@agent-wiki/mcp-server 0.3.0

package/dist/server.js

@@ -0,0 +1,474 @@
+/**
+ * MCP Server — Exposes Agent Wiki as tools to any MCP-compatible agent.
+ *
+ * Architecture (Karpathy LLM Wiki, upgraded):
+ *
+ *   raw/  → Immutable source layer (raw_add, raw_list, raw_read, raw_verify)
+ *   wiki/ → Mutable knowledge layer (read, write, delete, search, lint, synthesize)
+ *
+ * The agent IS the LLM. This server is pure data operations.
+ */
+import { Server } from "@modelcontextprotocol/sdk/server/index.js";
+import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { CallToolRequestSchema, ListToolsRequestSchema, } from "@modelcontextprotocol/sdk/types.js";
+import { readFileSync } from "node:fs";
+import { join } from "node:path";
+import { Wiki } from "./wiki.js";
+export function createServer(wikiPath, workspace) {
+    const wiki = new Wiki(wikiPath, workspace);
+    const server = new Server({ name: "agent-wiki", version: "0.3.0" }, { capabilities: { tools: {} } });
+    // ── List Tools ──────────────────────────────────────────────
+    server.setRequestHandler(ListToolsRequestSchema, async () => ({
+        tools: [
+            // ═══════════════════════════════════════════════════════
+            //  RAW LAYER — Immutable source documents
+            // ═══════════════════════════════════════════════════════
+            {
+                name: "raw_add",
+                description: "Add a raw source document to the knowledge base. Raw files are IMMUTABLE — once added, they cannot be modified or overwritten. Each file gets a .meta.yaml sidecar with provenance (source URL, download time, SHA-256 hash). Use this for downloaded articles, papers, web pages, data files. Supports both content string and local file path (physical copy).",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        filename: {
+                            type: "string",
+                            description: "Filename in raw/ (e.g. 'paper-attention.pdf', 'article-yolo.md')",
+                        },
+                        content: {
+                            type: "string",
+                            description: "File content as string (for text files). Either content or source_path is required.",
+                        },
+                        source_path: {
+                            type: "string",
+                            description: "Absolute path to a local file to physically copy into raw/. The original file is NOT modified — a full copy is made. Either content or source_path is required.",
+                        },
+                        source_url: {
+                            type: "string",
+                            description: "Original URL where the document was downloaded from",
+                        },
+                        description: {
+                            type: "string",
+                            description: "Brief description of what this source contains",
+                        },
+                        tags: {
+                            type: "array",
+                            items: { type: "string" },
+                            description: "Tags for categorization",
+                        },
+                    },
+                    required: ["filename"],
+                },
+            },
+            {
+                name: "raw_list",
+                description: "List all raw source documents with metadata (path, source URL, download time, hash, size).",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "raw_read",
+                description: "Read a raw source document's content and metadata. Raw files are immutable — this is read-only.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        filename: {
+                            type: "string",
+                            description: "Filename relative to raw/ (e.g. 'article-yolo.md')",
+                        },
+                    },
+                    required: ["filename"],
+                },
+            },
+            {
+                name: "raw_verify",
+                description: "Verify integrity of all raw files by checking SHA-256 hashes against stored metadata. Detects corruption or tampering.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "raw_fetch",
+                description: "Download a file from a URL and save it to raw/ as an immutable source document. Automatically generates .meta.yaml sidecar with provenance (source URL, download time, SHA-256 hash). Smart URL handling: arXiv abstract URLs (arxiv.org/abs/XXXX) are auto-converted to PDF download links. Supports any downloadable file: PDFs, HTML pages, images, data files, etc.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        url: {
+                            type: "string",
+                            description: "URL to download from. arXiv abs URLs are auto-converted to PDF links (e.g. https://arxiv.org/abs/2304.00501 → PDF download)",
+                        },
+                        filename: {
+                            type: "string",
+                            description: "Optional filename in raw/. If omitted, auto-inferred from URL (arXiv papers get clean names like 'arxiv-2304-00501.pdf')",
+                        },
+                        description: {
+                            type: "string",
+                            description: "Brief description of what this source document contains",
+                        },
+                        tags: {
+                            type: "array",
+                            items: { type: "string" },
+                            description: "Tags for categorization",
+                        },
+                    },
+                    required: ["url"],
+                },
+            },
+            // ═══════════════════════════════════════════════════════
+            //  WIKI LAYER — Mutable compiled knowledge
+            // ═══════════════════════════════════════════════════════
+            {
+                name: "wiki_read",
+                description: "Read a wiki page by path. Returns frontmatter + Markdown content.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        page: {
+                            type: "string",
+                            description: "Page path relative to wiki/ (e.g. 'concept-gil.md')",
+                        },
+                    },
+                    required: ["page"],
+                },
+            },
+            {
+                name: "wiki_write",
+                description: "Create or update a wiki page. Content should include YAML frontmatter (title, type, tags, sources) and Markdown body. Timestamps (created/updated) are auto-managed. Wiki pages are MUTABLE — they represent compiled knowledge that improves over time.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        page: {
+                            type: "string",
+                            description: "Page path relative to wiki/",
+                        },
+                        content: {
+                            type: "string",
+                            description: "Full page content including YAML frontmatter and Markdown body",
+                        },
+                        source: {
+                            type: "string",
+                            description: "Provenance — why this write is happening",
+                        },
+                    },
+                    required: ["page", "content"],
+                },
+            },
+            {
+                name: "wiki_delete",
+                description: "Delete a wiki page. Cannot delete system pages (index.md, log.md, timeline.md).",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        page: {
+                            type: "string",
+                            description: "Page path relative to wiki/",
+                        },
+                    },
+                    required: ["page"],
+                },
+            },
+            {
+                name: "wiki_list",
+                description: "List all wiki pages, optionally filtered by entity type or tag.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        type: {
+                            type: "string",
+                            description: "Filter by entity type (person, concept, event, artifact, comparison, summary, how-to, note, synthesis)",
+                        },
+                        tag: {
+                            type: "string",
+                            description: "Filter by tag",
+                        },
+                    },
+                },
+            },
+            {
+                name: "wiki_search",
+                description: "Full-text keyword search across all wiki pages. Returns paths, scores, and snippets sorted by relevance.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        query: {
+                            type: "string",
+                            description: "Search query (keywords)",
+                        },
+                        limit: {
+                            type: "number",
+                            description: "Max results (default: 10)",
+                        },
+                    },
+                    required: ["query"],
+                },
+            },
+            {
+                name: "wiki_lint",
+                description: "Run comprehensive health checks. Detects: contradictions between pages, orphan pages, broken [[links]], missing sources, stale content, raw file integrity (SHA-256 verification), synthesis page integrity. Returns categorized issues with fix suggestions.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "wiki_log",
+                description: "View the operation history log with timestamps, operations, affected pages, and summaries.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        limit: {
+                            type: "number",
+                            description: "Max entries (default: 20)",
+                        },
+                    },
+                },
+            },
+            {
+                name: "wiki_init",
+                description: "Initialize a new knowledge base. Creates wiki/, raw/, schemas/ directories and default templates. Optionally use a separate workspace directory for all data files.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        path: {
+                            type: "string",
+                            description: "Config root — where .agent-wiki.yaml is created (default: current directory)",
+                        },
+                        workspace: {
+                            type: "string",
+                            description: "Separate workspace directory for all data (wiki/, raw/, schemas/). If omitted, data goes in path.",
+                        },
+                    },
+                },
+            },
+            {
+                name: "wiki_config",
+                description: "Show the current workspace configuration: config root, workspace directory, data directories (wiki/, raw/, schemas/), and lint settings.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "wiki_schemas",
+                description: "List available entity type templates (person, concept, event, artifact, comparison, summary, how-to, note, synthesis). Use these to structure wiki pages consistently.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "wiki_rebuild_index",
+                description: "Rebuild the index.md from all wiki pages. Organizes pages by type with counts and dates.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "wiki_rebuild_timeline",
+                description: "Rebuild timeline.md — a chronological view of all knowledge entries, grouped by date.",
+                inputSchema: {
+                    type: "object",
+                    properties: {},
+                },
+            },
+            {
+                name: "wiki_classify",
+                description: "Auto-classify content into entity type (person, concept, event, artifact, comparison, summary, how-to, synthesis, note) and suggest tags. Pure heuristic — zero LLM dependency. Useful for previewing classification before writing, or for enriching existing pages. Returns type, tags, and confidence score.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        content: {
+                            type: "string",
+                            description: "The full page content (with or without frontmatter) to classify",
+                        },
+                    },
+                    required: ["content"],
+                },
+            },
+            {
+                name: "wiki_synthesize",
+                description: "Prepare context for knowledge synthesis — reads multiple wiki pages and returns their content so the agent can distill them into a new synthesis page. Synthesis pages represent higher-order knowledge derived from combining multiple sources.",
+                inputSchema: {
+                    type: "object",
+                    properties: {
+                        pages: {
+                            type: "array",
+                            items: { type: "string" },
+                            description: "List of page paths to synthesize from (e.g. ['concept-yolo.md', 'comparison-detectors.md'])",
+                        },
+                    },
+                    required: ["pages"],
+                },
+            },
+        ],
+    }));
+    // ── Call Tool ───────────────────────────────────────────────
+    server.setRequestHandler(CallToolRequestSchema, async (request) => {
+        const { name, arguments: args = {} } = request.params;
+        try {
+            const result = await handleTool(wiki, name, args);
+            return { content: [{ type: "text", text: result }] };
+        }
+        catch (err) {
+            const msg = err instanceof Error ? err.message : String(err);
+            return {
+                content: [{ type: "text", text: `Error: ${msg}` }],
+                isError: true,
+            };
+        }
+    });
+    return server;
+}
+async function handleTool(wiki, name, args) {
+    switch (name) {
+        // ═══ RAW LAYER ═══
+        case "raw_add": {
+            const doc = wiki.rawAdd(args.filename, {
+                content: args.content,
+                sourcePath: args.source_path,
+                sourceUrl: args.source_url,
+                description: args.description,
+                tags: args.tags,
+            });
+            return JSON.stringify({ ok: true, document: doc }, null, 2);
+        }
+        case "raw_list": {
+            const docs = wiki.rawList();
+            return JSON.stringify({ documents: docs, count: docs.length }, null, 2);
+        }
+        case "raw_read": {
+            const result = wiki.rawRead(args.filename);
+            if (!result)
+                return `Raw file not found: ${args.filename}`;
+            return JSON.stringify({
+                meta: result.meta,
+                content: result.content.length > 10000
+                    ? result.content.slice(0, 10000) + "\n\n... (truncated, " + result.content.length + " chars total)"
+                    : result.content,
+            }, null, 2);
+        }
+        case "raw_verify": {
+            const results = wiki.rawVerify();
+            const corrupted = results.filter((r) => r.status === "corrupted");
+            const missingMeta = results.filter((r) => r.status === "missing-meta");
+            return JSON.stringify({
+                total: results.length,
+                ok: results.filter((r) => r.status === "ok").length,
+                corrupted: corrupted.length,
+                missingMeta: missingMeta.length,
+                details: results,
+            }, null, 2);
+        }
+        case "raw_fetch": {
+            const doc = await wiki.rawFetch(args.url, {
+                filename: args.filename,
+                description: args.description,
+                tags: args.tags,
+            });
+            return JSON.stringify({ ok: true, document: doc }, null, 2);
+        }
+        // ═══ WIKI LAYER ═══
+        case "wiki_read": {
+            const page = wiki.read(args.page);
+            if (!page)
+                return `Page not found: ${args.page}`;
+            try {
+                return readFileSync(join(wiki.config.wikiDir, args.page), "utf-8");
+            }
+            catch {
+                return `Page not found: ${args.page}`;
+            }
+        }
+        case "wiki_write": {
+            // Auto-classify if type/tags are missing
+            const enrichedContent = wiki.autoClassifyContent(args.content);
+            wiki.write(args.page, enrichedContent, args.source);
+            const classification = wiki.classify(enrichedContent);
+            return JSON.stringify({
+                ok: true,
+                page: args.page,
+                autoClassified: { type: classification.type, tags: classification.tags, confidence: classification.confidence },
+            });
+        }
+        case "wiki_delete": {
+            const existed = wiki.delete(args.page);
+            return JSON.stringify({ ok: existed, page: args.page });
+        }
+        case "wiki_list": {
+            const pages = wiki.list(args.type, args.tag);
+            return JSON.stringify({ pages, count: pages.length }, null, 2);
+        }
+        case "wiki_search": {
+            const results = wiki.search(args.query, args.limit ?? 10);
+            return JSON.stringify({ results, count: results.length }, null, 2);
+        }
+        case "wiki_lint": {
+            const report = wiki.lint();
+            return JSON.stringify(report, null, 2);
+        }
+        case "wiki_log": {
+            const entries = wiki.getLog(args.limit ?? 20);
+            return JSON.stringify({ entries }, null, 2);
+        }
+        case "wiki_init": {
+            const path = args.path ?? ".";
+            const ws = args.workspace;
+            Wiki.init(path, ws);
+            return JSON.stringify({
+                ok: true,
+                configRoot: path,
+                workspace: ws ?? path,
+                message: ws
+                    ? `Knowledge base initialized. Config at ${path}, data at ${ws}`
+                    : `Knowledge base initialized at ${path} with wiki/, raw/, schemas/`,
+            });
+        }
+        case "wiki_config": {
+            const cfg = wiki.config;
+            return JSON.stringify({
+                configRoot: cfg.configRoot,
+                workspace: cfg.workspace,
+                wikiDir: cfg.wikiDir,
+                rawDir: cfg.rawDir,
+                schemasDir: cfg.schemasDir,
+                lint: cfg.lint,
+                separateWorkspace: cfg.configRoot !== cfg.workspace,
+            }, null, 2);
+        }
+        case "wiki_schemas": {
+            const schemas = wiki.schemas();
+            return JSON.stringify({ schemas }, null, 2);
+        }
+        case "wiki_rebuild_index": {
+            wiki.rebuildIndex();
+            return JSON.stringify({ ok: true, message: "Index rebuilt" });
+        }
+        case "wiki_rebuild_timeline": {
+            wiki.rebuildTimeline();
+            return JSON.stringify({ ok: true, message: "Timeline rebuilt" });
+        }
+        case "wiki_classify": {
+            const classification = wiki.classify(args.content);
+            return JSON.stringify(classification, null, 2);
+        }
+        case "wiki_synthesize": {
+            const pagePaths = args.pages;
+            if (!pagePaths || pagePaths.length === 0) {
+                return JSON.stringify({ error: "Provide at least one page path to synthesize from" });
+            }
+            const ctx = wiki.synthesizeContext(pagePaths);
+            return JSON.stringify(ctx, null, 2);
+        }
+        default:
+            return `Unknown tool: ${name}`;
+    }
+}
+// ── Entry point for stdio transport ───────────────────────────
+export async function runServer(wikiPath, workspace) {
+    const server = createServer(wikiPath, workspace);
+    const transport = new StdioServerTransport();
+    await server.connect(transport);
+}
+//# sourceMappingURL=server.js.map

package/dist/server.js.map

@@ -0,0 +1 @@
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