_PATH);\n    const globalLocalSkills = isGlobalProject\n      ? {}\n      : await loadSkillsFromDir(globalLocalSkillsDir, LOCAL_SKILLS_PATH);\n    const globalLocalSkillCount = typedKeys<SkillId>(globalLocalSkills).length;\n    if (globalLocalSkillCount > 0) {\n      verbose(`  Found ${globalLocalSkillCount} global local skills from ~/.claude/skills/`);\n    }\n\n    const localSkills = await discoverLocalProjectSkills(projectDir);\n    const localSkillCount = typedKeys<SkillId>(localSkills).length;\n    verbose(`  Found ${localSkillCount} local skills from .claude/skills/`);\n\n    // Global skills loaded first, project skills second — project wins on conflict (later sources override)\n    const allSkills = mergeSkills(pluginSkills, globalLocalSkills, localSkills);\n    const totalSkillCount = typedKeys<SkillId>(allSkills).length;\n\n    if (totalSkillCount === 0) {\n      return { allSkills, totalSkillCount };\n    }\n\n    if (pluginSkillCount > 0 && totalSkillCount > pluginSkillCount) {\n      const localCount = totalSkillCount - pluginSkillCount;\n      this.log(\n        `Discovered ${totalSkillCount} skills (${pluginSkillCount} from plugins, ${localCount} local)`,\n      );\n    } else if (pluginSkillCount > 0) {\n      this.log(`Discovered ${pluginSkillCount} skills from plugins`);\n    } else {\n      this.log(`Discovered ${totalSkillCount} local skills`);\n    }\n\n    return { allSkills, totalSkillCount };\n  }\n\n  private async runCompilePass(params: {\n    label: string;\n    projectDir: string;\n    installation: Installation;\n    agentDefs: AgentSourcePaths;\n    flags: CompileFlags;\n  }): Promise<boolean> {\n    const { label, projectDir, installation, agentDefs, flags } = params;\n\n    this.log(\"\");\n    this.log(`Compiling ${label.toLowerCase()} agents...`);\n    this.log(\"\");\n\n    verbose(`  Project: ${projectDir}`);\n    verbose(`  Agents: ${installation.agentsDir}`);\n\n    const { allSkills, totalSkillCount } = await this.discoverAllSkills(projectDir);\n\n    if (totalSkillCount === 0) {\n      this.log(`No skills found for ${label.toLowerCase()} pass, skipping`);\n      return false;\n    }\n\n    this.log(STATUS_MESSAGES.RECOMPILING_AGENTS);\n    try {\n      const recompileResult = await recompileAgents({\n        pluginDir: projectDir,\n        sourcePath: agentDefs.sourcePath,\n        skills: allSkills,\n        projectDir,\n        outputDir: installation.agentsDir,\n      });\n\n      if (recompileResult.failed.length > 0) {\n        this.log(\n          `Recompiled ${recompileResult.compiled.length} ${label.toLowerCase()} agents (${recompileResult.failed.length} failed)`,\n        );\n        for (const warning of recompileResult.warnings) {\n          this.warn(warning);\n        }\n      } else if (recompileResult.compiled.length > 0) {\n        this.log(`Recompiled ${recompileResult.compiled.length} ${label.toLowerCase()} agents`);\n      } else {\n        this.log(INFO_MESSAGES.NO_AGENTS_TO_RECOMPILE);\n      }\n\n      if (recompileResult.compiled.length > 0) {\n        verbose(`  Compiled: ${recompileResult.compiled.join(\", \")}`);\n      }\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_COMPILE_AGENTS);\n      this.handleError(error);\n    }\n\n    this.log(\"\");\n    this.logSuccess(`${label} compile complete!`);\n    this.log(\"\");\n\n    return true;\n  }\n\n  private async resolveSourceForCompile(flags: CompileFlags): Promise<void> {\n    this.log(STATUS_MESSAGES.RESOLVING_SOURCE);\n    try {\n      const sourceConfig = await resolveSource(flags.source);\n      this.log(`Source: ${sourceConfig.sourceOrigin}`);\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_RESOLVE_SOURCE);\n      this.handleError(error);\n    }\n  }\n\n  private async loadAgentDefsForCompile(flags: CompileFlags): Promise<AgentSourcePaths> {\n    const projectDir = process.cwd();\n    this.log(\n      flags[\"agent-source\"]\n        ? STATUS_MESSAGES.FETCHING_AGENT_PARTIALS\n        : STATUS_MESSAGES.LOADING_AGENT_PARTIALS,\n    );\n\n    try {\n      const agentDefs = await getAgentDefinitions(flags[\"agent-source\"], {\n        projectDir,\n      });\n      this.log(flags[\"agent-source\"] ? \"Agent partials fetched\" : \"Agent partials loaded\");\n      verbose(`  Agents: ${agentDefs.agentsDir}`);\n      verbose(`  Templates: ${agentDefs.templatesDir}`);\n      return agentDefs;\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_LOAD_AGENT_PARTIALS);\n      return this.handleError(error);\n    }\n  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+{"version":3,"sources":["../../src/cli/commands/compile.ts"],"sourcesContent":["import { Flags } from \"@oclif/core\";\nimport os from \"os\";\nimport path from \"path\";\nimport { BaseCommand } from \"../base-command\";\nimport { setVerbose, verbose, warn } from \"../utils/logger\";\nimport { discoverAllPluginSkills } from \"../lib/plugins\";\nimport { getAgentDefinitions } from \"../lib/agents\";\nimport { resolveSource, loadProjectConfigFromDir } from \"../lib/configuration\";\nimport { directoryExists, glob, readFile, fileExists } from \"../utils/fs\";\nimport { recompileAgents } from \"../lib/agents\";\nimport { parseFrontmatter } from \"../lib/loading\";\nimport { CLI_BIN_NAME, GLOBAL_INSTALL_ROOT, LOCAL_SKILLS_PATH, STANDARD_FILES } from \"../consts\";\nimport { EXIT_CODES } from \"../lib/exit-codes\";\nimport { ERROR_MESSAGES, STATUS_MESSAGES, INFO_MESSAGES } from \"../utils/messages\";\nimport {\n  buildAgentScopeMap,\n  detectGlobalInstallation,\n  detectProjectInstallation,\n  type Installation,\n} from \"../lib/installation\";\nimport type { AgentSourcePaths, SkillDefinition, SkillDefinitionMap, SkillId } from \"../types\";\nimport { typedEntries, typedKeys } from \"../utils/typed-object\";\n\nasync function loadSkillsFromDir(skillsDir: string, pathPrefix = \"\"): Promise<SkillDefinitionMap> {\n  const skills: SkillDefinitionMap = {};\n\n  if (!(await directoryExists(skillsDir))) {\n    return skills;\n  }\n\n  const skillFiles = await glob(\"**/SKILL.md\", skillsDir);\n\n  for (const skillFile of skillFiles) {\n    const skillPath = path.join(skillsDir, skillFile);\n    const skillDir = path.dirname(skillPath);\n    const relativePath = path.relative(skillsDir, skillDir);\n    const skillDirName = path.basename(skillDir);\n\n    const metadataPath = path.join(skillDir, STANDARD_FILES.METADATA_YAML);\n    if (!(await fileExists(metadataPath))) {\n      const displayPath = pathPrefix ? `${pathPrefix}/${relativePath}/` : `${relativePath}/`;\n      warn(\n        `Skill '${skillDirName}' in '${displayPath}' is missing ${STANDARD_FILES.METADATA_YAML} — skipped. Add ${STANDARD_FILES.METADATA_YAML} to register it with the CLI.`,\n      );\n      continue;\n    }\n\n    try {\n      const content = await readFile(skillPath);\n      const frontmatter = parseFrontmatter(content, skillPath);\n\n      if (!frontmatter?.name) {\n        warn(`Skipping skill in '${skillDirName}': missing or invalid frontmatter name`);\n        continue;\n      }\n\n      const canonicalId = frontmatter.name;\n\n      const skill: SkillDefinition = {\n        id: canonicalId,\n        path: pathPrefix ? `${pathPrefix}/${relativePath}/` : `${relativePath}/`,\n        description: frontmatter?.description || \"\",\n      };\n\n      skills[canonicalId] = skill;\n      verbose(`  Loaded skill: ${canonicalId}`);\n    } catch (error) {\n      verbose(`  Failed to load skill: ${skillFile} - ${error}`);\n    }\n  }\n\n  return skills;\n}\n\nasync function discoverLocalProjectSkills(projectDir: string): Promise<SkillDefinitionMap> {\n  const localSkillsDir = path.join(projectDir, LOCAL_SKILLS_PATH);\n  return loadSkillsFromDir(localSkillsDir, LOCAL_SKILLS_PATH);\n}\n\n/** Later sources take precedence over earlier ones */\nfunction mergeSkills(...skillSources: SkillDefinitionMap[]): SkillDefinitionMap {\n  const merged: SkillDefinitionMap = {};\n\n  for (const source of skillSources) {\n    for (const [id, skill] of typedEntries<SkillId, SkillDefinition | undefined>(source)) {\n      if (skill) {\n        merged[id] = skill;\n      }\n    }\n  }\n\n  return merged;\n}\n\ntype CompileFlags = {\n  source?: string;\n  \"agent-source\"?: string;\n  verbose: boolean;\n};\n\ntype DiscoveredSkills = {\n  allSkills: SkillDefinitionMap;\n  totalSkillCount: number;\n};\n\nexport default class Compile extends BaseCommand {\n  static summary = \"Compile agents using local skills and agent definitions\";\n\n  static description =\n    \"Compile agents with resolved skill references. Compiles to the Claude plugin directory.\";\n\n  static examples = [\n    \"<%= config.bin %> <%= command.id %>\",\n    \"<%= config.bin %> <%= command.id %> --verbose\",\n  ];\n\n  static flags = {\n    ...BaseCommand.baseFlags,\n    verbose: Flags.boolean({\n      char: \"v\",\n      description: \"Enable verbose logging\",\n      default: false,\n    }),\n    \"agent-source\": Flags.string({\n      description: \"Remote agent partials source (default: local CLI)\",\n    }),\n  };\n\n  async run(): Promise<void> {\n    const { flags } = await this.parse(Compile);\n\n    setVerbose(flags.verbose);\n\n    const cwd = process.cwd();\n    const homeDir = os.homedir();\n\n    const globalInstallation = await detectGlobalInstallation();\n    // Skip project detection when cwd is home directory to avoid double-compile\n    const projectInstallation = cwd === homeDir ? null : await detectProjectInstallation(cwd);\n\n    if (!globalInstallation && !projectInstallation) {\n      this.error(ERROR_MESSAGES.NO_INSTALLATION, {\n        exit: EXIT_CODES.ERROR,\n      });\n    }\n\n    await this.resolveSourceForCompile(flags);\n    const agentDefs = await this.loadAgentDefsForCompile(flags);\n\n    let totalPassesWithSkills = 0;\n\n    // When both installations exist, filter each pass to its own scope to prevent\n    // the project pass from overwriting global agents with zero-skill versions\n    // (the project config's stack only has project agent entries).\n    const hasBothScopes = !!globalInstallation && !!projectInstallation;\n\n    if (globalInstallation) {\n      const hadSkills = await this.runCompilePass({\n        label: \"Global\",\n        projectDir: homeDir,\n        installation: globalInstallation,\n        agentDefs,\n        flags,\n        scopeFilter: hasBothScopes ? \"global\" : undefined,\n      });\n      if (hadSkills) totalPassesWithSkills++;\n    }\n\n    if (projectInstallation) {\n      const hadSkills = await this.runCompilePass({\n        label: \"Project\",\n        projectDir: cwd,\n        installation: projectInstallation,\n        agentDefs,\n        flags,\n        scopeFilter: hasBothScopes ? \"project\" : undefined,\n      });\n      if (hadSkills) totalPassesWithSkills++;\n    }\n\n    if (totalPassesWithSkills === 0) {\n      this.error(\n        `No skills found. Add skills with '${CLI_BIN_NAME} add <skill>' or create in .claude/skills/.`,\n        { exit: EXIT_CODES.ERROR },\n      );\n    }\n  }\n\n  private async discoverAllSkills(projectDir: string = process.cwd()): Promise<DiscoveredSkills> {\n    this.log(STATUS_MESSAGES.DISCOVERING_SKILLS);\n\n    // Load global plugins (skip if projectDir is already the home directory to avoid double-loading)\n    const isGlobalProject = projectDir === os.homedir();\n    const globalPluginSkills = isGlobalProject ? {} : await discoverAllPluginSkills(os.homedir());\n    const globalPluginSkillCount = typedKeys<SkillId>(globalPluginSkills).length;\n    if (globalPluginSkillCount > 0) {\n      verbose(`  Found ${globalPluginSkillCount} skills from global plugins`);\n    }\n\n    // Load global local skills (skip if projectDir is already the home directory to avoid double-loading)\n    const globalLocalSkillsDir = path.join(GLOBAL_INSTALL_ROOT, LOCAL_SKILLS_PATH);\n    const globalLocalSkills = isGlobalProject\n      ? {}\n      : await loadSkillsFromDir(globalLocalSkillsDir, LOCAL_SKILLS_PATH);\n    const globalLocalSkillCount = typedKeys<SkillId>(globalLocalSkills).length;\n    if (globalLocalSkillCount > 0) {\n      verbose(`  Found ${globalLocalSkillCount} global local skills from ~/.claude/skills/`);\n    }\n\n    const pluginSkills = await discoverAllPluginSkills(projectDir);\n    const pluginSkillCount = typedKeys<SkillId>(pluginSkills).length;\n    verbose(`  Found ${pluginSkillCount} skills from installed plugins`);\n\n    const localSkills = await discoverLocalProjectSkills(projectDir);\n    const localSkillCount = typedKeys<SkillId>(localSkills).length;\n    verbose(`  Found ${localSkillCount} local skills from .claude/skills/`);\n\n    // Global skills loaded first, project skills second — project wins on conflict (later sources override)\n    const allSkills = mergeSkills(globalPluginSkills, globalLocalSkills, pluginSkills, localSkills);\n    const totalSkillCount = typedKeys<SkillId>(allSkills).length;\n\n    if (totalSkillCount === 0) {\n      return { allSkills, totalSkillCount };\n    }\n\n    const totalPluginSkillCount = globalPluginSkillCount + pluginSkillCount;\n    if (totalPluginSkillCount > 0 && totalSkillCount > totalPluginSkillCount) {\n      const localCount = totalSkillCount - totalPluginSkillCount;\n      this.log(\n        `Discovered ${totalSkillCount} skills (${totalPluginSkillCount} from plugins, ${localCount} local)`,\n      );\n    } else if (totalPluginSkillCount > 0) {\n      this.log(`Discovered ${totalPluginSkillCount} skills from plugins`);\n    } else {\n      this.log(`Discovered ${totalSkillCount} local skills`);\n    }\n\n    return { allSkills, totalSkillCount };\n  }\n\n  private async runCompilePass(params: {\n    label: string;\n    projectDir: string;\n    installation: Installation;\n    agentDefs: AgentSourcePaths;\n    flags: CompileFlags;\n    /** When true, only compile agents matching this scope (filters out agents handled by another pass) */\n    scopeFilter?: \"project\" | \"global\";\n  }): Promise<boolean> {\n    const { label, projectDir, installation, agentDefs, flags, scopeFilter } = params;\n\n    this.log(\"\");\n    this.log(`Compiling ${label.toLowerCase()} agents...`);\n    this.log(\"\");\n\n    verbose(`  Project: ${projectDir}`);\n    verbose(`  Agents: ${installation.agentsDir}`);\n\n    const { allSkills, totalSkillCount } = await this.discoverAllSkills(projectDir);\n\n    if (totalSkillCount === 0) {\n      this.log(`No skills found for ${label.toLowerCase()} pass, skipping`);\n      return false;\n    }\n\n    // Load config to build scope map so agents are routed to the correct directory\n    const loadedConfig = await loadProjectConfigFromDir(projectDir);\n    const agentScopeMap = loadedConfig?.config\n      ? buildAgentScopeMap(loadedConfig.config)\n      : undefined;\n\n    // When a scope filter is active, only compile agents matching that scope.\n    // This prevents the project pass from overwriting global agents (which were already compiled\n    // in the global pass) with zero-skill versions (the project stack only has project entries).\n    const filteredAgents =\n      scopeFilter && loadedConfig?.config?.agents\n        ? loadedConfig.config.agents.filter((a) => a.scope === scopeFilter).map((a) => a.name)\n        : undefined;\n\n    this.log(STATUS_MESSAGES.RECOMPILING_AGENTS);\n    try {\n      const recompileResult = await recompileAgents({\n        pluginDir: projectDir,\n        sourcePath: agentDefs.sourcePath,\n        skills: allSkills,\n        projectDir,\n        outputDir: installation.agentsDir,\n        agentScopeMap,\n        agents: filteredAgents,\n      });\n\n      if (recompileResult.failed.length > 0) {\n        this.log(\n          `Recompiled ${recompileResult.compiled.length} ${label.toLowerCase()} agents (${recompileResult.failed.length} failed)`,\n        );\n        for (const warning of recompileResult.warnings) {\n          this.warn(warning);\n        }\n      } else if (recompileResult.compiled.length > 0) {\n        this.log(`Recompiled ${recompileResult.compiled.length} ${label.toLowerCase()} agents`);\n      } else {\n        this.log(INFO_MESSAGES.NO_AGENTS_TO_RECOMPILE);\n      }\n\n      if (recompileResult.compiled.length > 0) {\n        verbose(`  Compiled: ${recompileResult.compiled.join(\", \")}`);\n      }\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_COMPILE_AGENTS);\n      this.handleError(error);\n    }\n\n    this.log(\"\");\n    this.logSuccess(`${label} compile complete!`);\n    this.log(\"\");\n\n    return true;\n  }\n\n  private async resolveSourceForCompile(flags: CompileFlags): Promise<void> {\n    this.log(STATUS_MESSAGES.RESOLVING_SOURCE);\n    try {\n      const sourceConfig = await resolveSource(flags.source);\n      this.log(`Source: ${sourceConfig.sourceOrigin}`);\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_RESOLVE_SOURCE);\n      this.handleError(error);\n    }\n  }\n\n  private async loadAgentDefsForCompile(flags: CompileFlags): Promise<AgentSourcePaths> {\n    const projectDir = process.cwd();\n    this.log(\n      flags[\"agent-source\"]\n        ? STATUS_MESSAGES.FETCHING_AGENT_PARTIALS\n        : STATUS_MESSAGES.LOADING_AGENT_PARTIALS,\n    );\n\n    try {\n      const agentDefs = await getAgentDefinitions(flags[\"agent-source\"], {\n        projectDir,\n      });\n      this.log(flags[\"agent-source\"] ? \"Agent partials fetched\" : \"Agent partials loaded\");\n      verbose(`  Agents: ${agentDefs.agentsDir}`);\n      verbose(`  Templates: ${agentDefs.templatesDir}`);\n      return agentDefs;\n    } catch (error) {\n      this.log(ERROR_MESSAGES.FAILED_LOAD_AGENT_PARTIALS);\n      return this.handleError(error);\n    }\n  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package/dist/commands/config/index.js

@@ -1,15 +1,15 @@
 #!/usr/bin/env node
 import {
   ConfigShow
-} from "../../chunk-CKU7FJNV.js";
-import "../../chunk-WS3TL2AO.js";
-import "../../chunk-I534EWJQ.js";
-import "../../chunk-JWMYAJHD.js";
-import "../../chunk-XYZ7B5BY.js";
-import "../../chunk-WN2TUP4M.js";
-import "../../chunk-Q4PJSAMP.js";
+} from "../../chunk-7HGMFJ4Y.js";
+import "../../chunk-OIHZ2YH3.js";
+import "../../chunk-IFCASC6R.js";
+import "../../chunk-FSK4TQX7.js";
+import "../../chunk-7LBYURQR.js";
+import "../../chunk-XYPAOBBV.js";
+import "../../chunk-32HX6UYI.js";
 import "../../chunk-FMYAYX6W.js";
-import "../../chunk-7XUKTYVD.js";
+import "../../chunk-EO6KJI5D.js";
 import {
   init_esm_shims
 } from "../../chunk-DHET7RCE.js";

package/dist/commands/config/path.js

@@ -1,16 +1,16 @@
 #!/usr/bin/env node
 import {
   getProjectConfigPath
-} from "../../chunk-WS3TL2AO.js";
-import "../../chunk-I534EWJQ.js";
-import "../../chunk-JWMYAJHD.js";
+} from "../../chunk-OIHZ2YH3.js";
+import "../../chunk-IFCASC6R.js";
+import "../../chunk-FSK4TQX7.js";
 import {
   BaseCommand
-} from "../../chunk-XYZ7B5BY.js";
-import "../../chunk-WN2TUP4M.js";
-import "../../chunk-Q4PJSAMP.js";
+} from "../../chunk-7LBYURQR.js";
+import "../../chunk-XYPAOBBV.js";
+import "../../chunk-32HX6UYI.js";
 import "../../chunk-FMYAYX6W.js";
-import "../../chunk-7XUKTYVD.js";
+import "../../chunk-EO6KJI5D.js";
 import {
   init_esm_shims
 } from "../../chunk-DHET7RCE.js";

package/dist/commands/config/show.js

@@ -1,15 +1,15 @@
 #!/usr/bin/env node
 import {
   ConfigShow
-} from "../../chunk-CKU7FJNV.js";
-import "../../chunk-WS3TL2AO.js";
-import "../../chunk-I534EWJQ.js";
-import "../../chunk-JWMYAJHD.js";
-import "../../chunk-XYZ7B5BY.js";
-import "../../chunk-WN2TUP4M.js";
-import "../../chunk-Q4PJSAMP.js";
+} from "../../chunk-7HGMFJ4Y.js";
+import "../../chunk-OIHZ2YH3.js";
+import "../../chunk-IFCASC6R.js";
+import "../../chunk-FSK4TQX7.js";
+import "../../chunk-7LBYURQR.js";
+import "../../chunk-XYPAOBBV.js";
+import "../../chunk-32HX6UYI.js";
 import "../../chunk-FMYAYX6W.js";
-import "../../chunk-7XUKTYVD.js";
+import "../../chunk-EO6KJI5D.js";
 import "../../chunk-DHET7RCE.js";
 export {
   ConfigShow as default

package/dist/commands/diff.js

@@ -2,26 +2,26 @@
 import {
   loadSkillsMatrixFromSource,
   readForkedFromMetadata
-} from "../chunk-WS3TL2AO.js";
-import "../chunk-I534EWJQ.js";
-import "../chunk-JWMYAJHD.js";
+} from "../chunk-OIHZ2YH3.js";
+import "../chunk-IFCASC6R.js";
+import "../chunk-FSK4TQX7.js";
 import {
   BaseCommand,
   EXIT_CODES
-} from "../chunk-XYZ7B5BY.js";
+} from "../chunk-7LBYURQR.js";
 import {
   fileExists,
   getErrorMessage,
   listDirectories,
   readFile
-} from "../chunk-WN2TUP4M.js";
-import "../chunk-Q4PJSAMP.js";
+} from "../chunk-XYPAOBBV.js";
+import "../chunk-32HX6UYI.js";
 import {
   CLI_BIN_NAME,
   LOCAL_SKILLS_PATH,
   STANDARD_FILES
 } from "../chunk-FMYAYX6W.js";
-import "../chunk-7XUKTYVD.js";
+import "../chunk-EO6KJI5D.js";
 import {
   init_esm_shims
 } from "../chunk-DHET7RCE.js";
@@ -532,6 +532,7 @@ var chalkStderr = createChalk({ level: stderrColor ? stderrColor.level : 0 });
 var source_default = chalk;
 
 // src/cli/commands/diff.ts
+import os2 from "os";
 import path from "path";
 import { createTwoFilesPatch } from "diff";
 function colorDiff(diffText) {
@@ -647,8 +648,12 @@ var Diff = class _Diff extends BaseCommand {
   async run() {
     const { args, flags } = await this.parse(_Diff);
     const projectDir = process.cwd();
-    const localSkillsPath = path.join(projectDir, LOCAL_SKILLS_PATH);
-    if (!await fileExists(localSkillsPath)) {
+    const homeDir = os2.homedir();
+    const projectLocalPath = path.join(projectDir, LOCAL_SKILLS_PATH);
+    const globalLocalPath = path.join(homeDir, LOCAL_SKILLS_PATH);
+    const hasProject = await fileExists(projectLocalPath);
+    const hasGlobal = projectDir !== homeDir && await fileExists(globalLocalPath);
+    if (!hasProject && !hasGlobal) {
       if (!flags.quiet) {
         this.warn(
           `No local skills found. Run '${CLI_BIN_NAME} init' or '${CLI_BIN_NAME} edit' first.`
@@ -674,24 +679,39 @@ var Diff = class _Diff extends BaseCommand {
           sourceSkills[skillId] = { path: skill.path };
         }
       }
-      let skillDirs = await listDirectories(localSkillsPath);
+      const scopedDirs = [];
+      if (hasProject) {
+        for (const dirName of await listDirectories(projectLocalPath)) {
+          scopedDirs.push({ dirName, localSkillsPath: projectLocalPath });
+        }
+      }
+      if (hasGlobal) {
+        const projectDirNames = new Set(scopedDirs.map((d) => d.dirName));
+        for (const dirName of await listDirectories(globalLocalPath)) {
+          if (!projectDirNames.has(dirName)) {
+            scopedDirs.push({ dirName, localSkillsPath: globalLocalPath });
+          }
+        }
+      }
       if (args.skill) {
-        skillDirs = skillDirs.filter((dir) => dir === args.skill);
-        if (skillDirs.length === 0) {
+        const filtered = scopedDirs.filter((d) => d.dirName === args.skill);
+        if (filtered.length === 0) {
           if (!flags.quiet) {
             this.error(`Skill '${args.skill}' not found in local skills`, {
               exit: EXIT_CODES.ERROR
             });
           }
         }
+        scopedDirs.length = 0;
+        scopedDirs.push(...filtered);
       }
       const results = [];
       const skillsWithoutForkedFrom = [];
-      for (const skillDirName of skillDirs) {
-        const result = await diffSkill(localSkillsPath, skillDirName, sourcePath, sourceSkills);
+      for (const { dirName, localSkillsPath } of scopedDirs) {
+        const result = await diffSkill(localSkillsPath, dirName, sourcePath, sourceSkills);
         results.push(result);
         if (!result.forkedFrom) {
-          skillsWithoutForkedFrom.push(skillDirName);
+          skillsWithoutForkedFrom.push(dirName);
         }
       }
       const skillsWithDiffs = results.filter((r) => r.hasDiff);