@agentic-qe/v3 3.0.0-alpha.5 → 3.0.0-alpha.7

package/src/init/init-wizard.ts

@@ -1,1061 +0,0 @@
-/**
- * Init Wizard
- * ADR-025: Enhanced Init with Self-Configuration
- *
- * Interactive wizard for AQE initialization with visual feedback.
- */
-
-import { existsSync, mkdirSync, writeFileSync, readFileSync } from 'fs';
-import { join, dirname } from 'path';
-import type {
-  ProjectAnalysis,
-  AQEInitConfig,
-  InitResult,
-  InitStepResult,
-  WizardStep,
-  WizardState,
-  PretrainedLibrary,
-} from './types.js';
-import { createDefaultConfig, DEFAULT_SKILLS_CONFIG } from './types.js';
-import { ProjectAnalyzer, createProjectAnalyzer } from './project-analyzer.js';
-import { SelfConfigurator, createSelfConfigurator } from './self-configurator.js';
-import { SkillsInstaller, createSkillsInstaller, type SkillsInstallResult } from './skills-installer.js';
-import { AgentsInstaller, createAgentsInstaller, type AgentsInstallResult } from './agents-installer.js';
-
-// ============================================================================
-// Internal Types
-// ============================================================================
-
-/**
- * Worker registration entry for daemon registry
- */
-interface WorkerRegistration {
-  name: string;
-  enabled: boolean;
-  interval: number;
-  lastRun: string | null;
-  status: 'pending' | 'running' | 'completed' | 'error';
-}
-
-// ============================================================================
-// Wizard Step Definitions
-// ============================================================================
-
-const WIZARD_STEPS: WizardStep[] = [
-  {
-    id: 'welcome',
-    title: 'Welcome to AQE v3',
-    description: 'This wizard will configure Agentic QE for your project.',
-    type: 'info',
-  },
-  {
-    id: 'project-type',
-    title: 'Project Type',
-    description: 'What type of project is this?',
-    type: 'choice',
-    options: [
-      { value: 'auto', label: 'Auto-detect', description: 'Let AQE analyze your project', recommended: true },
-      { value: 'single', label: 'Single Package', description: 'Standard single-package project' },
-      { value: 'monorepo', label: 'Monorepo', description: 'Multi-package workspace' },
-      { value: 'library', label: 'Library', description: 'Publishable package/library' },
-    ],
-    default: 'auto',
-  },
-  {
-    id: 'learning-mode',
-    title: 'Learning System',
-    description: 'How should AQE learn from your project?',
-    type: 'choice',
-    options: [
-      { value: 'full', label: 'Full Learning', description: 'Transformer embeddings + SQLite persistence', recommended: true },
-      { value: 'basic', label: 'Basic Learning', description: 'Hash-based embeddings, in-memory' },
-      { value: 'disabled', label: 'Disabled', description: 'No pattern learning' },
-    ],
-    default: 'full',
-  },
-  {
-    id: 'load-patterns',
-    title: 'Pre-trained Patterns',
-    description: 'Load pre-trained QE patterns for faster results?',
-    type: 'confirm',
-    default: true,
-  },
-  {
-    id: 'hooks',
-    title: 'Claude Code Integration',
-    description: 'Enable Claude Code hooks for seamless integration?',
-    type: 'confirm',
-    default: true,
-  },
-  {
-    id: 'workers',
-    title: 'Background Workers',
-    description: 'Start background workers for continuous monitoring?',
-    type: 'confirm',
-    default: true,
-  },
-  {
-    id: 'skills',
-    title: 'Install Skills',
-    description: 'Install AQE skills (v2 methodology + v3 domain skills)?',
-    type: 'confirm',
-    default: true,
-  },
-  {
-    id: 'agents',
-    title: 'Install Agents',
-    description: 'Install V3 QE agents for Claude Code Task tool?',
-    type: 'confirm',
-    default: true,
-  },
-];
-
-// ============================================================================
-// Init Orchestrator
-// ============================================================================
-
-export interface InitOrchestratorOptions {
-  /** Project root directory */
-  projectRoot: string;
-  /** Skip wizard and use auto-configuration */
-  autoMode?: boolean;
-  /** Skip pattern loading */
-  skipPatterns?: boolean;
-  /** Minimal configuration */
-  minimal?: boolean;
-  /** Pre-trained patterns library */
-  pretrainedLibrary?: PretrainedLibrary;
-  /** Custom wizard answers */
-  wizardAnswers?: Record<string, unknown>;
-}
-
-export class InitOrchestrator {
-  private projectRoot: string;
-  private options: InitOrchestratorOptions;
-  private analyzer: ProjectAnalyzer;
-  private configurator: SelfConfigurator;
-  private steps: InitStepResult[] = [];
-
-  constructor(options: InitOrchestratorOptions) {
-    this.options = options;
-    this.projectRoot = options.projectRoot;
-    this.analyzer = createProjectAnalyzer(options.projectRoot);
-    this.configurator = createSelfConfigurator({ minimal: options.minimal });
-  }
-
-  /**
-   * Run the full initialization process
-   */
-  async initialize(): Promise<InitResult> {
-    const startTime = Date.now();
-
-    try {
-      // Step 1: Analyze project
-      const analysis = await this.runStep('Project Analysis', async () => {
-        return await this.analyzer.analyze();
-      });
-
-      // Step 2: Generate configuration
-      const config = await this.runStep('Configuration Generation', async () => {
-        if (this.options.autoMode) {
-          return this.configurator.recommend(analysis);
-        }
-        return this.applyWizardAnswers(analysis);
-      });
-
-      // Step 3: Initialize learning system
-      const patternsLoaded = await this.runStep('Learning System Setup', async () => {
-        if (config.learning.enabled && !this.options.skipPatterns) {
-          return await this.initializeLearningSystem(config);
-        }
-        return 0;
-      });
-
-      // Step 4: Configure hooks
-      const hooksConfigured = await this.runStep('Hooks Configuration', async () => {
-        if (config.hooks.claudeCode) {
-          return await this.configureHooks(config);
-        }
-        return false;
-      });
-
-      // Step 5: Configure MCP server
-      const mcpConfigured = await this.runStep('MCP Configuration', async () => {
-        return await this.configureMCP();
-      });
-
-      // Step 6: Generate CLAUDE.md
-      const claudeMdGenerated = await this.runStep('CLAUDE.md Generation', async () => {
-        return await this.generateCLAUDEmd(config);
-      });
-
-      // Step 7: Start workers
-      const workersStarted = await this.runStep('Background Workers', async () => {
-        if (config.workers.daemonAutoStart) {
-          return await this.startWorkers(config);
-        }
-        return 0;
-      });
-
-      // Step 8: Install skills
-      const skillsInstalled = await this.runStep('Skills Installation', async () => {
-        if (config.skills.install) {
-          return await this.installSkills(config);
-        }
-        return 0;
-      });
-
-      // Step 9: Install agents
-      const agentsInstalled = await this.runStep('Agents Installation', async () => {
-        return await this.installAgents();
-      });
-
-      // Step 10: Write configuration file
-      await this.runStep('Save Configuration', async () => {
-        return await this.saveConfig(config);
-      });
-
-      return {
-        success: true,
-        config,
-        steps: this.steps,
-        summary: {
-          projectAnalyzed: true,
-          configGenerated: true,
-          patternsLoaded,
-          skillsInstalled,
-          agentsInstalled,
-          hooksConfigured,
-          mcpConfigured,
-          claudeMdGenerated,
-          workersStarted,
-        },
-        totalDurationMs: Date.now() - startTime,
-        timestamp: new Date(),
-      };
-    } catch (error) {
-      // Add error step
-      this.steps.push({
-        step: 'Initialization Failed',
-        status: 'error',
-        message: error instanceof Error ? error.message : String(error),
-        durationMs: 0,
-      });
-
-      return {
-        success: false,
-        config: createDefaultConfig('unknown', this.projectRoot),
-        steps: this.steps,
-        summary: {
-          projectAnalyzed: false,
-          configGenerated: false,
-          patternsLoaded: 0,
-          skillsInstalled: 0,
-          agentsInstalled: 0,
-          hooksConfigured: false,
-          mcpConfigured: false,
-          claudeMdGenerated: false,
-          workersStarted: 0,
-        },
-        totalDurationMs: Date.now() - startTime,
-        timestamp: new Date(),
-      };
-    }
-  }
-
-  /**
-   * Get wizard steps
-   */
-  getWizardSteps(): WizardStep[] {
-    return WIZARD_STEPS;
-  }
-
-  /**
-   * Run a single initialization step with timing and status tracking
-   */
-  private async runStep<T>(
-    stepName: string,
-    action: () => Promise<T>
-  ): Promise<T> {
-    const startTime = Date.now();
-    try {
-      const result = await action();
-      this.steps.push({
-        step: stepName,
-        status: 'success',
-        message: `${stepName} completed successfully`,
-        durationMs: Date.now() - startTime,
-      });
-      return result;
-    } catch (error) {
-      this.steps.push({
-        step: stepName,
-        status: 'error',
-        message: error instanceof Error ? error.message : String(error),
-        durationMs: Date.now() - startTime,
-      });
-      throw error;
-    }
-  }
-
-  /**
-   * Apply wizard answers to generate config
-   */
-  private applyWizardAnswers(analysis: ProjectAnalysis): AQEInitConfig {
-    const answers = this.options.wizardAnswers || {};
-    const config = this.configurator.recommend(analysis);
-
-    // Apply project type override
-    if (answers['project-type'] && answers['project-type'] !== 'auto') {
-      config.project.type = answers['project-type'] as 'single' | 'monorepo' | 'library';
-    }
-
-    // Apply learning mode
-    switch (answers['learning-mode']) {
-      case 'full':
-        config.learning.enabled = true;
-        config.learning.embeddingModel = 'transformer';
-        break;
-      case 'basic':
-        config.learning.enabled = true;
-        config.learning.embeddingModel = 'hash';
-        break;
-      case 'disabled':
-        config.learning.enabled = false;
-        break;
-    }
-
-    // Apply pattern loading preference
-    if (answers['load-patterns'] === false) {
-      config.learning.pretrainedPatterns = false;
-    }
-
-    // Apply hooks preference
-    if (answers['hooks'] === false) {
-      config.hooks.claudeCode = false;
-    }
-
-    // Apply workers preference
-    if (answers['workers'] === false) {
-      config.workers.daemonAutoStart = false;
-    }
-
-    // Apply skills preference
-    if (answers['skills'] === false) {
-      config.skills.install = false;
-    }
-
-    return config;
-  }
-
-  /**
-   * Initialize the learning system
-   * Creates database, initializes HNSW index, loads pre-trained patterns
-   */
-  private async initializeLearningSystem(config: AQEInitConfig): Promise<number> {
-    if (!config.learning.enabled) {
-      return 0;
-    }
-
-    // Create data directory for learning system
-    const dataDir = join(this.projectRoot, '.agentic-qe', 'data');
-    if (!existsSync(dataDir)) {
-      mkdirSync(dataDir, { recursive: true });
-    }
-
-    // Create HNSW index directory
-    const hnswDir = join(dataDir, 'hnsw');
-    if (!existsSync(hnswDir)) {
-      mkdirSync(hnswDir, { recursive: true });
-    }
-
-    // Write learning system config for runtime use
-    const learningConfigPath = join(dataDir, 'learning-config.json');
-    const learningConfig = {
-      embeddingModel: config.learning.embeddingModel,
-      hnswConfig: config.learning.hnswConfig,
-      qualityThreshold: config.learning.qualityThreshold,
-      promotionThreshold: config.learning.promotionThreshold,
-      databasePath: join(dataDir, 'qe-patterns.db'),
-      hnswIndexPath: join(hnswDir, 'index.bin'),
-      initialized: new Date().toISOString(),
-    };
-    writeFileSync(learningConfigPath, JSON.stringify(learningConfig, null, 2), 'utf-8');
-
-    // Load pre-trained patterns if available
-    let patternsLoaded = 0;
-
-    if (config.learning.pretrainedPatterns && this.options.pretrainedLibrary) {
-      const library = this.options.pretrainedLibrary;
-
-      // Group patterns by domain for organization
-      const patternsByDomain = new Map<string, typeof library.patterns>();
-      for (const pattern of library.patterns) {
-        const domain = pattern.domain || 'general';
-        if (!patternsByDomain.has(domain)) {
-          patternsByDomain.set(domain, []);
-        }
-        patternsByDomain.get(domain)!.push(pattern);
-      }
-
-      // Write patterns index for lazy loading
-      const patternsIndexPath = join(dataDir, 'pretrained-index.json');
-      const patternsIndex = {
-        version: library.version,
-        totalPatterns: library.statistics.totalPatterns,
-        domains: Array.from(patternsByDomain.entries()).map(([domain, patterns]) => ({
-          name: domain,
-          patternCount: patterns.length,
-        })),
-        loadedAt: new Date().toISOString(),
-      };
-      writeFileSync(patternsIndexPath, JSON.stringify(patternsIndex, null, 2), 'utf-8');
-
-      // Write actual patterns for each domain
-      for (const [domain, patterns] of patternsByDomain) {
-        const domainDir = join(dataDir, 'patterns', domain);
-        if (!existsSync(domainDir)) {
-          mkdirSync(domainDir, { recursive: true });
-        }
-
-        // Write patterns file
-        const patternsPath = join(domainDir, 'patterns.json');
-        writeFileSync(patternsPath, JSON.stringify(patterns, null, 2), 'utf-8');
-        patternsLoaded += patterns.length;
-      }
-
-      return patternsLoaded;
-    }
-
-    // Even without pre-trained patterns, we've initialized the learning system structure
-    return 0;
-  }
-
-  /**
-   * Configure Claude Code hooks
-   * Creates or updates .claude/settings.json with AQE hooks
-   */
-  private async configureHooks(config: AQEInitConfig): Promise<boolean> {
-    if (!config.hooks.claudeCode) {
-      return false;
-    }
-
-    // Create .claude directory
-    const claudeDir = join(this.projectRoot, '.claude');
-    if (!existsSync(claudeDir)) {
-      mkdirSync(claudeDir, { recursive: true });
-    }
-
-    // Load existing settings or create new
-    const settingsPath = join(claudeDir, 'settings.json');
-    let settings: Record<string, unknown> = {};
-
-    if (existsSync(settingsPath)) {
-      try {
-        const content = readFileSync(settingsPath, 'utf-8');
-        settings = JSON.parse(content);
-      } catch {
-        // If parse fails, start fresh
-        settings = {};
-      }
-    }
-
-    // Configure hooks based on config
-    const hooks: Record<string, unknown> = {
-      // Pre-tool hooks for learning
-      PreToolUse: [
-        {
-          matcher: 'Edit|Write|MultiEdit',
-          hooks: [
-            {
-              type: 'command',
-              command: `npx @claude-flow/cli@latest hooks pre-edit --file "$AQE_FILE"`,
-            },
-          ],
-        },
-        {
-          matcher: 'Bash',
-          hooks: [
-            {
-              type: 'command',
-              command: `npx @claude-flow/cli@latest hooks pre-command --command "$AQE_COMMAND"`,
-            },
-          ],
-        },
-      ],
-
-      // Post-tool hooks for learning
-      PostToolUse: [
-        {
-          matcher: 'Edit|Write|MultiEdit',
-          hooks: [
-            {
-              type: 'command',
-              command: `npx @claude-flow/cli@latest hooks post-edit --file "$AQE_FILE" --success "$AQE_SUCCESS"`,
-            },
-          ],
-        },
-        {
-          matcher: 'Bash',
-          hooks: [
-            {
-              type: 'command',
-              command: `npx @claude-flow/cli@latest hooks post-command --command "$AQE_COMMAND" --exit-code "$AQE_EXIT_CODE"`,
-            },
-          ],
-        },
-      ],
-
-      // Session hooks
-      SessionStart: [
-        {
-          type: 'command',
-          command: `npx @claude-flow/cli@latest hooks session-start`,
-        },
-      ],
-
-      SessionEnd: [
-        {
-          type: 'command',
-          command: `npx @claude-flow/cli@latest hooks session-end --save-state`,
-        },
-      ],
-    };
-
-    // Merge with existing settings
-    settings.hooks = {
-      ...(settings.hooks as Record<string, unknown> || {}),
-      ...hooks,
-    };
-
-    // Add AQE metadata
-    settings.aqe = {
-      version: config.version,
-      initialized: new Date().toISOString(),
-      hooksConfigured: true,
-    };
-
-    // Write settings
-    writeFileSync(settingsPath, JSON.stringify(settings, null, 2), 'utf-8');
-
-    return true;
-  }
-
-  /**
-   * Configure MCP server
-   * Creates .claude/mcp.json with AQE v3 MCP server configuration
-   */
-  private async configureMCP(): Promise<boolean> {
-    // Create .claude directory if it doesn't exist
-    const claudeDir = join(this.projectRoot, '.claude');
-    if (!existsSync(claudeDir)) {
-      mkdirSync(claudeDir, { recursive: true });
-    }
-
-    // Load existing MCP config or create new
-    const mcpPath = join(claudeDir, 'mcp.json');
-    let mcpConfig: Record<string, unknown> = {};
-
-    if (existsSync(mcpPath)) {
-      try {
-        const content = readFileSync(mcpPath, 'utf-8');
-        mcpConfig = JSON.parse(content);
-      } catch {
-        mcpConfig = {};
-      }
-    }
-
-    // Ensure mcpServers object exists
-    if (!mcpConfig.mcpServers) {
-      mcpConfig.mcpServers = {};
-    }
-
-    // Add AQE v3 MCP server configuration
-    const servers = mcpConfig.mcpServers as Record<string, unknown>;
-    servers['agentic-qe-v3'] = {
-      command: 'npx',
-      args: ['@agentic-qe/v3', 'mcp'],
-      env: {
-        AQE_PROJECT_ROOT: this.projectRoot,
-        NODE_ENV: 'production',
-      },
-    };
-
-    // Write MCP config
-    writeFileSync(mcpPath, JSON.stringify(mcpConfig, null, 2), 'utf-8');
-
-    return true;
-  }
-
-  /**
-   * Generate CLAUDE.md for the project
-   * Creates a comprehensive guide for Claude Code with V3-specific instructions
-   * If CLAUDE.md exists, creates backup and appends AQE v3 section
-   */
-  private async generateCLAUDEmd(config: AQEInitConfig): Promise<boolean> {
-    const claudeMdPath = join(this.projectRoot, 'CLAUDE.md');
-
-    // Generate CLAUDE.md content with V3-specific instructions
-    const content = this.generateCLAUDEmdContent(config);
-
-    // Check if CLAUDE.md already exists
-    if (existsSync(claudeMdPath)) {
-      const existing = readFileSync(claudeMdPath, 'utf-8');
-
-      // Check if AQE section already exists
-      if (existing.includes('## Agentic QE v3')) {
-        // Already has AQE section, don't duplicate
-        return true;
-      }
-
-      // Create backup before modifying
-      const backupPath = join(this.projectRoot, 'CLAUDE.md.backup');
-      writeFileSync(backupPath, existing, 'utf-8');
-
-      // Append AQE section to existing CLAUDE.md
-      writeFileSync(claudeMdPath, existing + '\n\n' + content, 'utf-8');
-    } else {
-      // Create new CLAUDE.md
-      writeFileSync(claudeMdPath, content, 'utf-8');
-    }
-
-    return true;
-  }
-
-  /**
-   * Generate CLAUDE.md content
-   */
-  private generateCLAUDEmdContent(config: AQEInitConfig): string {
-    const enabledDomains = config.domains.enabled.slice(0, 6).join(', ');
-    const moreDomainsCount = Math.max(0, config.domains.enabled.length - 6);
-
-    return `## Agentic QE v3
-
-This project uses **Agentic QE v3** - a Domain-Driven Quality Engineering platform with 12 bounded contexts, ReasoningBank learning, and HNSW vector search.
-
-### Quick Reference
-
-\`\`\`bash
-# Run tests
-npm test -- --run
-
-# Check quality
-npx @agentic-qe/v3 quality assess
-
-# Generate tests
-npx @agentic-qe/v3 test generate <file>
-
-# Coverage analysis
-npx @agentic-qe/v3 coverage <path>
-\`\`\`
-
-### MCP Server
-
-The AQE v3 MCP server is configured in \`.claude/mcp.json\`. Available tools:
-
-| Tool | Description |
-|------|-------------|
-| \`fleet_init\` | Initialize QE fleet |
-| \`task_submit\` | Submit QE tasks |
-| \`test_generate_enhanced\` | AI-powered test generation |
-| \`coverage_analyze_sublinear\` | O(log n) coverage analysis |
-| \`quality_assess\` | Quality gate evaluation |
-| \`security_scan_comprehensive\` | SAST/DAST scanning |
-
-### 12 DDD Bounded Contexts
-
-| Domain | Purpose |
-|--------|---------|
-| test-generation | AI-powered test creation |
-| test-execution | Parallel execution with retry |
-| coverage-analysis | Sublinear gap detection |
-| quality-assessment | Quality gates |
-| defect-intelligence | Defect prediction |
-| requirements-validation | BDD scenarios |
-| code-intelligence | Knowledge graph |
-| security-compliance | SAST/DAST |
-| contract-testing | API contracts |
-| visual-accessibility | Visual regression |
-| chaos-resilience | Chaos engineering |
-| learning-optimization | Cross-domain learning |
-
-### Configuration
-
-- **Enabled Domains**: ${enabledDomains}${moreDomainsCount > 0 ? ` (+${moreDomainsCount} more)` : ''}
-- **Learning**: ${config.learning.enabled ? 'Enabled' : 'Disabled'} (${config.learning.embeddingModel} embeddings)
-- **Max Concurrent Agents**: ${config.agents.maxConcurrent}
-- **Background Workers**: ${config.workers.enabled.length > 0 ? config.workers.enabled.join(', ') : 'None'}
-
-### V3 QE Agents
-
-V3 QE agents are installed in \`.claude/agents/v3/\`. Use with Claude Code's Task tool:
-
-\`\`\`
-# Example: Generate tests
-Task("Generate unit tests", "v3-qe-test-generator")
-
-# Example: Analyze coverage
-Task("Find coverage gaps", "v3-qe-coverage-specialist")
-\`\`\`
-
-### Data Storage
-
-- **Memory Backend**: \`.agentic-qe/data/memory.db\` (SQLite)
-- **Pattern Storage**: \`.agentic-qe/data/qe-patterns.db\` (ReasoningBank)
-- **HNSW Index**: \`.agentic-qe/data/hnsw/index.bin\`
-- **Configuration**: \`.agentic-qe/config.yaml\`
-
-### Best Practices
-
-1. **Test Execution**: Always use \`npm test -- --run\` (not \`npm test\` which runs in watch mode)
-2. **Coverage Targets**: Aim for 80%+ coverage on critical paths
-3. **Quality Gates**: Run \`quality_assess\` before merging PRs
-4. **Pattern Learning**: AQE learns from successful test patterns - consistent naming helps
-
-### Troubleshooting
-
-If MCP tools aren't working:
-\`\`\`bash
-# Verify MCP server
-npx @agentic-qe/v3 mcp --help
-
-# Check configuration
-cat .claude/mcp.json
-
-# Reinitialize if needed
-npx @agentic-qe/v3 init --auto
-\`\`\`
-
----
-*Generated by AQE v3 init - ${new Date().toISOString()}*
-`;
-  }
-
-  /**
-   * Start background workers
-   * Writes worker configuration for daemon and optionally starts workers
-   */
-  private async startWorkers(config: AQEInitConfig): Promise<number> {
-    if (!config.workers.daemonAutoStart || config.workers.enabled.length === 0) {
-      return 0;
-    }
-
-    // Create workers directory
-    const workersDir = join(this.projectRoot, '.agentic-qe', 'workers');
-    if (!existsSync(workersDir)) {
-      mkdirSync(workersDir, { recursive: true });
-    }
-
-    // Write worker registry for daemon to load
-    const workerRegistry: Record<string, WorkerRegistration> = {};
-
-    // Default intervals for workers (in milliseconds)
-    const defaultIntervals: Record<string, number> = {
-      'pattern-consolidator': 60000, // 1 minute
-      'coverage-gap-scanner': 300000, // 5 minutes
-      'flaky-test-detector': 600000, // 10 minutes
-      'routing-accuracy-monitor': 120000, // 2 minutes
-    };
-
-    for (const workerName of config.workers.enabled) {
-      workerRegistry[workerName] = {
-        name: workerName,
-        enabled: true,
-        interval: config.workers.intervals[workerName] || defaultIntervals[workerName] || 60000,
-        lastRun: null,
-        status: 'pending',
-      };
-    }
-
-    // Write registry file
-    const registryPath = join(workersDir, 'registry.json');
-    const registryData = {
-      version: config.version,
-      maxConcurrent: config.workers.maxConcurrent,
-      workers: workerRegistry,
-      createdAt: new Date().toISOString(),
-      daemonPid: null, // Will be set when daemon starts
-    };
-    writeFileSync(registryPath, JSON.stringify(registryData, null, 2), 'utf-8');
-
-    // Write individual worker configs
-    for (const workerName of config.workers.enabled) {
-      const workerConfigPath = join(workersDir, `${workerName}.json`);
-      const workerConfig = {
-        name: workerName,
-        enabled: true,
-        interval: config.workers.intervals[workerName] || defaultIntervals[workerName] || 60000,
-        projectRoot: this.projectRoot,
-        dataDir: join(this.projectRoot, '.agentic-qe', 'data'),
-        createdAt: new Date().toISOString(),
-      };
-      writeFileSync(workerConfigPath, JSON.stringify(workerConfig, null, 2), 'utf-8');
-    }
-
-    // Write daemon startup script
-    const daemonScriptPath = join(workersDir, 'start-daemon.sh');
-    const daemonScript = `#!/bin/bash
-# AQE v3 Worker Daemon Startup Script
-# Generated by aqe init
-
-PROJECT_ROOT="${this.projectRoot}"
-WORKERS_DIR="$PROJECT_ROOT/.agentic-qe/workers"
-PID_FILE="$WORKERS_DIR/daemon.pid"
-
-# Check if already running
-if [ -f "$PID_FILE" ]; then
-  PID=$(cat "$PID_FILE")
-  if kill -0 "$PID" 2>/dev/null; then
-    echo "Daemon already running (PID: $PID)"
-    exit 0
-  fi
-fi
-
-# Start daemon
-npx @claude-flow/cli@latest daemon start --project "$PROJECT_ROOT" &
-echo $! > "$PID_FILE"
-echo "Daemon started (PID: $!)"
-`;
-    writeFileSync(daemonScriptPath, daemonScript, { mode: 0o755 });
-
-    return config.workers.enabled.length;
-  }
-
-  /**
-   * Install AQE skills
-   * Copies v2 methodology and v3 domain skills to the project
-   */
-  private async installSkills(config: AQEInitConfig): Promise<number> {
-    if (!config.skills.install) {
-      return 0;
-    }
-
-    const installer = createSkillsInstaller({
-      projectRoot: this.projectRoot,
-      installV2Skills: config.skills.installV2,
-      installV3Skills: config.skills.installV3,
-      installPlatformSkills: config.skills.installPlatform,
-      overwrite: config.skills.overwrite,
-    });
-
-    const result = await installer.install();
-
-    // Log any errors
-    if (result.errors.length > 0) {
-      console.warn('Skills installation warnings:', result.errors);
-    }
-
-    return result.installed.length;
-  }
-
-  /**
-   * Install V3 QE agents
-   * Copies agents from bundled directory to project's .claude/agents/v3/
-   */
-  private async installAgents(): Promise<number> {
-    const installer = createAgentsInstaller({
-      projectRoot: this.projectRoot,
-      installQEAgents: true,
-      installSubagents: true,
-      overwrite: false,
-    });
-
-    const result = await installer.install();
-
-    // Log any errors
-    if (result.errors.length > 0) {
-      console.warn('Agents installation warnings:', result.errors);
-    }
-
-    return result.installed.length;
-  }
-
-  /**
-   * Save configuration to file
-   * Creates .agentic-qe directory and writes config.yaml
-   */
-  private async saveConfig(config: AQEInitConfig): Promise<void> {
-    if (!config) {
-      throw new Error('No configuration to save');
-    }
-
-    // Create .agentic-qe directory
-    const configDir = join(this.projectRoot, '.agentic-qe');
-    if (!existsSync(configDir)) {
-      mkdirSync(configDir, { recursive: true });
-    }
-
-    // Convert config to YAML format
-    const yaml = this.configToYAML(config);
-
-    // Write config.yaml
-    const configPath = join(configDir, 'config.yaml');
-    writeFileSync(configPath, yaml, 'utf-8');
-  }
-
-  /**
-   * Convert config object to YAML string
-   */
-  private configToYAML(config: AQEInitConfig): string {
-    const lines: string[] = [
-      '# Agentic QE v3 Configuration',
-      '# Generated by aqe init',
-      `# ${new Date().toISOString()}`,
-      '',
-    ];
-
-    lines.push(`version: "${config.version}"`);
-    lines.push('');
-
-    // Project section
-    lines.push('project:');
-    lines.push(`  name: "${config.project.name}"`);
-    lines.push(`  root: "${config.project.root}"`);
-    lines.push(`  type: "${config.project.type}"`);
-    lines.push('');
-
-    // Learning section
-    lines.push('learning:');
-    lines.push(`  enabled: ${config.learning.enabled}`);
-    lines.push(`  embeddingModel: "${config.learning.embeddingModel}"`);
-    lines.push('  hnswConfig:');
-    lines.push(`    M: ${config.learning.hnswConfig.M}`);
-    lines.push(`    efConstruction: ${config.learning.hnswConfig.efConstruction}`);
-    lines.push(`    efSearch: ${config.learning.hnswConfig.efSearch}`);
-    lines.push(`  qualityThreshold: ${config.learning.qualityThreshold}`);
-    lines.push(`  promotionThreshold: ${config.learning.promotionThreshold}`);
-    lines.push(`  pretrainedPatterns: ${config.learning.pretrainedPatterns}`);
-    lines.push('');
-
-    // Routing section
-    lines.push('routing:');
-    lines.push(`  mode: "${config.routing.mode}"`);
-    lines.push(`  confidenceThreshold: ${config.routing.confidenceThreshold}`);
-    lines.push(`  feedbackEnabled: ${config.routing.feedbackEnabled}`);
-    lines.push('');
-
-    // Workers section
-    lines.push('workers:');
-    lines.push('  enabled:');
-    for (const worker of config.workers.enabled) {
-      lines.push(`    - "${worker}"`);
-    }
-    lines.push('  intervals:');
-    for (const [key, value] of Object.entries(config.workers.intervals)) {
-      lines.push(`    ${key}: ${value}`);
-    }
-    lines.push(`  maxConcurrent: ${config.workers.maxConcurrent}`);
-    lines.push(`  daemonAutoStart: ${config.workers.daemonAutoStart}`);
-    lines.push('');
-
-    // Hooks section
-    lines.push('hooks:');
-    lines.push(`  claudeCode: ${config.hooks.claudeCode}`);
-    lines.push(`  preCommit: ${config.hooks.preCommit}`);
-    lines.push(`  ciIntegration: ${config.hooks.ciIntegration}`);
-    lines.push('');
-
-    // Skills section
-    lines.push('skills:');
-    lines.push(`  install: ${config.skills.install}`);
-    lines.push(`  installV2: ${config.skills.installV2}`);
-    lines.push(`  installV3: ${config.skills.installV3}`);
-    lines.push(`  installPlatform: ${config.skills.installPlatform}`);
-    lines.push(`  overwrite: ${config.skills.overwrite}`);
-    lines.push('');
-
-    // Auto-tuning section
-    lines.push('autoTuning:');
-    lines.push(`  enabled: ${config.autoTuning.enabled}`);
-    lines.push('  parameters:');
-    for (const param of config.autoTuning.parameters) {
-      lines.push(`    - "${param}"`);
-    }
-    lines.push(`  evaluationPeriodMs: ${config.autoTuning.evaluationPeriodMs}`);
-    lines.push('');
-
-    // Domains section
-    lines.push('domains:');
-    lines.push('  enabled:');
-    for (const domain of config.domains.enabled) {
-      lines.push(`    - "${domain}"`);
-    }
-    lines.push('  disabled:');
-    for (const domain of config.domains.disabled) {
-      lines.push(`    - "${domain}"`);
-    }
-    lines.push('');
-
-    // Agents section
-    lines.push('agents:');
-    lines.push(`  maxConcurrent: ${config.agents.maxConcurrent}`);
-    lines.push(`  defaultTimeout: ${config.agents.defaultTimeout}`);
-    lines.push('');
-
-    return lines.join('\n');
-  }
-}
-
-/**
- * Factory function to create init orchestrator
- */
-export function createInitOrchestrator(
-  options: InitOrchestratorOptions
-): InitOrchestrator {
-  return new InitOrchestrator(options);
-}
-
-/**
- * Quick initialization with auto-configuration
- */
-export async function quickInit(projectRoot: string): Promise<InitResult> {
-  const orchestrator = createInitOrchestrator({
-    projectRoot,
-    autoMode: true,
-  });
-  return await orchestrator.initialize();
-}
-
-/**
- * Format init result for display
- */
-export function formatInitResult(result: InitResult): string {
-  const lines: string[] = [];
-
-  lines.push('');
-  lines.push('┌─────────────────────────────────────────────────────────────┐');
-  lines.push('│                    AQE v3 Initialization                     │');
-  lines.push('├─────────────────────────────────────────────────────────────┤');
-
-  // Steps
-  for (const step of result.steps) {
-    const icon = step.status === 'success' ? '✓' : step.status === 'error' ? '✗' : '○';
-    lines.push(`│  ${icon} ${step.step.padEnd(50)} ${step.durationMs}ms │`);
-  }
-
-  lines.push('├─────────────────────────────────────────────────────────────┤');
-
-  // Summary
-  lines.push(`│  Project: ${result.config.project.name.padEnd(47)} │`);
-  lines.push(`│  Type: ${result.config.project.type.padEnd(50)} │`);
-  lines.push(`│  Patterns Loaded: ${String(result.summary.patternsLoaded).padEnd(39)} │`);
-  lines.push(`│  Skills Installed: ${String(result.summary.skillsInstalled).padEnd(38)} │`);
-  lines.push(`│  Agents Installed: ${String(result.summary.agentsInstalled).padEnd(38)} │`);
-  lines.push(`│  Workers Started: ${String(result.summary.workersStarted).padEnd(39)} │`);
-  lines.push(`│  Hooks Configured: ${result.summary.hooksConfigured ? 'Yes' : 'No'.padEnd(38)} │`);
-  lines.push(`│  MCP Server: ${result.summary.mcpConfigured ? 'Yes' : 'No'.padEnd(44)} │`);
-  lines.push(`│  CLAUDE.md: ${result.summary.claudeMdGenerated ? 'Yes' : 'No'.padEnd(45)} │`);
-
-  lines.push('├─────────────────────────────────────────────────────────────┤');
-
-  // Final status
-  const status = result.success
-    ? '✓ AQE v3 initialized as self-learning platform'
-    : '✗ Initialization failed';
-  lines.push(`│  ${status.padEnd(57)} │`);
-
-  lines.push('└─────────────────────────────────────────────────────────────┘');
-  lines.push('');
-
-  return lines.join('\n');
-}