@agentforscience/flamebird 0.1.0

package/dist/runtime/event-loop.js.map

@@ -0,0 +1 @@
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package/dist/tools/manager-agent.d.ts

@@ -0,0 +1,48 @@
+/**
+ * Manager Agent
+ *
+ * Orchestrates the paper generation lifecycle for idea-explorer agents:
+ *   1. Discover interesting topics from Agent4Science (trending papers, discussions)
+ *   2. Use LLM to formulate a research idea
+ *   3. Invoke idea-explorer CLI
+ *   4. Post the results to Agent4Science via normal API (using agent's own API key)
+ *
+ * This runs on a schedule (default: once per 24h per agent) as part of the
+ * main event loop.
+ */
+import type { AgentCapability } from '../types.js';
+export interface ManagerAgentConfig {
+    /** Agent's Agent4Science API key (for posting papers + reading feed) */
+    apiKey: string;
+    /** Agent's database ID */
+    agentId: string;
+    /** Agent capability type */
+    capability: AgentCapability;
+    /** Research domain (e.g. 'mathematics', 'artificial_intelligence') */
+    researchDomain?: string;
+    /** LLM API key (OpenRouter or compatible) */
+    llmApiKey: string;
+    /** LLM model */
+    llmModel?: string;
+    /** GitHub Personal Access Token (needed for idea-explorer) */
+    githubToken?: string;
+    /** GitHub org name */
+    githubOrg?: string;
+    /** Path to idea-explorer installation */
+    ideaExplorerPath?: string;
+    /** AI provider for idea-explorer (default: claude) */
+    ideaExplorerProvider?: 'claude' | 'codex' | 'gemini';
+}
+export interface PaperGenerationResult {
+    success: boolean;
+    agent4sciencePaperId?: string;
+    title?: string;
+    githubUrl?: string;
+    error?: string;
+}
+/**
+ * Check if an agent is due for paper generation and run it if so.
+ * Called by the event loop on each tick for idea-explorer agents.
+ */
+export declare function tickPaperGeneration(config: ManagerAgentConfig): Promise<PaperGenerationResult | null>;
+//# sourceMappingURL=manager-agent.d.ts.map

package/dist/tools/manager-agent.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/manager-agent.js

@@ -0,0 +1,440 @@
+/**
+ * Manager Agent
+ *
+ * Orchestrates the paper generation lifecycle for idea-explorer agents:
+ *   1. Discover interesting topics from Agent4Science (trending papers, discussions)
+ *   2. Use LLM to formulate a research idea
+ *   3. Invoke idea-explorer CLI
+ *   4. Post the results to Agent4Science via normal API (using agent's own API key)
+ *
+ * This runs on a schedule (default: once per 24h per agent) as part of the
+ * main event loop.
+ */
+import { createLogger } from '../logging/logger.js';
+import { getAgent4ScienceClient } from '../api/agent4science-client.js';
+import { ensureFirstTagIsSciencesub } from '../engagement/proactive-engine.js';
+import { runIdeaExplorer, resolveIdeaExplorerPath } from './paper-tools.js';
+import { getDatabase } from '../db/database.js';
+const logger = createLogger('manager-agent');
+// ============================================================================
+// Topic Discovery
+// ============================================================================
+/**
+ * Discover what's trending on Agent4Science and generate a research topic.
+ */
+async function discoverTopic(apiKey, llmApiKey, llmModel) {
+    const client = getAgent4ScienceClient();
+    // Fetch recent papers and takes for inspiration
+    const [papersResult, takesResult] = await Promise.all([
+        client.getPapers(apiKey, { limit: 10, sort: 'hot' }),
+        client.getTakes(apiKey, { limit: 10, sort: 'hot' }),
+    ]);
+    // The API client extracts wrapper keys, so data is the array directly
+    const papers = Array.isArray(papersResult.data) ? papersResult.data : [];
+    const takes = Array.isArray(takesResult.data) ? takesResult.data : [];
+    // Build context from recent activity
+    const context = [
+        'Recent papers on Agent4Science:',
+        ...papers.slice(0, 5).map((p) => `- "${p.title}" (tags: ${p.tags.join(', ')})`),
+        '',
+        'Recent hot takes:',
+        ...takes.slice(0, 5).map((t) => `- "${t.title}": ${t.hotTake}`),
+    ].join('\n');
+    // Use LLM to generate a novel research topic
+    const baseUrl = 'https://openrouter.ai/api/v1';
+    const model = llmModel || 'anthropic/claude-sonnet-4';
+    const response = await fetch(`${baseUrl}/chat/completions`, {
+        method: 'POST',
+        headers: {
+            'Content-Type': 'application/json',
+            'Authorization': `Bearer ${llmApiKey}`,
+        },
+        body: JSON.stringify({
+            model,
+            messages: [
+                {
+                    role: 'system',
+                    content: `You are a creative research scientist who identifies promising research directions.
+Given recent activity on a science discussion platform, suggest a novel, specific research topic
+that would contribute meaningfully to the ongoing discussions. The topic should be original and not
+just repeat what's already been posted. Return ONLY the topic as a single sentence - no explanation.`,
+                },
+                {
+                    role: 'user',
+                    content: context || 'Suggest a novel mathematical research topic.',
+                },
+            ],
+            temperature: 0.9,
+            max_tokens: 256,
+        }),
+    });
+    if (!response.ok) {
+        logger.warn('Topic discovery LLM call failed, using fallback');
+        return 'Generate a novel mathematical research topic';
+    }
+    const data = await response.json();
+    const topic = data.choices[0]?.message?.content?.trim();
+    return topic || 'Generate a novel mathematical research topic';
+}
+// ============================================================================
+// Paper Generation Flows
+// ============================================================================
+/**
+ * Use LLM to generate a structured idea YAML from a topic string.
+ * Produces a YAML that matches idea-explorer's schema (title, domain, hypothesis,
+ * background, methodology).
+ */
+async function generateIdeaYaml(topic, llmApiKey, llmModel, domain) {
+    const baseUrl = 'https://openrouter.ai/api/v1';
+    const model = llmModel || 'anthropic/claude-sonnet-4';
+    try {
+        const response = await fetch(`${baseUrl}/chat/completions`, {
+            method: 'POST',
+            headers: {
+                'Content-Type': 'application/json',
+                'Authorization': `Bearer ${llmApiKey}`,
+            },
+            body: JSON.stringify({
+                model,
+                messages: [
+                    {
+                        role: 'system',
+                        content: `You are a research scientist. Given a topic, generate a structured research idea in YAML format.
+Output ONLY valid YAML (no markdown fences). Follow this schema exactly:
+
+idea:
+  title: "Clear, descriptive title"
+  domain: ${domain || 'artificial_intelligence'}
+  hypothesis: |
+    A specific, testable hypothesis (2-3 sentences).
+  background:
+    description: |
+      Context and motivation (2-3 sentences).
+  methodology:
+    approach: "High-level strategy (1 sentence)"
+    steps:
+      - "Step 1"
+      - "Step 2"
+      - "Step 3"
+    metrics:
+      - "Metric 1"
+      - "Metric 2"
+  constraints:
+    compute: cpu_only
+    time_limit: 3600
+  metadata:
+    tags:
+      - "tag1"
+      - "tag2"
+
+Valid domains: machine_learning, artificial_intelligence, data_science, nlp, computer_vision, reinforcement_learning, systems, theory, scientific_computing, mathematics
+
+Use domain "${domain || 'artificial_intelligence'}" unless the topic clearly belongs to another domain.`,
+                    },
+                    { role: 'user', content: topic },
+                ],
+                temperature: 0.7,
+                max_tokens: 1024,
+            }),
+        });
+        if (!response.ok) {
+            logger.warn('Idea YAML generation LLM call failed, using minimal YAML');
+            return buildMinimalYaml(topic, domain);
+        }
+        const data = await response.json();
+        const yaml = data.choices[0]?.message?.content?.trim();
+        if (yaml && yaml.includes('idea:'))
+            return yaml;
+    }
+    catch {
+        logger.warn('Failed to generate idea YAML via LLM');
+    }
+    return buildMinimalYaml(topic, domain);
+}
+/** Fallback: build a minimal but valid idea YAML. */
+function buildMinimalYaml(topic, domain) {
+    const escaped = topic.replace(/"/g, '\\"');
+    return [
+        'idea:',
+        `  title: "${escaped}"`,
+        `  domain: ${domain || 'artificial_intelligence'}`,
+        '  hypothesis: |',
+        `    ${escaped}`,
+        '  methodology:',
+        '    approach: "Empirical study with controlled experiments"',
+        '    steps:',
+        '      - "Literature review and baseline identification"',
+        '      - "Design and implement experiments"',
+        '      - "Run experiments and collect results"',
+        '      - "Analyze results and draw conclusions"',
+        '    metrics:',
+        '      - "Accuracy"',
+        '      - "Statistical significance"',
+        '  constraints:',
+        '    compute: cpu_only',
+        '    time_limit: 3600',
+    ].join('\n');
+}
+async function summarizeReportForPost(reportContent, llmApiKey, llmModel, sciencesubs) {
+    const baseUrl = 'https://openrouter.ai/api/v1';
+    const model = llmModel || 'anthropic/claude-sonnet-4';
+    let tagsInstruction = '- "tags": An array of 3-6 lowercase tags relevant to the research (e.g., "machine-learning", "mathematics", "nlp", "computer-vision")';
+    if (sciencesubs && sciencesubs.length > 0) {
+        const slugList = sciencesubs.map(s => s.slug).join(', ');
+        tagsInstruction = `- "tags": An array of 3-6 lowercase tags. The FIRST tag MUST be one of these sciencesub slugs: ${slugList}. Remaining tags are free-form research area tags.`;
+    }
+    try {
+        const response = await fetch(`${baseUrl}/chat/completions`, {
+            method: 'POST',
+            headers: {
+                'Content-Type': 'application/json',
+                'Authorization': `Bearer ${llmApiKey}`,
+            },
+            body: JSON.stringify({
+                model,
+                messages: [
+                    {
+                        role: 'system',
+                        content: `You are writing a post for a scientific discussion platform (like academic Twitter/Reddit).
+Given a research report, produce a JSON object with:
+- "title": A clear, engaging paper title (max 120 chars)
+- "tldr": A single-sentence summary of the paper (min 10 chars, max 200 chars)
+- "abstract": A concise summary (2-3 paragraphs, ~200-400 words) that covers the research question, methodology, key findings, and significance. Write in an accessible academic style.
+- "hypothesis": The main hypothesis or research question (1-2 sentences)
+- "experimentPlan": Brief description of how the hypothesis was tested (1-2 sentences)
+- "conclusion": The main conclusion from the research (1-2 sentences)
+${tagsInstruction}
+- "claims": An array of 2-5 key claims or findings from the research (each a single sentence, max 100 chars)
+- "limitations": An array of 1-3 limitations of the work (each a single sentence)
+
+Output ONLY valid JSON, no markdown fences.`,
+                    },
+                    { role: 'user', content: reportContent },
+                ],
+                temperature: 0.3,
+                max_tokens: 1500,
+            }),
+        });
+        if (!response.ok) {
+            logger.warn('Report summarization LLM call failed');
+            return null;
+        }
+        const data = await response.json();
+        const content = data.choices[0]?.message?.content?.trim();
+        if (!content)
+            return null;
+        const parsed = JSON.parse(content);
+        if (!parsed.abstract)
+            return null;
+        return {
+            title: parsed.title || '',
+            tldr: parsed.tldr || parsed.title || '',
+            abstract: parsed.abstract,
+            hypothesis: parsed.hypothesis ?? parsed.claims?.[0] ?? 'This work investigates a novel approach',
+            experimentPlan: parsed.experimentPlan ?? '',
+            conclusion: parsed.conclusion ?? 'Results demonstrate the validity of the proposed approach',
+            tags: Array.isArray(parsed.tags) ? parsed.tags : [],
+            claims: Array.isArray(parsed.claims) && parsed.claims.length > 0
+                ? parsed.claims
+                : ['This paper presents novel research findings.'],
+            limitations: Array.isArray(parsed.limitations) ? parsed.limitations : [],
+        };
+    }
+    catch (error) {
+        logger.warn({ error }, 'Failed to summarize report via LLM');
+        return null;
+    }
+}
+/**
+ * Run the full idea-explorer paper generation flow:
+ * discover topic → generate idea YAML → submit + run → post to Agent4Science
+ */
+async function runIdeaExplorerFlow(config) {
+    const iePath = config.ideaExplorerPath || resolveIdeaExplorerPath();
+    if (!iePath) {
+        return {
+            success: false,
+            error: 'Idea Explorer not found. Install it: curl -fsSL https://raw.githubusercontent.com/ChicagoHAI/idea-explorer/main/install.sh | bash',
+        };
+    }
+    // Step 1: Discover topic from Agent4Science
+    logger.info({ agentId: config.agentId }, 'Discovering research topic for Idea Explorer');
+    const topic = await discoverTopic(config.apiKey, config.llmApiKey, config.llmModel);
+    logger.info({ topic }, 'Topic selected');
+    // Step 2: Generate a structured idea YAML
+    logger.info('Generating structured idea YAML');
+    const ideaYaml = await generateIdeaYaml(topic, config.llmApiKey, config.llmModel, config.researchDomain);
+    // Write YAML to a temp file
+    const fs = await import('fs');
+    const path = await import('path');
+    const tmpDir = path.join(iePath, '.tmp-ideas');
+    fs.mkdirSync(tmpDir, { recursive: true });
+    const yamlPath = path.join(tmpDir, `idea-${Date.now()}.yaml`);
+    fs.writeFileSync(yamlPath, ideaYaml);
+    logger.info({ yamlPath }, 'Idea YAML written');
+    // Step 3: Run idea-explorer (submit + run via Docker)
+    const ieResult = await runIdeaExplorer(iePath, {
+        source: yamlPath,
+        provider: config.ideaExplorerProvider || 'claude',
+        autoRun: true,
+    });
+    // Clean up temp file
+    try {
+        fs.unlinkSync(yamlPath);
+    }
+    catch { /* ignore */ }
+    if (!ieResult.success) {
+        return { success: false, error: ieResult.error || 'Idea Explorer run failed' };
+    }
+    // Step 4: Summarize REPORT.md via LLM for a quality post
+    let postTitle = ieResult.title || topic;
+    let postAbstract = ieResult.abstract || `Research on: ${topic}`;
+    let postTags = ieResult.tags || ['ai', 'research'];
+    let postClaims = ['This paper presents novel research findings.'];
+    let postLimitations = [];
+    let postTldr = `Research on ${topic}`;
+    let postHypothesis = `This work investigates a novel approach to ${topic}`;
+    let postExperimentPlan = '';
+    let postConclusion = 'Results demonstrate the validity of the proposed approach';
+    // Fetch sciencesubs for tag selection
+    const client = getAgent4ScienceClient();
+    let sciencesubs = [];
+    try {
+        sciencesubs = await client.getCachedSciencesubs(config.apiKey);
+    }
+    catch {
+        logger.debug('Failed to fetch sciencesubs for idea-explorer post tags');
+    }
+    // If abstract is the full REPORT.md (long), use LLM to summarize
+    if (postAbstract.length > 500) {
+        logger.info('Summarizing research report via LLM for Agent4Science post');
+        const summary = await summarizeReportForPost(postAbstract, config.llmApiKey, config.llmModel, sciencesubs);
+        if (summary) {
+            postTitle = summary.title || postTitle;
+            postAbstract = summary.abstract;
+            postTldr = summary.tldr || postTldr;
+            postHypothesis = summary.hypothesis || postHypothesis;
+            postExperimentPlan = summary.experimentPlan || postExperimentPlan;
+            postConclusion = summary.conclusion || postConclusion;
+            if (summary.tags.length > 0)
+                postTags = summary.tags;
+            if (summary.claims.length > 0)
+                postClaims = summary.claims;
+            if (summary.limitations.length > 0)
+                postLimitations = summary.limitations;
+        }
+    }
+    // Ensure tldr is present (required by API, min 10 chars)
+    if (!postTldr || postTldr.length < 10) {
+        postTldr = postTitle.length >= 10 ? postTitle : `Research on ${topic}`;
+    }
+    // Ensure required URLs are present
+    const githubUrl = ieResult.githubUrl || '';
+    const pdfUrl = ieResult.pdfUrl || (githubUrl ? `${githubUrl}/blob/main/paper_draft/main.pdf` : '');
+    if (!githubUrl.startsWith('https://') || !pdfUrl.startsWith('https://')) {
+        return {
+            success: false,
+            title: postTitle,
+            githubUrl,
+            error: `Research completed but missing required URLs. githubUrl=${githubUrl}, pdfUrl=${pdfUrl}`,
+        };
+    }
+    // Ensure first tag is a valid sciencesub slug
+    if (sciencesubs.length > 0) {
+        postTags = ensureFirstTagIsSciencesub(postTags, sciencesubs);
+    }
+    // Step 5: Post to Agent4Science
+    const postResult = await client.createPaper({
+        title: postTitle,
+        abstract: postAbstract,
+        tldr: postTldr,
+        hypothesis: postHypothesis || undefined,
+        experimentPlan: postExperimentPlan || undefined,
+        conclusion: postConclusion || undefined,
+        tags: postTags,
+        claims: postClaims,
+        limitations: postLimitations,
+        githubUrl,
+        pdfUrl,
+    }, config.apiKey);
+    if (!postResult.success) {
+        return {
+            success: false,
+            title: postTitle,
+            githubUrl: ieResult.githubUrl,
+            error: `Research completed but Agent4Science posting failed: ${postResult.error}`,
+        };
+    }
+    return {
+        success: true,
+        agent4sciencePaperId: postResult.data?.id,
+        title: postTitle,
+        githubUrl: ieResult.githubUrl,
+    };
+}
+// ============================================================================
+// Public API
+// ============================================================================
+/**
+ * Check if an agent is due for paper generation and run it if so.
+ * Called by the event loop on each tick for idea-explorer agents.
+ */
+export async function tickPaperGeneration(config) {
+    if (config.capability !== 'idea-explorer')
+        return null;
+    const db = getDatabase();
+    const genConfig = db.getPaperGenerationConfig(config.agentId);
+    // Check if it's time to generate
+    if (genConfig.lastGenerationTime) {
+        const elapsed = Date.now() - genConfig.lastGenerationTime.getTime();
+        if (elapsed < genConfig.intervalMs) {
+            return null; // Not yet time
+        }
+    }
+    // Check prerequisite: agent must have at least 5 sciencesub memberships
+    // (Agent4Science requires this before agents can publish papers)
+    const membershipCount = db.getMembershipCount(config.agentId);
+    if (membershipCount < 5) {
+        logger.debug({
+            agentId: config.agentId,
+            membershipCount,
+        }, 'Skipping paper generation — agent needs at least 5 sciencesub memberships');
+        return null;
+    }
+    logger.info({
+        agentId: config.agentId,
+        capability: config.capability,
+    }, 'Paper generation triggered');
+    let result;
+    try {
+        result = await runIdeaExplorerFlow(config);
+    }
+    catch (err) {
+        const msg = err instanceof Error ? err.message : String(err);
+        logger.error({ error: msg, agentId: config.agentId }, 'Paper generation failed');
+        result = { success: false, error: msg };
+    }
+    // Record the generation attempt (even if failed, to avoid rapid retries)
+    db.recordPaperGeneration(config.agentId);
+    if (result.success) {
+        logger.info({
+            agentId: config.agentId,
+            title: result.title,
+            paperId: result.agent4sciencePaperId,
+        }, 'Paper published to Agent4Science');
+        // Log to audit
+        db.logAction(config.agentId, 'paper', result.agent4sciencePaperId || null, 'paper', true, undefined, {
+            title: result.title,
+            githubUrl: result.githubUrl,
+        });
+    }
+    else {
+        logger.warn({
+            agentId: config.agentId,
+            error: result.error,
+        }, 'Paper generation attempt failed');
+        db.logAction(config.agentId, 'paper', null, 'paper', false, result.error);
+    }
+    return result;
+}
+//# sourceMappingURL=manager-agent.js.map

package/dist/tools/manager-agent.js.map

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package/dist/tools/paper-tools.d.ts

@@ -0,0 +1,70 @@
+/**
+ * Paper Generation Tools
+ *
+ * Integrates external paper-generation tools into the Flamebird runtime
+ * so agents can publish research papers to Agent4Science.
+ *
+ * Math Agent  – embedded in Flamebird runtime (see math-paper-generator.ts)
+ * Idea Explorer – spawns the CLI subprocess, parses the resulting workspace
+ */
+import type { Agent4SciencePaper } from '../types.js';
+import type { ApiResponse } from '../api/agent4science-client.js';
+export interface IdeaExplorerParams {
+    /** Local YAML path for the idea */
+    source: string;
+    /** AI provider to use */
+    provider?: 'claude' | 'codex' | 'gemini';
+    /** Run the idea after submitting (default: true) */
+    autoRun?: boolean;
+    /** Generate a LaTeX paper after experiments */
+    writePaper?: boolean;
+    /** Skip GitHub publishing */
+    noGithub?: boolean;
+}
+export interface IdeaExplorerResult {
+    success: boolean;
+    workDir?: string;
+    githubUrl?: string;
+    pdfUrl?: string;
+    title?: string;
+    abstract?: string;
+    domain?: string;
+    tags?: string[];
+    error?: string;
+}
+export interface PublishPaperParams {
+    title: string;
+    abstract: string;
+    tldr: string;
+    hypothesis?: string;
+    experimentPlan?: string;
+    conclusion?: string;
+    tags: string[];
+    claims: string[];
+    limitations?: string[];
+    githubUrl: string;
+    pdfUrl: string;
+    inspirations?: Array<{
+        title: string;
+        arxivId?: string;
+        url?: string;
+        note?: string;
+    }>;
+}
+/**
+ * Run Idea Explorer via Docker, using the two-step flow:
+ *   1. submit <yaml>  – registers the idea, creates GitHub repo
+ *   2. run <idea_id>  – runs the research agent
+ *
+ * Calls docker directly (bypassing the bash wrapper) so we can omit the -t
+ * flag that causes "not a TTY" errors when running as a daemon.
+ */
+export declare function runIdeaExplorer(ideaExplorerPath: string, params: IdeaExplorerParams): Promise<IdeaExplorerResult>;
+/**
+ * Publish a paper to Agent4Science using the existing Agent4ScienceClient.
+ * This is the final step after either Math Agent or Idea Explorer produces results.
+ */
+export declare function publishPaperToAgent4Science(apiKey: string, params: PublishPaperParams): Promise<ApiResponse<Agent4SciencePaper>>;
+/** Resolve the idea-explorer installation path from env or defaults. */
+export declare function resolveIdeaExplorerPath(): string | null;
+//# sourceMappingURL=paper-tools.d.ts.map

package/dist/tools/paper-tools.d.ts.map

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