@agents-inc/cli 0.60.1 → 0.64.0

package/CHANGELOG.md

@@ -9,6 +9,54 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ---
 
+## [0.64.0] - 2026-03-10
+
+**Dual-installation scope splitting, config writer named variables, global defaults**
+
+- Scope-aware config splitting: global items write to `~/.claude-src/`, project items import from global (D-76/D-80)
+- Config writer extracts typed named variables above export default for readability (D-81)
+- Default scope changed to global; methodology skill auto-injection removed
+
+See [changelogs/0.64.0.md](./changelogs/0.64.0.md) for full details.
+
+---
+
+## [0.63.0] - 2026-03-09
+
+**Wizard UX polish, hotkey registry, store-only matrix access**
+
+- Centralize wizard hotkeys into `hotkeys.ts` registry with `isHotkey()` helper
+- Remove `--output` flag from compile, remove `label` from `SourceOption`
+- Replace direct `matrix.skills[id]` with store accessors in 7 production files
+
+See [changelogs/0.63.0.md](./changelogs/0.63.0.md) for full details.
+
+---
+
+## [0.62.0] - 2026-03-09
+
+**Matrix store — centralized skill lookups, remove parameter threading**
+
+- `useMatrixStore` Zustand store replaces matrix parameter threading across resolver, wizard, config, and all commands
+- Remove `matrix` parameter from 9 resolver functions, 4 wizard store functions, 3 build-step functions, and config generator
+- Remove redundant `slug`/`displayName`/`description` from `SkillOption` — derive from store
+
+See [changelogs/0.62.0.md](./changelogs/0.62.0.md) for full details.
+
+---
+
+## [0.61.0] - 2026-03-08
+
+**Dual-pass compile for global and project installations**
+
+- `compile` detects both global and project installations, runs independent passes for each
+- `writeProjectConfig()` E2E helper with `ProjectConfig` typing, all inline config writes migrated
+- 6 new dual-scope E2E tests covering scope isolation, single-installation fallbacks, and verbose output
+
+See [changelogs/0.61.0.md](./changelogs/0.61.0.md) for full details.
+
+---
+
 ## [0.60.1] - 2026-03-08
 
 **Type redundancy cleanup and test infrastructure improvements**

package/README.md

@@ -1,189 +1,40 @@
-<p align="center">
-  <img alt="Agents Inc" src="./assets/logo.svg" width="300">
-</p>
+# cli
 
-# Agents Inc
+Private marketplace for custom skills and stacks.
 
-An agent composition framework that builds stacks and compiles specialized subagents for [Claude Code](https://docs.anthropic.com/en/docs/claude-code). Manage your subagents and skills with code via a unified CLI.
+## Directory Structure
 
-[![npm version](https://img.shields.io/npm/v/@agents-inc/cli)](https://www.npmjs.com/package/@agents-inc/cli)
-[![TypeScript](https://img.shields.io/badge/TypeScript-strict-blue.svg)](https://www.typescriptlang.org/)
-[![License: MIT](https://img.shields.io/badge/License-MIT-blue.svg)](./LICENSE)
-[![Node: 18+](https://img.shields.io/badge/Node-18%2B-green.svg)](https://nodejs.org/)
-
-<!-- TODO: Add animated GIF of the full init wizard flow (stack selection -> skill grid -> agent config -> done).
-This is the hero image. It should show the complete happy path in ~15-20 seconds.
-<p align="center">
-  <img src="./assets/init-wizard.gif" alt="Agents Inc init wizard" width="700">
-</p>
--->
-
-## Overview
-
-Agents Inc comprises two parts:
-
-- **[Marketplace](https://github.com/agents-inc/skills):** 87+ atomic, best-practice skills spanning web, API, CLI, infra, and meta domains
-- **CLI:** installs, ejects, creates, compiles, and updates skills and subagents
-
-Skills are composed into 18+ domain-specific subagents through templates and modular agent partials, all validated against strict Zod schemas. Everything is ejectable so there's endless customisation with no lock-in.
-
-## How It Works
-
-Each subagent is composed from modular partials (role, workflow, output format) plus a set of atomic skills. The CLI manages the full lifecycle:
-
-- **Install:** pull skills from the public marketplace, your own, or a local directory either as plugins or directly as source files
-- **Compose:** map skills to subagents, configure preloaded vs dynamic loading
-- **Compile:** resolve skill mappings, Liquid templates, and agent partials into `.claude/agents/`
-- **Eject:** take progressive ownership of any layer (partials, templates, skills, subagents)
-- **Update:** pull upstream skill changes without losing local customizations
+```
+config/stacks.ts         # Stack definitions (agent groupings with skill mappings)
+src/skills/                # Custom skill definitions
+```
 
-## Getting Started
+## Creating Skills
 
 ```bash
-npx @agents-inc/cli init
+agentsinc new skill <name> --category <category-name>
 ```
 
-Requires Node 18+ and [Claude Code](https://docs.anthropic.com/en/docs/claude-code).
-
-The wizard has three steps:
-
-**1. Pick a stack or start from scratch** (or create your own in your custom marketplace):
-
-| Stack              | Technologies                                                       |
-| ------------------ | ------------------------------------------------------------------ |
-| `nextjs-fullstack` | Next.js + React + Hono + Drizzle + PostHog + Zustand + React Query |
-| `angular-stack`    | Angular 19 + Signals + NgRx SignalStore + Hono + Drizzle           |
-| `vue-stack`        | Vue 3 Composition API + Pinia + Hono + Drizzle                     |
-| `nuxt-stack`       | Nuxt + Vue 3 full-stack + Pinia + Hono + Drizzle                   |
-| `remix-stack`      | Remix + React + Hono + Drizzle                                     |
-| `solidjs-stack`    | SolidJS + Hono + Drizzle                                           |
-
-**2. Customize skills.** Add or remove from the interactive grid.
-
-**3. Select subagents.** Choose which role-based subagents to include.
-
-**4. Compile.** After init, use `agentsinc edit` to change selections and `agentsinc compile` to rebuild.
-
-## Skills
-
-87+ skills organized by category:
-
-**Web:** `React` `Vue` `Angular` `SolidJS` `Next.js` `Remix` `Nuxt` `SCSS Modules` `CVA` `Zustand` `Pinia` `NgRx SignalStore` `Jotai` `React Query` `SWR` `tRPC` `GraphQL` `React Hook Form` `Zod` `shadcn/ui` `Radix UI` `TanStack Table` `Vitest` `Playwright` `Cypress` `MSW` `Framer Motion` `Storybook` `Accessibility`
-
-**API:** `Hono` `Express` `Fastify` `Drizzle` `Prisma` `Better Auth` `PostHog` `Resend` `Axiom + Pino + Sentry` `GitHub Actions`
-
-**Mobile:** `React Native` `Expo`
-
-**CLI:** `Commander` `oclif + Ink`
+Each skill lives in `src/skills/<skill-name>/` with:
 
-**Infra:** `Turborepo` `Tooling` `Env config`
+- `SKILL.md` -- Skill content (what the skill teaches)
+- `metadata.yaml` -- Skill metadata (category, author, description, custom: true)
 
-**Meta:** `Code reviewing` `Research methodology` `Investigation requirements` `Anti-over-engineering` `Context management`
+## Using This Marketplace
 
-## Subagents
-
-17 roles across 7 categories:
-
-| Category         | Subagents                                                          |
-| ---------------- | ------------------------------------------------------------------ |
-| Developers       | `web-developer` `api-developer` `cli-developer` `web-architecture` |
-| Reviewers        | `web-reviewer` `api-reviewer` `cli-reviewer`                       |
-| Testers          | `web-tester` `cli-tester`                                          |
-| Researchers      | `web-researcher` `api-researcher`                                  |
-| Planning         | `web-pm`                                                           |
-| Pattern Analysis | `pattern-scout` `web-pattern-critique`                             |
-| Documentation    | `documentor`                                                       |
-| Meta             | `skill-summoner` `agent-summoner`                                  |
-
-## Commands
-
-### Primary
-
-| Command   | Description                                                                 |
-| --------- | --------------------------------------------------------------------------- |
-| `init`    | Interactive setup wizard: pick a stack, customize skills, compile subagents |
-| `edit`    | Modify skill selection in the interactive wizard                            |
-| `compile` | Recompile subagents after changes                                           |
-| `update`  | Pull latest skills from source                                              |
-
-### Customization
-
-| Command        | Description                                                                                                       |
-| -------------- | ----------------------------------------------------------------------------------------------------------------- |
-| `eject <type>` | Export for customization (`agent-partials`, `templates`, `skills`, `all`)                                         |
-| `new skill`    | Scaffold a custom skill ![Coming soon](https://img.shields.io/badge/coming%20soon-grey)                           |
-| `new agent`    | Scaffold a custom agent ![Coming soon](https://img.shields.io/badge/coming%20soon-grey)                           |
-| `import skill` | Import a skill from an external GitHub repository ![Coming soon](https://img.shields.io/badge/coming%20soon-grey) |
-| `search`       | Search skills across sources ![Coming soon](https://img.shields.io/badge/coming%20soon-grey)                      |
-
-### Diagnostics
-
-| Command     | Description                                                                                                  |
-| ----------- | ------------------------------------------------------------------------------------------------------------ |
-| `doctor`    | Diagnose setup issues                                                                                        |
-| `diff`      | Show changes between local and source skills ![Coming soon](https://img.shields.io/badge/coming%20soon-grey) |
-| `outdated`  | Check for skill updates                                                                                      |
-| `validate`  | Validate config and skill structure                                                                          |
-| `info`      | Show project configuration details                                                                           |
-| `uninstall` | Remove Agents Inc from your project                                                                          |
-
-Run `agentsinc --help` for full usage.
-
-## Customization
-
-Progressive layers from config to full extension:
-
-| Layer           | How                                                                                            |
-| --------------- | ---------------------------------------------------------------------------------------------- |
-| Edit config     | `.claude-src/config.yaml`; skill-to-subagent mappings, preloaded/dynamic                       |
-| Wizard          | `agentsinc edit`; add/remove skills interactively                                              |
-| Eject partials  | `agentsinc eject agent-partials`; customize agent partials such as intro, workflow, and output |
-| Eject templates | `agentsinc eject templates`; modify Liquid templates                                           |
-| Eject skills    | `agentsinc eject skills`; fork skills for local editing                                        |
-| Custom skills   | `agentsinc new skill`; scaffold with proper metadata                                           |
-| Custom agents   | `agentsinc new agent`; scaffold agent files                                                    |
-| Custom sources  | Point to a private repo or local directory as a skill source                                   |
-| Plugins         | Package skills/subagents as Claude Code plugins for distribution                               |
-
-Templates apply globally across all subagents; partials apply to specific roles. Put shared conventions in a template for consistency, and role-specific behaviour in partials.
-
-Import skills from any GitHub repository:
+Point the CLI at this marketplace as a source:
 
 ```bash
-agentsinc import skill github:your-org/skills --list
-agentsinc import skill github:your-org/skills --skill react-best-practices
-agentsinc import skill github:your-org/skills --all
-```
-
-## Tech Stack
-
-| Component    | Technology                            |
-| ------------ | ------------------------------------- |
-| Commands     | oclif                                 |
-| Terminal UI  | Ink + React                           |
-| Wizard state | Zustand                               |
-| Validation   | Zod (30+ schemas at parse boundaries) |
-| Compilation  | LiquidJS                              |
-| Testing      | Vitest                                |
+# Local development
+agentsinc init --source /path/to/cli
 
+# From a git repository
+agentsinc init --source github:your-org/cli
 ```
-src/cli/
-  commands/       # oclif command definitions
-  components/     # Ink/React terminal UI components
-  lib/            # Core logic (compiler, loader, resolver, schemas)
-  stores/         # Zustand state management
-  utils/          # Shared utilities
-src/agents/       # Subagent definitions (18 roles)
-config/           # Skills matrix, stacks, default mappings
-```
-
-See [docs/reference/architecture.md](./docs/reference/architecture.md) for the full reference.
-
-## Links
 
-- [Plugin Marketplace](https://github.com/agents-inc/skills): browse and discover skills
-- [Architecture Reference](./docs/reference/architecture.md): full system documentation
-
-## License
+## How It Works
 
-MIT
+The CLI auto-discovers skills from the `src/skills/` directory
+and stacks from `config/stacks.ts`.
+Custom categories are discovered from skill `metadata.yaml` files with `custom: true`.
+Custom skills appear alongside built-in ones in the wizard. No manual registration needed.

package/dist/{chunk-G6WHCALR.js → chunk-3YNT3NX3.js}

@@ -1,11 +1,11 @@
 #!/usr/bin/env node
 import {
   Wizard
-} from "./chunk-6G3KZSO4.js";
+} from "./chunk-OORWBS6F.js";
 import {
   STATUS_MESSAGES,
   SUCCESS_MESSAGES
-} from "./chunk-MR6OBL3B.js";
+} from "./chunk-CXRVM7BA.js";
 import {
   claudePluginInstall,
   claudePluginMarketplaceAdd,
@@ -21,11 +21,15 @@ import {
   installPluginConfig,
   loadProjectConfig,
   loadSkillsMatrixFromSource
-} from "./chunk-TZXYBG3R.js";
+} from "./chunk-53URJ5XK.js";
+import {
+  getSkill,
+  useMatrixStore
+} from "./chunk-BKL3DF2Q.js";
 import {
   BaseCommand,
   EXIT_CODES
-} from "./chunk-VR3CDXDT.js";
+} from "./chunk-EE5EPS32.js";
 import {
   disableBuffering,
   drainBuffer,
@@ -36,7 +40,7 @@ import {
   settingsFileSchema,
   warn,
   warnUnknownFields
-} from "./chunk-LWXRUR6B.js";
+} from "./chunk-LMZXL5RQ.js";
 import {
   ASCII_LOGO,
   CLAUDE_DIR,
@@ -46,7 +50,7 @@ import {
   DEFAULT_BRANDING,
   GLOBAL_INSTALL_ROOT,
   MAX_CONFIG_FILE_SIZE
-} from "./chunk-6OWHQ7HM.js";
+} from "./chunk-EGMQ3SXN.js";
 import {
   init_esm_shims
 } from "./chunk-DHET7RCE.js";
@@ -407,11 +411,11 @@ var Init = class _Init extends BaseCommand {
     disableBuffering();
     let wizardResult = null;
     const marketplaceLabel = getMarketplaceLabel(sourceResult);
+    useMatrixStore.getState().setMatrix(sourceResult.matrix);
     const { waitUntilExit } = render(
       /* @__PURE__ */ jsx2(
         Wizard,
         {
-          matrix: sourceResult.matrix,
           version: this.config.version,
           marketplaceLabel,
           logo: ASCII_LOGO,
@@ -530,7 +534,6 @@ var Init = class _Init extends BaseCommand {
     }
   }
   async installLocalMode(result, sourceResult, flags, projectDir) {
-    const matrix = sourceResult.matrix;
     this.log("Copying skills to local directory...");
     try {
       const installResult = await installLocal({
@@ -555,8 +558,7 @@ var Init = class _Init extends BaseCommand {
       this.log("Skills copied to:");
       this.log(`  ${installResult.skillsDir}`);
       for (const copiedSkill of installResult.copiedSkills) {
-        const skill = matrix.skills[copiedSkill.skillId];
-        const displayName = skill?.displayName || copiedSkill.skillId;
+        const displayName = getSkill(copiedSkill.skillId).displayName;
         this.log(`    ${displayName}/`);
       }
       this.log("");
@@ -590,4 +592,4 @@ export {
   showDashboard,
   Init
 };
-//# sourceMappingURL=chunk-G6WHCALR.js.map
+//# sourceMappingURL=chunk-3YNT3NX3.js.map

package/dist/chunk-3YNT3NX3.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/commands/init.tsx","../src/cli/lib/permission-checker.tsx"],"sourcesContent":["import React, { useState } from \"react\";\n\nimport { Flags } from \"@oclif/core\";\nimport { render, Box, Text, useApp, useInput } from \"ink\";\nimport os from \"os\";\nimport path from \"path\";\n\nimport { BaseCommand } from \"../base-command.js\";\nimport { Wizard, type WizardResultV2 } from \"../components/wizard/wizard.js\";\nimport {\n  loadSkillsMatrixFromSource,\n  getMarketplaceLabel,\n  type SourceLoadResult,\n} from \"../lib/loading/index.js\";\nimport {\n  installLocal,\n  installPluginConfig,\n  detectGlobalInstallation,\n  detectProjectInstallation,\n  deriveInstallMode,\n} from \"../lib/installation/index.js\";\nimport { checkPermissions } from \"../lib/permission-checker.js\";\nimport { getInstallationInfo } from \"../lib/plugins/plugin-info.js\";\nimport { hasIndividualPlugins } from \"../lib/plugins/index.js\";\nimport {\n  claudePluginInstall,\n  claudePluginMarketplaceExists,\n  claudePluginMarketplaceAdd,\n} from \"../utils/exec.js\";\nimport {\n  ASCII_LOGO,\n  CLAUDE_SRC_DIR,\n  CLI_BIN_NAME,\n  CLI_COLORS,\n  DEFAULT_BRANDING,\n  GLOBAL_INSTALL_ROOT,\n} from \"../consts.js\";\nimport { getErrorMessage } from \"../utils/errors.js\";\nimport { EXIT_CODES } from \"../lib/exit-codes.js\";\nimport { getSkill, useMatrixStore } from \"../stores/matrix-store\";\nimport { loadProjectConfig } from \"../lib/configuration/project-config.js\";\nimport {\n  enableBuffering,\n  drainBuffer,\n  disableBuffering,\n  type StartupMessage,\n} from \"../utils/logger.js\";\nimport { SUCCESS_MESSAGES, STATUS_MESSAGES } from \"../utils/messages.js\";\nimport { ensureBlankGlobalConfig } from \"../lib/configuration/config-writer.js\";\n\ntype DashboardOption = {\n  label: string;\n  command: string;\n};\n\nconst DASHBOARD_OPTIONS: DashboardOption[] = [\n  { label: \"Edit\", command: \"edit\" },\n  { label: \"Compile\", command: \"compile\" },\n  { label: \"Doctor\", command: \"doctor\" },\n  { label: \"List\", command: \"list\" },\n];\n\ntype DashboardProps = DashboardData & {\n  onSelect: (command: string) => void;\n  onCancel: () => void;\n};\n\nconst Dashboard: React.FC<DashboardProps> = ({\n  skillCount,\n  agentCount,\n  source,\n  mode,\n  onSelect,\n  onCancel,\n}) => {\n  const { exit } = useApp();\n  const [focusIndex, setFocusIndex] = useState(0);\n\n  useInput((_input, key) => {\n    if (key.escape) {\n      onCancel();\n      exit();\n      return;\n    }\n    if (key.return) {\n      onSelect(DASHBOARD_OPTIONS[focusIndex].command);\n      exit();\n      return;\n    }\n    if (key.leftArrow) {\n      setFocusIndex((i) => (i > 0 ? i - 1 : DASHBOARD_OPTIONS.length - 1));\n    }\n    if (key.rightArrow) {\n      setFocusIndex((i) => (i < DASHBOARD_OPTIONS.length - 1 ? i + 1 : 0));\n    }\n  });\n\n  return (\n    <Box flexDirection=\"column\">\n      <Text bold>{DEFAULT_BRANDING.NAME}</Text>\n      <Text> </Text>\n      <Text> Skills: {skillCount} installed</Text>\n      <Text> Agents: {agentCount} compiled</Text>\n      <Text> Mode: {mode === \"plugin\" ? \"Plugin\" : \"Local\"}</Text>\n      {source && <Text> Source: {source}</Text>}\n      <Text> </Text>\n      <Box>\n        <Text> </Text>\n        {DASHBOARD_OPTIONS.map((option, index) => (\n          <Box key={option.command} marginRight={1}>\n            <Text\n              color={index === focusIndex ? CLI_COLORS.FOCUS : undefined}\n              bold={index === focusIndex}\n            >\n              [{option.label}]\n            </Text>\n          </Box>\n        ))}\n      </Box>\n      <Text dimColor> Use arrow keys to select, Enter to confirm, Esc to exit</Text>\n    </Box>\n  );\n};\n\ntype GlobalConfigChoice = \"edit-global\" | \"create-project\";\n\nconst GLOBAL_CONFIG_OPTIONS: { label: string; choice: GlobalConfigChoice }[] = [\n  { label: \"Edit global installation\", choice: \"edit-global\" },\n  { label: \"Create new project installation\", choice: \"create-project\" },\n];\n\ntype GlobalConfigPromptProps = {\n  globalConfigDir: string;\n  onSelect: (choice: GlobalConfigChoice) => void;\n  onCancel: () => void;\n};\n\nconst GlobalConfigPrompt: React.FC<GlobalConfigPromptProps> = ({\n  globalConfigDir,\n  onSelect,\n  onCancel,\n}) => {\n  const { exit } = useApp();\n  const [focusIndex, setFocusIndex] = useState(0);\n\n  useInput((_input, key) => {\n    if (key.escape) {\n      onCancel();\n      exit();\n      return;\n    }\n    if (key.return) {\n      onSelect(GLOBAL_CONFIG_OPTIONS[focusIndex].choice);\n      exit();\n      return;\n    }\n    if (key.leftArrow) {\n      setFocusIndex((i) => (i > 0 ? i - 1 : GLOBAL_CONFIG_OPTIONS.length - 1));\n    }\n    if (key.rightArrow) {\n      setFocusIndex((i) => (i < GLOBAL_CONFIG_OPTIONS.length - 1 ? i + 1 : 0));\n    }\n  });\n\n  return (\n    <Box flexDirection=\"column\">\n      <Text>A global installation was found at {globalConfigDir}</Text>\n      <Text>What would you like to do?</Text>\n      <Text> </Text>\n      <Box>\n        <Text> </Text>\n        {GLOBAL_CONFIG_OPTIONS.map((option, index) => (\n          <Box key={option.choice} marginRight={1}>\n            <Text\n              color={index === focusIndex ? CLI_COLORS.FOCUS : undefined}\n              bold={index === focusIndex}\n            >\n              [{option.label}]\n            </Text>\n          </Box>\n        ))}\n      </Box>\n      <Text dimColor> Use arrow keys to select, Enter to confirm, Esc to exit</Text>\n    </Box>\n  );\n};\n\nexport type DashboardData = {\n  skillCount: number;\n  agentCount: number;\n  mode: string;\n  source?: string;\n};\n\n/** Gathers dashboard data from the installation and project config. */\nexport async function getDashboardData(projectDir: string): Promise<DashboardData> {\n  const [info, loaded] = await Promise.all([getInstallationInfo(), loadProjectConfig(projectDir)]);\n\n  // Skill count from config (canonical source of truth for installed skills)\n  const skillCount = loaded?.config?.skills?.length ?? 0;\n  // Agent count from filesystem (compiled .md files in agents dir)\n  const agentCount = info?.agentCount ?? 0;\n  const mode =\n    info?.mode ?? (loaded?.config?.skills ? deriveInstallMode(loaded.config.skills) : \"local\");\n  const source = loaded?.config?.source;\n\n  return { skillCount, agentCount, mode, source };\n}\n\n/** Formats the dashboard summary as plain text lines (for non-interactive/test output). */\nexport function formatDashboardText(data: DashboardData): string {\n  const modeLabel = data.mode === \"plugin\" ? \"Plugin\" : \"Local\";\n  const lines = [\n    DEFAULT_BRANDING.NAME,\n    \"\",\n    `  Skills:  ${data.skillCount} installed`,\n    `  Agents:  ${data.agentCount} compiled`,\n    `  Mode:    ${modeLabel}`,\n  ];\n  if (data.source) {\n    lines.push(`  Source:  ${data.source}`);\n  }\n  lines.push(\"\");\n  lines.push(`  [Edit]  [Compile]  [Doctor]  [List]`);\n  return lines.join(\"\\n\");\n}\n\n/**\n * Shows the project dashboard and returns the selected command (or null if cancelled).\n * In non-interactive environments (no TTY), prints the summary text and returns null.\n */\nexport async function showDashboard(\n  projectDir: string,\n  log?: (message: string) => void,\n): Promise<string | null> {\n  const data = await getDashboardData(projectDir);\n\n  // Non-interactive: print text summary and exit (CI, piped, tests)\n  if (!process.stdin.isTTY) {\n    const output = log ?? console.log;\n    output(formatDashboardText(data));\n    return null;\n  }\n\n  let selectedCommand: string | null = null;\n\n  const { waitUntilExit } = render(\n    <Dashboard\n      skillCount={data.skillCount}\n      agentCount={data.agentCount}\n      source={data.source}\n      mode={data.mode}\n      onSelect={(command) => {\n        selectedCommand = command;\n      }}\n      onCancel={() => {\n        selectedCommand = null;\n      }}\n    />,\n  );\n\n  await waitUntilExit();\n\n  return selectedCommand;\n}\n\nexport default class Init extends BaseCommand {\n  static summary = `Initialize ${DEFAULT_BRANDING.NAME} in this project`;\n  static description =\n    \"Interactive wizard to set up skills and agents. Supports Plugin Mode (native install) and Local Mode (copy to .claude/).\";\n\n  static examples = [\n    {\n      description: \"Start the setup wizard\",\n      command: \"<%= config.bin %> <%= command.id %>\",\n    },\n    {\n      description: \"Initialize from a custom marketplace\",\n      command: \"<%= config.bin %> <%= command.id %> --source github:org/marketplace\",\n    },\n    {\n      description: \"Force refresh skills from remote\",\n      command: \"<%= config.bin %> <%= command.id %> --refresh\",\n    },\n  ];\n\n  static flags = {\n    ...BaseCommand.baseFlags,\n    refresh: Flags.boolean({\n      description: \"Force refresh from remote source\",\n      default: false,\n    }),\n  };\n\n  async run(): Promise<void> {\n    const { flags } = await this.parse(Init);\n    const projectDir = process.cwd();\n\n    // For \"already initialized\" check, only look at the target directory (no global fallback)\n    const individualPluginsExist = await hasIndividualPlugins(projectDir);\n    const existingInstallation = await detectProjectInstallation(projectDir);\n\n    if (individualPluginsExist || existingInstallation) {\n      const selectedCommand = await showDashboard(projectDir, (msg) => this.log(msg));\n      if (selectedCommand) {\n        await this.config.runCommand(selectedCommand);\n      }\n      return;\n    }\n\n    // No project config exists: check if a global installation exists\n    const globalInstallation = await detectGlobalInstallation();\n    if (globalInstallation) {\n      const globalConfigDir = path.join(os.homedir(), CLAUDE_SRC_DIR);\n\n      // Non-interactive: skip prompt and fall through to wizard\n      if (process.stdin.isTTY) {\n        let globalChoice: GlobalConfigChoice | null = null;\n\n        const { waitUntilExit: waitForPrompt } = render(\n          <GlobalConfigPrompt\n            globalConfigDir={globalConfigDir}\n            onSelect={(choice) => {\n              globalChoice = choice;\n            }}\n            onCancel={() => {\n              globalChoice = null;\n            }}\n          />,\n        );\n\n        await waitForPrompt();\n\n        if (globalChoice === \"edit-global\") {\n          const selectedCommand = await showDashboard(os.homedir(), (msg) => this.log(msg));\n          if (selectedCommand) {\n            await this.config.runCommand(selectedCommand);\n          }\n          return;\n        }\n\n        // User cancelled (Esc)\n        if (globalChoice === null) {\n          return;\n        }\n\n        // \"create-project\" falls through to wizard below\n      }\n    }\n\n    // Auto-create blank global config on first init from a project directory.\n    // This ensures the project config can always import from global.\n    if (projectDir !== GLOBAL_INSTALL_ROOT) {\n      const created = await ensureBlankGlobalConfig();\n      if (created) {\n        this.log(\"Created blank global config at ~/\" + CLAUDE_SRC_DIR);\n      }\n    }\n\n    enableBuffering();\n\n    let sourceResult: SourceLoadResult;\n    let startupMessages: StartupMessage[] = [];\n    try {\n      sourceResult = await loadSkillsMatrixFromSource({\n        sourceFlag: flags.source,\n        projectDir,\n        forceRefresh: flags.refresh,\n      });\n    } catch (error) {\n      disableBuffering();\n      this.error(getErrorMessage(error), {\n        exit: EXIT_CODES.ERROR,\n      });\n    }\n\n    startupMessages = drainBuffer();\n    disableBuffering();\n\n    let wizardResult: WizardResultV2 | null = null;\n\n    const marketplaceLabel = getMarketplaceLabel(sourceResult);\n    useMatrixStore.getState().setMatrix(sourceResult.matrix);\n    const { waitUntilExit } = render(\n      <Wizard\n        version={this.config.version}\n        marketplaceLabel={marketplaceLabel}\n        logo={ASCII_LOGO}\n        projectDir={projectDir}\n        startupMessages={startupMessages}\n        onComplete={(result) => {\n          // Boundary cast: Ink render callback returns unknown result type\n          wizardResult = result as WizardResultV2;\n        }}\n        onCancel={() => {\n          this.log(\"Setup cancelled\");\n        }}\n      />,\n    );\n\n    await waitUntilExit();\n\n    // Boundary cast: re-narrow after Ink waitUntilExit()\n    const result = wizardResult as WizardResultV2 | null;\n    if (!result || result.cancelled) {\n      this.exit(EXIT_CODES.CANCELLED);\n    }\n\n    if (result.skills.length === 0) {\n      this.error(\"No skills selected\", { exit: EXIT_CODES.ERROR });\n    }\n\n    await this.handleInstallation(result, sourceResult, flags);\n  }\n\n  private async handleInstallation(\n    result: WizardResultV2,\n    sourceResult: SourceLoadResult,\n    flags: { source?: string; refresh: boolean },\n  ): Promise<void> {\n    const projectDir = process.cwd();\n    const installMode = deriveInstallMode(result.skills);\n\n    this.log(\"\\n\");\n    this.log(`Selected ${result.skills.length} skills`);\n    this.log(\n      `Install mode: ${installMode === \"plugin\" ? \"Plugin (native install)\" : \"Local (copy to .claude/skills/)\"}`,\n    );\n\n    if (installMode === \"plugin\") {\n      if (sourceResult.marketplace) {\n        await this.installIndividualPlugins(result, sourceResult, flags, projectDir);\n      } else {\n        this.warn(\"Plugin Mode requires a marketplace for individual skill installation.\");\n        this.log(`Falling back to Local Mode (copying to .claude/skills/)...`);\n        this.log(\"To use Plugin Mode, either select a stack or configure a marketplace source.\\n\");\n        await this.installLocalMode(result, sourceResult, flags, projectDir);\n      }\n      return;\n    }\n\n    await this.installLocalMode(result, sourceResult, flags, projectDir);\n  }\n\n  private async installIndividualPlugins(\n    result: WizardResultV2,\n    sourceResult: SourceLoadResult,\n    flags: { source?: string },\n    projectDir: string,\n  ): Promise<void> {\n    if (sourceResult.marketplace) {\n      const marketplaceExists = await claudePluginMarketplaceExists(sourceResult.marketplace);\n\n      if (!marketplaceExists) {\n        this.log(`Registering marketplace \"${sourceResult.marketplace}\"...`);\n        try {\n          const marketplaceSource = sourceResult.sourceConfig.source.replace(/^github:/, \"\");\n          await claudePluginMarketplaceAdd(marketplaceSource);\n          this.log(`Registered marketplace: ${sourceResult.marketplace}`);\n        } catch (error) {\n          this.error(getErrorMessage(error), {\n            exit: EXIT_CODES.ERROR,\n          });\n        }\n      }\n    }\n\n    this.log(\"Installing skill plugins...\");\n    for (const skill of result.skills.filter((s) => s.source !== \"local\")) {\n      const pluginRef = `${skill.id}@${sourceResult.marketplace}`;\n      const pluginScope = skill.scope === \"global\" ? \"user\" : \"project\";\n      try {\n        await claudePluginInstall(pluginRef, pluginScope, projectDir);\n        this.log(`  Installed ${pluginRef}`);\n      } catch (error) {\n        this.error(`Failed to install plugin ${pluginRef}: ${getErrorMessage(error)}`, {\n          exit: EXIT_CODES.ERROR,\n        });\n      }\n    }\n\n    const pluginSkillCount = result.skills.filter((s) => s.source !== \"local\").length;\n    this.log(`Installed ${pluginSkillCount} skill plugins\\n`);\n\n    this.log(\"Generating configuration...\");\n    try {\n      const configResult = await installPluginConfig({\n        wizardResult: result,\n        sourceResult,\n        projectDir,\n        sourceFlag: flags.source,\n      });\n\n      if (configResult.wasMerged) {\n        this.log(`Merged with existing config at ${configResult.mergedConfigPath}`);\n      }\n\n      this.log(`Configuration saved (${configResult.config.agents.length} agents)\\n`);\n      this.log(STATUS_MESSAGES.COMPILING_AGENTS);\n      this.log(`Compiled ${configResult.compiledAgents.length} agents to .claude/agents/\\n`);\n\n      this.log(`${SUCCESS_MESSAGES.INIT_SUCCESS}\\n`);\n      this.log(\"Agents compiled to:\");\n      this.log(`  ${configResult.agentsDir}`);\n      for (const agentName of configResult.compiledAgents) {\n        this.log(`    ${agentName}.md`);\n      }\n      this.log(\"\");\n      this.log(\"Configuration:\");\n      this.log(`  ${configResult.configPath}`);\n      this.log(\"\");\n      this.log(\"To customize agent-skill assignments:\");\n      this.log(`  1. Edit .claude-src/config.ts`);\n      this.log(`  2. Run '${CLI_BIN_NAME} compile' to regenerate agents`);\n      this.log(\"\");\n\n      const permissionWarning = await checkPermissions(projectDir);\n      if (permissionWarning) {\n        const { waitUntilExit } = render(permissionWarning);\n        await waitUntilExit();\n      }\n    } catch (error) {\n      this.handleError(error);\n    }\n  }\n\n  private async installLocalMode(\n    result: WizardResultV2,\n    sourceResult: SourceLoadResult,\n    flags: { source?: string },\n    projectDir: string,\n  ): Promise<void> {\n    this.log(\"Copying skills to local directory...\");\n    try {\n      const installResult = await installLocal({\n        wizardResult: result,\n        sourceResult,\n        projectDir,\n        sourceFlag: flags.source,\n      });\n\n      this.log(`Copied ${installResult.copiedSkills.length} skills to .claude/skills/\\n`);\n      this.log(\"Generating configuration...\");\n\n      if (installResult.wasMerged) {\n        this.log(`Merged with existing config at ${installResult.mergedConfigPath}`);\n      }\n\n      this.log(`Configuration saved (${installResult.config.agents.length} agents)\\n`);\n      this.log(STATUS_MESSAGES.COMPILING_AGENTS);\n      this.log(`Compiled ${installResult.compiledAgents.length} agents to .claude/agents/\\n`);\n\n      this.log(`${SUCCESS_MESSAGES.INIT_SUCCESS}\\n`);\n      this.log(\"Skills copied to:\");\n      this.log(`  ${installResult.skillsDir}`);\n      for (const copiedSkill of installResult.copiedSkills) {\n        const displayName = getSkill(copiedSkill.skillId).displayName;\n        this.log(`    ${displayName}/`);\n      }\n      this.log(\"\");\n      this.log(\"Agents compiled to:\");\n      this.log(`  ${installResult.agentsDir}`);\n      for (const agentName of installResult.compiledAgents) {\n        this.log(`    ${agentName}.md`);\n      }\n      this.log(\"\");\n      this.log(\"Configuration:\");\n      this.log(`  ${installResult.configPath}`);\n      this.log(\"\");\n      this.log(\"To customize agent-skill assignments:\");\n      this.log(`  1. Edit .claude-src/config.ts`);\n      this.log(`  2. Run '${CLI_BIN_NAME} compile' to regenerate agents`);\n      this.log(\"\");\n\n      const permissionWarning = await checkPermissions(projectDir);\n      if (permissionWarning) {\n        const { waitUntilExit } = render(permissionWarning);\n        await waitUntilExit();\n      }\n    } catch (error) {\n      this.handleError(error);\n    }\n  }\n}\n","import React from \"react\";\n\nimport { Text, Box } from \"ink\";\nimport path from \"path\";\n\nimport { CLAUDE_DIR, CLI_COLORS, MAX_CONFIG_FILE_SIZE } from \"../consts\";\nimport { fileExists, readFileSafe } from \"../utils/fs\";\nimport { warn } from \"../utils/logger\";\nimport { settingsFileSchema, warnUnknownFields } from \"./schemas\";\n\ntype PermissionConfig = {\n  allow?: string[];\n  deny?: string[];\n};\n\ntype SettingsFile = {\n  permissions?: PermissionConfig;\n};\n\nexport async function checkPermissions(projectRoot: string): Promise<React.ReactElement | null> {\n  const settingsPath = path.join(projectRoot, CLAUDE_DIR, \"settings.json\");\n  const localSettingsPath = path.join(projectRoot, CLAUDE_DIR, \"settings.local.json\");\n\n  let permissions: PermissionConfig | undefined;\n\n  for (const filePath of [localSettingsPath, settingsPath]) {\n    if (await fileExists(filePath)) {\n      try {\n        const content = await readFileSafe(filePath, MAX_CONFIG_FILE_SIZE);\n        const raw = JSON.parse(content);\n        if (typeof raw === \"object\" && raw !== null && !Array.isArray(raw)) {\n          // Known Claude CLI settings.json fields (permissions is ours; the rest are managed by Claude CLI)\n          const EXPECTED_SETTINGS_KEYS = [\n            \"permissions\",\n            \"enabledPlugins\",\n            \"env\",\n            \"allowedTools\",\n            \"customInstructions\",\n            \"defaultModel\",\n          ] as const;\n          warnUnknownFields(\n            raw as Record<string, unknown>,\n            EXPECTED_SETTINGS_KEYS,\n            `settings file '${filePath}'`,\n          );\n        }\n        const result = settingsFileSchema.safeParse(raw);\n        const parsed: SettingsFile = result.success ? (result.data as SettingsFile) : {};\n        if (parsed.permissions) {\n          permissions = parsed.permissions;\n          break;\n        }\n      } catch {\n        warn(`Malformed settings file at '${filePath}' — skipping`);\n      }\n    }\n  }\n\n  if (!permissions) {\n    return (\n      <Box flexDirection=\"column\" borderStyle=\"round\" borderColor={CLI_COLORS.WARNING} padding={1}>\n        <Text bold color={CLI_COLORS.WARNING}>\n          Permission Notice\n        </Text>\n        <Text>No permissions configured in .claude/settings.json</Text>\n        <Text>Agents will prompt for approval on each tool use.</Text>\n        <Text> </Text>\n        <Text>For autonomous operation, add to .claude/settings.json:</Text>\n        <Text> </Text>\n        <Text color=\"dim\">{\"{\"}</Text>\n        <Text color=\"dim\">{'  \"permissions\": {'}</Text>\n        <Text color=\"dim\">{'    \"allow\": ['}</Text>\n        <Text color=\"dim\">{'      \"Read(*)\",'}</Text>\n        <Text color=\"dim\">{'      \"Bash(git *)\",'}</Text>\n        <Text color=\"dim\">{'      \"Bash(bun *)\"'}</Text>\n        <Text color=\"dim\">{\"    ]\"}</Text>\n        <Text color=\"dim\">{\"  }\"}</Text>\n        <Text color=\"dim\">{\"}\"}</Text>\n      </Box>\n    );\n  }\n\n  const hasRestrictiveBash = permissions.deny?.some(\n    (rule) => rule === \"Bash(*)\" || rule === \"Bash\",\n  );\n  const hasNoAllows = !permissions.allow || permissions.allow.length === 0;\n\n  if (hasRestrictiveBash || hasNoAllows) {\n    return (\n      <Box flexDirection=\"column\" borderStyle=\"round\" borderColor={CLI_COLORS.WARNING} padding={1}>\n        <Text bold color={CLI_COLORS.WARNING}>\n          Permission Warnings\n        </Text>\n        {hasRestrictiveBash && (\n          <Text>\n            ⚠ Bash is denied in permissions. Some agents require Bash for git, testing, and build\n            commands.\n          </Text>\n        )}\n        {hasNoAllows && (\n          <Text>⚠ No allow rules configured. Agents will prompt for each tool use.</Text>\n        )}\n      </Box>\n    );\n  }\n\n  return 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