@agent-native/core 0.111.2 → 0.111.3

package/dist/cli/upgrade.js

@@ -428,6 +428,17 @@ const FAILURE_GUIDANCE = [
     "Revert those changes if present, fix the app-level compile/runtime error, then re-run:",
     "  npx @agent-native/core@latest upgrade",
 ].join("\n");
+function applyCodemodDependencyPlan(codemodResult) {
+    const dependencyFiles = new Set(codemodResult.dependencyFiles);
+    const applied = [];
+    for (const change of codemodResult.changes) {
+        if (!dependencyFiles.has(change.file))
+            continue;
+        fs.writeFileSync(change.file, change.after);
+        applied.push(change);
+    }
+    return applied;
+}
 export async function runUpgrade(argv, io = defaultIo) {
     const opts = parseUpgradeArgs(argv);
     if (opts.help || opts.command === "help") {
@@ -535,34 +546,42 @@ export async function runUpgrade(argv, io = defaultIo) {
             detail: `Updated ${doctor.bumps.length} @agent-native/* dependency pin(s)`,
         });
     }
+    let codemodPlan;
     if (opts.codemods) {
-        const { formatMigrationCodemodDiff, runMigrationCodemods } = await import("./migration-codemod.js");
-        const codemodResult = runMigrationCodemods({
+        const codemodModule = await import("./migration-codemod.js");
+        const codemodResult = codemodModule.runMigrationCodemods({
             root: project.root,
-            apply: !dryRun,
+            targetExists: codemodModule.createMigrationPlanningTargetResolver(project.root),
         });
-        const diff = formatMigrationCodemodDiff(codemodResult, project.root);
-        result.codemod = {
-            files: codemodResult.changes.map((change) => relativeTo(project.root, change.file)),
-            warnings: codemodResult.warnings,
-            diff,
+        const diff = codemodModule.formatMigrationCodemodDiff(codemodResult, project.root);
+        const dependencyChanges = dryRun
+            ? []
+            : applyCodemodDependencyPlan(codemodResult);
+        codemodPlan = {
+            module: codemodModule,
+            dependencyChanges,
         };
-        result.steps.push({
-            id: "codemods",
-            status: codemodResult.changes.length === 0
-                ? "skipped"
-                : dryRun
-                    ? "planned"
-                    : "ok",
-            detail: codemodResult.changes.length === 0
-                ? "No manifest migrations found"
-                : `${dryRun ? "Would update" : "Updated"} ${codemodResult.changes.length} file(s)`,
-        });
-        if (!opts.json && diff) {
+        if (dryRun) {
+            result.codemod = {
+                files: codemodResult.changes.map((change) => relativeTo(project.root, change.file)),
+                warnings: codemodResult.warnings,
+                diff,
+            };
+        }
+        if (dryRun) {
+            result.steps.push({
+                id: "codemods",
+                status: codemodResult.changes.length === 0 ? "skipped" : "planned",
+                detail: codemodResult.changes.length === 0
+                    ? "No manifest migrations found"
+                    : `Would update ${codemodResult.changes.length} file(s)`,
+            });
+        }
+        if (dryRun && !opts.json && diff) {
             io.log(diff);
             io.log("");
         }
-        if (!opts.json) {
+        if (dryRun && !opts.json) {
             for (const warning of codemodResult.warnings) {
                 io.err(`[codemods] ${warning}`);
             }
@@ -593,6 +612,23 @@ export async function runUpgrade(argv, io = defaultIo) {
             result.ok = false;
             result.exitCode = spawned.status ?? 1;
             result.message = `${pm} install failed`;
+            if (codemodPlan && codemodPlan.dependencyChanges.length > 0) {
+                const dependencyResult = {
+                    changes: codemodPlan.dependencyChanges,
+                    dependencyFiles: codemodPlan.dependencyChanges.map((change) => change.file),
+                    warnings: [],
+                };
+                const diff = codemodPlan.module.formatMigrationCodemodDiff(dependencyResult, project.root);
+                result.codemod = {
+                    files: dependencyResult.changes.map((change) => relativeTo(project.root, change.file)),
+                    warnings: [],
+                    diff,
+                };
+                if (!opts.json && diff) {
+                    io.log(diff);
+                    io.log("");
+                }
+            }
             result.steps.push({
                 id: "install",
                 status: "failed",
@@ -603,6 +639,44 @@ export async function runUpgrade(argv, io = defaultIo) {
         }
         result.steps.push({ id: "install", status: "ok", detail: `${pm} install` });
     }
+    if (codemodPlan && !dryRun) {
+        const applied = codemodPlan.module.runMigrationCodemods({
+            root: project.root,
+            apply: true,
+        });
+        const actualResult = {
+            changes: [...codemodPlan.dependencyChanges, ...applied.changes],
+            dependencyFiles: codemodPlan.dependencyChanges.map((change) => change.file),
+            warnings: applied.warnings,
+        };
+        const diff = codemodPlan.module.formatMigrationCodemodDiff(actualResult, project.root);
+        const files = [
+            ...new Set(actualResult.changes.map((change) => change.file)),
+        ];
+        result.codemod = {
+            files: files.map((file) => relativeTo(project.root, file)),
+            warnings: actualResult.warnings,
+            diff,
+        };
+        result.steps.push({
+            id: "codemods",
+            status: files.length === 0 ? "skipped" : "ok",
+            detail: files.length === 0
+                ? "No resolvable manifest migrations found"
+                : opts.skipInstall
+                    ? `Updated ${files.length} file(s) without installing dependencies`
+                    : `Updated ${files.length} file(s) after dependency installation`,
+        });
+        if (!opts.json && diff) {
+            io.log(diff);
+            io.log("");
+        }
+        if (!opts.json) {
+            for (const warning of actualResult.warnings) {
+                io.err(`[codemods] ${warning}`);
+            }
+        }
+    }
     // Skills refresh.
     if (opts.skipSkills) {
         result.steps.push({

package/dist/cli/upgrade.js.map

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* `agent-native upgrade` — bring an existing Agent Native app/workspace current.\n *\n * Older branches often break after a core bump. Agents then invent\n * `pnpm.overrides` / patches against `@agent-native/*` (especially dispatch),\n * which makes things worse. This command is the supported path:\n *\n *   1. Doctor: refuse or warn on framework overrides/patches\n *   2. Bump `@agent-native/*` deps to `latest` (unless file:/link:/workspace:)\n *   3. Install\n *   4. Refresh scaffold skills (`skills update scaffold --project`)\n *   5. Verify with typecheck when available\n *\n * On failure: print the error and stop. Do not patch framework packages.\n */\nimport { spawnSync, type SpawnSyncReturns } from \"node:child_process\";\nimport fs from \"node:fs\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\nconst AGENT_NATIVE_SCOPE = \"@agent-native/\";\nconst PINNABLE_VERSION = \"latest\";\n\nexport type UpgradeCommand = \"run\" | \"check\" | \"help\";\n\nexport interface UpgradeCliOptions {\n  command: UpgradeCommand;\n  cwd?: string;\n  dryRun?: boolean;\n  codemods?: boolean;\n  yes?: boolean;\n  skipInstall?: boolean;\n  skipVerify?: boolean;\n  skipSkills?: boolean;\n  json?: boolean;\n  help?: boolean;\n  /** Force past doctor findings that would otherwise block (not recommended). */\n  force?: boolean;\n}\n\nexport interface PackageJsonLike {\n  name?: string;\n  version?: string;\n  dependencies?: Record<string, string>;\n  devDependencies?: Record<string, string>;\n  optionalDependencies?: Record<string, string>;\n  peerDependencies?: Record<string, string>;\n  pnpm?: {\n    overrides?: Record<string, string>;\n    patchedDependencies?: Record<string, string>;\n  };\n  overrides?: Record<string, string>;\n  resolutions?: Record<string, string>;\n  scripts?: Record<string, string>;\n}\n\nexport interface FrameworkOverrideFinding {\n  file: string;\n  field: string;\n  key: string;\n  value: string;\n}\n\nexport interface AgentNativeDepBump {\n  file: string;\n  section: \"dependencies\" | \"devDependencies\" | \"optionalDependencies\";\n  name: string;\n  from: string;\n  to: string;\n}\n\nexport interface UpgradeProject {\n  root: string;\n  kind: \"standalone\" | \"workspace\";\n  packageFiles: string[];\n}\n\nexport interface UpgradeDoctorReport {\n  project: UpgradeProject;\n  findings: FrameworkOverrideFinding[];\n  bumps: AgentNativeDepBump[];\n  installedCoreVersion: string | null;\n  cliCoreVersion: string | null;\n  scaffoldStaleHint: boolean;\n}\n\nexport interface UpgradeRunResult {\n  ok: boolean;\n  dryRun: boolean;\n  doctor: UpgradeDoctorReport;\n  steps: Array<{\n    id: string;\n    status: \"ok\" | \"skipped\" | \"failed\" | \"planned\";\n    detail?: string;\n  }>;\n  message: string;\n  exitCode: number;\n  codemod?: {\n    files: string[];\n    warnings: string[];\n    diff: string;\n  };\n}\n\nexport interface UpgradeIo {\n  log: (message: string) => void;\n  err: (message: string) => void;\n  spawn: (\n    command: string,\n    args: string[],\n    options: { cwd: string; stdio?: \"inherit\" | \"pipe\" },\n  ) => SpawnSyncReturns<string | Buffer>;\n  runSkillsUpdate: (cwd: string) => Promise<void>;\n}\n\nconst defaultIo: UpgradeIo = {\n  log: (message) => console.log(message),\n  err: (message) => console.error(message),\n  spawn: (command, args, options) =>\n    spawnSync(command, args, {\n      cwd: options.cwd,\n      stdio: options.stdio ?? \"inherit\",\n      encoding: \"utf-8\",\n      shell: process.platform === \"win32\",\n    }),\n  runSkillsUpdate: async (cwd) => {\n    const { runSkills } = await import(\"./skills.js\");\n    const previous = process.cwd();\n    process.chdir(cwd);\n    try {\n      await runSkills([\"update\", \"scaffold\", \"--project\"]);\n    } finally {\n      process.chdir(previous);\n    }\n  },\n};\n\nexport function parseUpgradeArgs(argv: string[]): UpgradeCliOptions {\n  const opts: UpgradeCliOptions = { command: \"run\" };\n  for (let i = 0; i < argv.length; i++) {\n    const arg = argv[i];\n    if (arg === \"check\" || arg === \"doctor\") {\n      opts.command = \"check\";\n    } else if (arg === \"help\" || arg === \"--help\" || arg === \"-h\") {\n      opts.command = \"help\";\n      opts.help = true;\n    } else if (arg === \"--dry-run\") {\n      opts.dryRun = true;\n    } else if (arg === \"--codemods\") {\n      opts.codemods = true;\n    } else if (arg === \"--yes\") {\n      opts.yes = true;\n    } else if (arg === \"--skip-install\") {\n      opts.skipInstall = true;\n    } else if (arg === \"--skip-verify\") {\n      opts.skipVerify = true;\n    } else if (arg === \"--skip-skills\") {\n      opts.skipSkills = true;\n    } else if (arg === \"--json\") {\n      opts.json = true;\n    } else if (arg === \"--force\") {\n      opts.force = true;\n    } else if (arg === \"--cwd\" && argv[i + 1]) {\n      opts.cwd = argv[++i];\n    } else if (arg.startsWith(\"--cwd=\")) {\n      opts.cwd = arg.slice(\"--cwd=\".length);\n    } else if (!arg.startsWith(\"-\")) {\n      // Ignore unknown positional for forward-compat; help covers usage.\n    }\n  }\n  return opts;\n}\n\nexport function printUpgradeHelp(io: Pick<UpgradeIo, \"log\"> = defaultIo): void {\n  io.log(\n    [\n      \"Usage:\",\n      \"  agent-native upgrade              Bring this app/workspace to current @agent-native/*\",\n      \"  agent-native upgrade check        Doctor only: overrides, patches, pending bumps\",\n      \"  agent-native upgrade --dry-run    Show the plan without writing or installing\",\n      \"  agent-native upgrade --codemods   Preview manifest-driven import migrations\",\n      \"\",\n      \"Options:\",\n      \"  --skip-install   Bump package.json only; do not run the package manager\",\n      \"  --codemods       Rewrite moved Agent Native imports and exports (preview by default)\",\n      \"  --yes            Apply codemods; without this flag --codemods is a dry run\",\n      \"  --skip-skills    Skip `skills update scaffold --project`\",\n      \"  --skip-verify    Skip typecheck after upgrade\",\n      \"  --force          Continue even when framework overrides/patches are present\",\n      \"  --json           Machine-readable report\",\n      \"  --cwd <dir>      Run against a project root other than the current directory\",\n      \"\",\n      \"On failure: report the error and stop. Do NOT add pnpm.overrides,\",\n      \"patchedDependencies, or local patches against @agent-native/* packages.\",\n      \"Do NOT edit node_modules/@agent-native/* or invent dispatch/core behavior\",\n      \"overrides. Revert those changes and re-run `agent-native upgrade`.\",\n    ].join(\"\\n\"),\n  );\n}\n\nfunction readJsonFile(filePath: string): PackageJsonLike | null {\n  try {\n    return JSON.parse(fs.readFileSync(filePath, \"utf-8\")) as PackageJsonLike;\n  } catch {\n    return null;\n  }\n}\n\nfunction writeJsonFile(filePath: string, value: PackageJsonLike): void {\n  fs.writeFileSync(filePath, `${JSON.stringify(value, null, 2)}\\n`);\n}\n\nexport function isAgentNativePackageName(name: string): boolean {\n  return name === \"@agent-native\" || name.startsWith(AGENT_NATIVE_SCOPE);\n}\n\nexport function isPinnedOrLocalVersion(version: string): boolean {\n  const v = version.trim();\n  return (\n    v.startsWith(\"file:\") ||\n    v.startsWith(\"link:\") ||\n    v.startsWith(\"workspace:\") ||\n    v.startsWith(\"portal:\") ||\n    v.startsWith(\"git+\") ||\n    v.startsWith(\"github:\") ||\n    v.startsWith(\"http:\") ||\n    v.startsWith(\"https:\")\n  );\n}\n\nexport function shouldBumpAgentNativeVersion(version: string): boolean {\n  if (isPinnedOrLocalVersion(version)) return false;\n  return version.trim() !== PINNABLE_VERSION;\n}\n\nfunction collectOverrideFindings(\n  file: string,\n  pkg: PackageJsonLike,\n): FrameworkOverrideFinding[] {\n  const findings: FrameworkOverrideFinding[] = [];\n  const tables: Array<{\n    field: string;\n    map: Record<string, string> | undefined;\n  }> = [\n    { field: \"pnpm.overrides\", map: pkg.pnpm?.overrides },\n    { field: \"pnpm.patchedDependencies\", map: pkg.pnpm?.patchedDependencies },\n    { field: \"overrides\", map: pkg.overrides },\n    { field: \"resolutions\", map: pkg.resolutions },\n  ];\n  for (const table of tables) {\n    if (!table.map) continue;\n    for (const [key, value] of Object.entries(table.map)) {\n      // Keys may be bare (`@agent-native/core`) or versioned\n      // (`@agent-native/core@1.2.3` for patchedDependencies).\n      if (key.includes(AGENT_NATIVE_SCOPE) || isAgentNativePackageName(key)) {\n        findings.push({ file, field: table.field, key, value: String(value) });\n      }\n    }\n  }\n  return findings;\n}\n\nfunction collectBumps(\n  file: string,\n  pkg: PackageJsonLike,\n): AgentNativeDepBump[] {\n  const bumps: AgentNativeDepBump[] = [];\n  const sections = [\n    \"dependencies\",\n    \"devDependencies\",\n    \"optionalDependencies\",\n  ] as const;\n  for (const section of sections) {\n    const deps = pkg[section];\n    if (!deps) continue;\n    for (const [name, version] of Object.entries(deps)) {\n      if (!isAgentNativePackageName(name)) continue;\n      if (!shouldBumpAgentNativeVersion(version)) continue;\n      bumps.push({\n        file,\n        section,\n        name,\n        from: version,\n        to: PINNABLE_VERSION,\n      });\n    }\n  }\n  return bumps;\n}\n\nfunction applyBumps(pkg: PackageJsonLike, bumps: AgentNativeDepBump[]): void {\n  for (const bump of bumps) {\n    const section = pkg[bump.section];\n    if (!section) continue;\n    if (section[bump.name] === bump.from) {\n      section[bump.name] = bump.to;\n    }\n  }\n}\n\nexport function detectUpgradeProject(cwd: string): UpgradeProject | null {\n  const start = path.resolve(cwd);\n  let dir = start;\n  while (true) {\n    const pkgPath = path.join(dir, \"package.json\");\n    if (fs.existsSync(pkgPath)) {\n      const pkg = readJsonFile(pkgPath);\n      const hasCore =\n        Boolean(pkg?.dependencies?.[\"@agent-native/core\"]) ||\n        Boolean(pkg?.devDependencies?.[\"@agent-native/core\"]);\n      const workspaceYaml = path.join(dir, \"pnpm-workspace.yaml\");\n      const isWorkspace = fs.existsSync(workspaceYaml);\n      if (hasCore || isWorkspace) {\n        const packageFiles = [pkgPath];\n        if (isWorkspace) {\n          packageFiles.push(...workspacePackageFiles(dir, workspaceYaml));\n        }\n        return {\n          root: dir,\n          kind: isWorkspace ? \"workspace\" : \"standalone\",\n          packageFiles: Array.from(new Set(packageFiles)),\n        };\n      }\n    }\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\nfunction workspacePackageFiles(root: string, workspaceYaml: string): string[] {\n  const patterns = parseWorkspacePackagePatterns(workspaceYaml);\n  const included = new Set<string>();\n  const excluded = new Set<string>();\n  for (const rawPattern of patterns) {\n    const exclude = rawPattern.startsWith(\"!\");\n    const pattern = exclude ? rawPattern.slice(1) : rawPattern;\n    const files = packageFilesForWorkspacePattern(root, pattern);\n    for (const file of files) {\n      if (exclude) excluded.add(file);\n      else included.add(file);\n    }\n  }\n  return Array.from(included)\n    .filter((file) => !excluded.has(file))\n    .sort();\n}\n\nfunction parseWorkspacePackagePatterns(workspaceYaml: string): string[] {\n  let text = \"\";\n  try {\n    text = fs.readFileSync(workspaceYaml, \"utf-8\");\n  } catch {\n    return [\"apps/*\", \"packages/*\"];\n  }\n  const patterns: string[] = [];\n  let inPackages = false;\n  for (const line of text.split(/\\r?\\n/)) {\n    const trimmed = line.trim();\n    if (!trimmed || trimmed.startsWith(\"#\")) continue;\n    if (/^[A-Za-z0-9_-]+:/.test(trimmed)) {\n      inPackages = trimmed === \"packages:\";\n      continue;\n    }\n    if (!inPackages || !trimmed.startsWith(\"-\")) continue;\n    const pattern = trimmed\n      .slice(1)\n      .trim()\n      .replace(/^['\"]|['\"]$/g, \"\");\n    if (pattern) patterns.push(pattern);\n  }\n  return patterns.length ? patterns : [\"apps/*\", \"packages/*\"];\n}\n\nfunction packageFilesForWorkspacePattern(\n  root: string,\n  pattern: string,\n): string[] {\n  const normalized = pattern.replace(/\\\\/g, \"/\").replace(/\\/+$/g, \"\");\n  if (!normalized || normalized.includes(\"node_modules\")) return [];\n  if (normalized.endsWith(\"/**\")) {\n    return collectPackageFilesRecursive(\n      path.join(root, normalized.slice(0, -3)),\n    );\n  }\n  if (normalized.endsWith(\"/*\")) {\n    const base = path.join(root, normalized.slice(0, -2));\n    if (!fs.existsSync(base)) return [];\n    return fs\n      .readdirSync(base, { withFileTypes: true })\n      .filter((entry) => entry.isDirectory())\n      .map((entry) => path.join(base, entry.name, \"package.json\"))\n      .filter((file) => fs.existsSync(file));\n  }\n  if (normalized.includes(\"*\")) {\n    return collectPackageFilesRecursive(\n      path.join(root, normalized.split(\"*\")[0]),\n    );\n  }\n  const file = path.join(root, normalized, \"package.json\");\n  return fs.existsSync(file) ? [file] : [];\n}\n\nfunction collectPackageFilesRecursive(dir: string): string[] {\n  if (!fs.existsSync(dir)) return [];\n  const files: string[] = [];\n  for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    if (entry.name === \"node_modules\" || entry.name === \".git\") continue;\n    const child = path.join(dir, entry.name);\n    const pkg = path.join(child, \"package.json\");\n    if (fs.existsSync(pkg)) files.push(pkg);\n    files.push(...collectPackageFilesRecursive(child));\n  }\n  return files;\n}\n\nfunction resolveInstalledPackageVersion(\n  projectRoot: string,\n  packageName: string,\n): string | null {\n  let dir = projectRoot;\n  while (true) {\n    const candidate = path.join(\n      dir,\n      \"node_modules\",\n      ...packageName.split(\"/\"),\n      \"package.json\",\n    );\n    if (fs.existsSync(candidate)) {\n      const pkg = readJsonFile(candidate);\n      return typeof pkg?.version === \"string\" ? pkg.version : null;\n    }\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\nfunction readCliCoreVersion(): string | null {\n  try {\n    const here = path.dirname(fileURLToPath(import.meta.url));\n    const pkgPath = path.resolve(here, \"../../package.json\");\n    const pkg = readJsonFile(pkgPath);\n    return typeof pkg?.version === \"string\" ? pkg.version : null;\n  } catch {\n    return null;\n  }\n}\n\nfunction detectPackageManager(projectRoot: string): \"pnpm\" | \"npm\" | \"yarn\" {\n  if (fs.existsSync(path.join(projectRoot, \"pnpm-lock.yaml\"))) return \"pnpm\";\n  if (fs.existsSync(path.join(projectRoot, \"yarn.lock\"))) return \"yarn\";\n  if (fs.existsSync(path.join(projectRoot, \"package-lock.json\"))) return \"npm\";\n  // Prefer pnpm for Agent Native scaffolds.\n  return \"pnpm\";\n}\n\nfunction installArgs(pm: \"pnpm\" | \"npm\" | \"yarn\"): string[] {\n  if (pm === \"npm\") return [\"install\"];\n  if (pm === \"yarn\") return [\"install\"];\n  return [\"install\"];\n}\n\nexport function buildUpgradeDoctorReport(\n  project: UpgradeProject,\n): UpgradeDoctorReport {\n  const findings: FrameworkOverrideFinding[] = [];\n  const bumps: AgentNativeDepBump[] = [];\n  for (const file of project.packageFiles) {\n    const pkg = readJsonFile(file);\n    if (!pkg) continue;\n    findings.push(...collectOverrideFindings(file, pkg));\n    bumps.push(...collectBumps(file, pkg));\n  }\n  const installedCoreVersion = resolveInstalledPackageVersion(\n    project.root,\n    \"@agent-native/core\",\n  );\n  const cliCoreVersion = readCliCoreVersion();\n  const skillsUpdateScript = project.packageFiles.some((file) => {\n    const pkg = readJsonFile(file);\n    return Boolean(pkg?.scripts?.[\"skills:update\"]);\n  });\n  return {\n    project,\n    findings,\n    bumps,\n    installedCoreVersion,\n    cliCoreVersion,\n    scaffoldStaleHint: skillsUpdateScript || bumps.length > 0,\n  };\n}\n\nfunction relativeTo(root: string, file: string): string {\n  const rel = path.relative(root, file);\n  return rel || \".\";\n}\n\nfunction formatDoctorHuman(report: UpgradeDoctorReport): string {\n  const lines: string[] = [];\n  lines.push(`Project: ${report.project.root} (${report.project.kind})`);\n  if (report.installedCoreVersion) {\n    lines.push(`Installed @agent-native/core: ${report.installedCoreVersion}`);\n  } else {\n    lines.push(\"Installed @agent-native/core: (not found in node_modules)\");\n  }\n  if (report.cliCoreVersion) {\n    lines.push(`CLI package version: ${report.cliCoreVersion}`);\n  }\n  if (report.findings.length === 0) {\n    lines.push(\"Framework overrides/patches: none\");\n  } else {\n    lines.push(\"Framework overrides/patches:\");\n    for (const finding of report.findings) {\n      lines.push(\n        `  - ${relativeTo(report.project.root, finding.file)} ${finding.field}[\"${finding.key}\"] = ${finding.value}`,\n      );\n    }\n  }\n  if (report.bumps.length === 0) {\n    lines.push(\"Pending @agent-native/* bumps: none\");\n  } else {\n    lines.push(\"Pending @agent-native/* bumps:\");\n    for (const bump of report.bumps) {\n      lines.push(\n        `  - ${relativeTo(report.project.root, bump.file)} ${bump.name}: ${bump.from} → ${bump.to}`,\n      );\n    }\n  }\n  return lines.join(\"\\n\");\n}\n\nconst FAILURE_GUIDANCE = [\n  \"Upgrade failed. Do not paper over this with framework patches.\",\n  \"Never add pnpm.overrides / patchedDependencies / resolutions for @agent-native/*.\",\n  \"Never edit node_modules/@agent-native/* or invent local dispatch/core behavior overrides.\",\n  \"Revert those changes if present, fix the app-level compile/runtime error, then re-run:\",\n  \"  npx @agent-native/core@latest upgrade\",\n].join(\"\\n\");\n\nexport async function runUpgrade(\n  argv: string[],\n  io: UpgradeIo = defaultIo,\n): Promise<number> {\n  const opts = parseUpgradeArgs(argv);\n  if (opts.help || opts.command === \"help\") {\n    printUpgradeHelp(io);\n    return 0;\n  }\n\n  const cwd = path.resolve(opts.cwd ?? process.cwd());\n  const project = detectUpgradeProject(cwd);\n  if (!project) {\n    const message =\n      \"No Agent Native app/workspace found. Run from an app or workspace root that depends on @agent-native/core.\";\n    if (opts.json) {\n      io.err(JSON.stringify({ ok: false, message }, null, 2));\n    } else {\n      io.err(message);\n    }\n    return 1;\n  }\n\n  const doctor = buildUpgradeDoctorReport(project);\n  if (opts.command === \"check\") {\n    if (opts.json) {\n      io.log(\n        JSON.stringify({ ok: doctor.findings.length === 0, doctor }, null, 2),\n      );\n    } else {\n      io.log(formatDoctorHuman(doctor));\n      if (doctor.findings.length > 0) {\n        io.err(\"\");\n        io.err(FAILURE_GUIDANCE);\n      }\n    }\n    return doctor.findings.length > 0 ? 1 : 0;\n  }\n\n  const dryRun = Boolean(opts.dryRun || (opts.codemods && !opts.yes));\n  const result: UpgradeRunResult = {\n    ok: true,\n    dryRun,\n    doctor,\n    steps: [],\n    message: \"\",\n    exitCode: 0,\n  };\n\n  if (doctor.findings.length > 0 && !opts.force) {\n    result.ok = false;\n    result.exitCode = 1;\n    result.message =\n      \"Blocked: framework overrides/patches for @agent-native/* are present. Remove them, then re-run upgrade (or pass --force to continue unsafely).\";\n    result.steps.push({\n      id: \"doctor\",\n      status: \"failed\",\n      detail: result.message,\n    });\n    if (opts.json) {\n      io.err(JSON.stringify(result, null, 2));\n    } else {\n      io.log(formatDoctorHuman(doctor));\n      io.err(\"\");\n      io.err(result.message);\n      io.err(\"\");\n      io.err(FAILURE_GUIDANCE);\n    }\n    return 1;\n  }\n\n  result.steps.push({\n    id: \"doctor\",\n    status: doctor.findings.length > 0 ? \"ok\" : \"ok\",\n    detail:\n      doctor.findings.length > 0\n        ? \"Continuing with --force despite framework overrides/patches\"\n        : \"No framework overrides/patches\",\n  });\n\n  // Apply package.json bumps.\n  if (doctor.bumps.length === 0) {\n    result.steps.push({\n      id: \"bump\",\n      status: \"skipped\",\n      detail: \"All @agent-native/* deps already use latest or local pins\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"bump\",\n      status: \"planned\",\n      detail: doctor.bumps\n        .map(\n          (b) =>\n            `${relativeTo(project.root, b.file)} ${b.name}: ${b.from} → ${b.to}`,\n        )\n        .join(\"; \"),\n    });\n  } else {\n    const byFile = new Map<string, AgentNativeDepBump[]>();\n    for (const bump of doctor.bumps) {\n      const list = byFile.get(bump.file) ?? [];\n      list.push(bump);\n      byFile.set(bump.file, list);\n    }\n    for (const [file, bumps] of byFile) {\n      const pkg = readJsonFile(file);\n      if (!pkg) continue;\n      applyBumps(pkg, bumps);\n      writeJsonFile(file, pkg);\n    }\n    result.steps.push({\n      id: \"bump\",\n      status: \"ok\",\n      detail: `Updated ${doctor.bumps.length} @agent-native/* dependency pin(s)`,\n    });\n  }\n\n  if (opts.codemods) {\n    const { formatMigrationCodemodDiff, runMigrationCodemods } =\n      await import(\"./migration-codemod.js\");\n    const codemodResult = runMigrationCodemods({\n      root: project.root,\n      apply: !dryRun,\n    });\n    const diff = formatMigrationCodemodDiff(codemodResult, project.root);\n    result.codemod = {\n      files: codemodResult.changes.map((change) =>\n        relativeTo(project.root, change.file),\n      ),\n      warnings: codemodResult.warnings,\n      diff,\n    };\n    result.steps.push({\n      id: \"codemods\",\n      status:\n        codemodResult.changes.length === 0\n          ? \"skipped\"\n          : dryRun\n            ? \"planned\"\n            : \"ok\",\n      detail:\n        codemodResult.changes.length === 0\n          ? \"No manifest migrations found\"\n          : `${dryRun ? \"Would update\" : \"Updated\"} ${codemodResult.changes.length} file(s)`,\n    });\n    if (!opts.json && diff) {\n      io.log(diff);\n      io.log(\"\");\n    }\n    if (!opts.json) {\n      for (const warning of codemodResult.warnings) {\n        io.err(`[codemods] ${warning}`);\n      }\n    }\n  }\n\n  // Install.\n  if (opts.skipInstall) {\n    result.steps.push({\n      id: \"install\",\n      status: \"skipped\",\n      detail: \"--skip-install\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"install\",\n      status: \"planned\",\n      detail: `${detectPackageManager(project.root)} install`,\n    });\n  } else {\n    const pm = detectPackageManager(project.root);\n    const spawned = io.spawn(pm, installArgs(pm), {\n      cwd: project.root,\n      stdio: opts.json ? \"pipe\" : \"inherit\",\n    });\n    if (spawned.status !== 0) {\n      result.ok = false;\n      result.exitCode = spawned.status ?? 1;\n      result.message = `${pm} install failed`;\n      result.steps.push({\n        id: \"install\",\n        status: \"failed\",\n        detail: result.message,\n      });\n      emitResult(io, opts, result);\n      return result.exitCode;\n    }\n    result.steps.push({ id: \"install\", status: \"ok\", detail: `${pm} install` });\n  }\n\n  // Skills refresh.\n  if (opts.skipSkills) {\n    result.steps.push({\n      id: \"skills\",\n      status: \"skipped\",\n      detail: \"--skip-skills\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"skills\",\n      status: \"planned\",\n      detail: \"skills update scaffold --project\",\n    });\n  } else {\n    try {\n      await io.runSkillsUpdate(project.root);\n      result.steps.push({\n        id: \"skills\",\n        status: \"ok\",\n        detail: \"skills update scaffold --project\",\n      });\n    } catch (err) {\n      result.ok = false;\n      result.exitCode = 1;\n      result.message = `skills update failed: ${err instanceof Error ? err.message : String(err)}`;\n      result.steps.push({\n        id: \"skills\",\n        status: \"failed\",\n        detail: result.message,\n      });\n      emitResult(io, opts, result);\n      return result.exitCode;\n    }\n  }\n\n  // Verify.\n  if (opts.skipVerify) {\n    result.steps.push({\n      id: \"verify\",\n      status: \"skipped\",\n      detail: \"--skip-verify\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"verify\",\n      status: \"planned\",\n      detail: \"typecheck (when available)\",\n    });\n  } else {\n    const rootPkg = readJsonFile(path.join(project.root, \"package.json\"));\n    const hasTypecheck = Boolean(rootPkg?.scripts?.typecheck);\n    if (!hasTypecheck) {\n      result.steps.push({\n        id: \"verify\",\n        status: \"skipped\",\n        detail: \"no typecheck script\",\n      });\n    } else {\n      const pm = detectPackageManager(project.root);\n      const args =\n        pm === \"npm\"\n          ? [\"run\", \"typecheck\"]\n          : pm === \"yarn\"\n            ? [\"typecheck\"]\n            : [\"typecheck\"];\n      const spawned = io.spawn(pm, args, {\n        cwd: project.root,\n        stdio: opts.json ? \"pipe\" : \"inherit\",\n      });\n      if (spawned.status !== 0) {\n        result.ok = false;\n        result.exitCode = spawned.status ?? 1;\n        result.message = \"typecheck failed\";\n        result.steps.push({\n          id: \"verify\",\n          status: \"failed\",\n          detail: result.message,\n        });\n        emitResult(io, opts, result);\n        return result.exitCode;\n      }\n      result.steps.push({ id: \"verify\", status: \"ok\", detail: \"typecheck\" });\n    }\n  }\n\n  result.message = dryRun\n    ? opts.codemods && !opts.yes\n      ? \"Codemod preview complete. Re-run with --codemods --yes to apply.\"\n      : \"Dry run complete. Re-run without --dry-run to apply.\"\n    : \"Upgrade complete. If the app still fails to run, fix app-level code — do not patch @agent-native/*.\";\n  emitResult(io, opts, result);\n  return 0;\n}\n\nfunction emitResult(\n  io: UpgradeIo,\n  opts: UpgradeCliOptions,\n  result: UpgradeRunResult,\n): void {\n  if (opts.json) {\n    const sink = result.ok ? io.log : io.err;\n    sink(JSON.stringify(result, null, 2));\n    return;\n  }\n  io.log(formatDoctorHuman(result.doctor));\n  io.log(\"\");\n  for (const step of result.steps) {\n    io.log(\n      `[${step.status}] ${step.id}${step.detail ? ` — ${step.detail}` : \"\"}`,\n    );\n  }\n  io.log(\"\");\n  if (result.ok) {\n    io.log(result.message);\n  } else {\n    io.err(result.message);\n    io.err(\"\");\n    io.err(FAILURE_GUIDANCE);\n  }\n}\n"]}
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* `agent-native upgrade` — bring an existing Agent Native app/workspace current.\n *\n * Older branches often break after a core bump. Agents then invent\n * `pnpm.overrides` / patches against `@agent-native/*` (especially dispatch),\n * which makes things worse. This command is the supported path:\n *\n *   1. Doctor: refuse or warn on framework overrides/patches\n *   2. Bump `@agent-native/*` deps to `latest` (unless file:/link:/workspace:)\n *   3. Install\n *   4. Refresh scaffold skills (`skills update scaffold --project`)\n *   5. Verify with typecheck when available\n *\n * On failure: print the error and stop. Do not patch framework packages.\n */\nimport { spawnSync, type SpawnSyncReturns } from \"node:child_process\";\nimport fs from \"node:fs\";\nimport path from \"node:path\";\nimport { fileURLToPath } from \"node:url\";\n\nimport type { MigrationCodemodResult } from \"./migration-codemod.js\";\n\nconst AGENT_NATIVE_SCOPE = \"@agent-native/\";\nconst PINNABLE_VERSION = \"latest\";\n\nexport type UpgradeCommand = \"run\" | \"check\" | \"help\";\n\nexport interface UpgradeCliOptions {\n  command: UpgradeCommand;\n  cwd?: string;\n  dryRun?: boolean;\n  codemods?: boolean;\n  yes?: boolean;\n  skipInstall?: boolean;\n  skipVerify?: boolean;\n  skipSkills?: boolean;\n  json?: boolean;\n  help?: boolean;\n  /** Force past doctor findings that would otherwise block (not recommended). */\n  force?: boolean;\n}\n\nexport interface PackageJsonLike {\n  name?: string;\n  version?: string;\n  dependencies?: Record<string, string>;\n  devDependencies?: Record<string, string>;\n  optionalDependencies?: Record<string, string>;\n  peerDependencies?: Record<string, string>;\n  pnpm?: {\n    overrides?: Record<string, string>;\n    patchedDependencies?: Record<string, string>;\n  };\n  overrides?: Record<string, string>;\n  resolutions?: Record<string, string>;\n  scripts?: Record<string, string>;\n}\n\nexport interface FrameworkOverrideFinding {\n  file: string;\n  field: string;\n  key: string;\n  value: string;\n}\n\nexport interface AgentNativeDepBump {\n  file: string;\n  section: \"dependencies\" | \"devDependencies\" | \"optionalDependencies\";\n  name: string;\n  from: string;\n  to: string;\n}\n\nexport interface UpgradeProject {\n  root: string;\n  kind: \"standalone\" | \"workspace\";\n  packageFiles: string[];\n}\n\nexport interface UpgradeDoctorReport {\n  project: UpgradeProject;\n  findings: FrameworkOverrideFinding[];\n  bumps: AgentNativeDepBump[];\n  installedCoreVersion: string | null;\n  cliCoreVersion: string | null;\n  scaffoldStaleHint: boolean;\n}\n\nexport interface UpgradeRunResult {\n  ok: boolean;\n  dryRun: boolean;\n  doctor: UpgradeDoctorReport;\n  steps: Array<{\n    id: string;\n    status: \"ok\" | \"skipped\" | \"failed\" | \"planned\";\n    detail?: string;\n  }>;\n  message: string;\n  exitCode: number;\n  codemod?: {\n    files: string[];\n    warnings: string[];\n    diff: string;\n  };\n}\n\nexport interface UpgradeIo {\n  log: (message: string) => void;\n  err: (message: string) => void;\n  spawn: (\n    command: string,\n    args: string[],\n    options: { cwd: string; stdio?: \"inherit\" | \"pipe\" },\n  ) => SpawnSyncReturns<string | Buffer>;\n  runSkillsUpdate: (cwd: string) => Promise<void>;\n}\n\nconst defaultIo: UpgradeIo = {\n  log: (message) => console.log(message),\n  err: (message) => console.error(message),\n  spawn: (command, args, options) =>\n    spawnSync(command, args, {\n      cwd: options.cwd,\n      stdio: options.stdio ?? \"inherit\",\n      encoding: \"utf-8\",\n      shell: process.platform === \"win32\",\n    }),\n  runSkillsUpdate: async (cwd) => {\n    const { runSkills } = await import(\"./skills.js\");\n    const previous = process.cwd();\n    process.chdir(cwd);\n    try {\n      await runSkills([\"update\", \"scaffold\", \"--project\"]);\n    } finally {\n      process.chdir(previous);\n    }\n  },\n};\n\nexport function parseUpgradeArgs(argv: string[]): UpgradeCliOptions {\n  const opts: UpgradeCliOptions = { command: \"run\" };\n  for (let i = 0; i < argv.length; i++) {\n    const arg = argv[i];\n    if (arg === \"check\" || arg === \"doctor\") {\n      opts.command = \"check\";\n    } else if (arg === \"help\" || arg === \"--help\" || arg === \"-h\") {\n      opts.command = \"help\";\n      opts.help = true;\n    } else if (arg === \"--dry-run\") {\n      opts.dryRun = true;\n    } else if (arg === \"--codemods\") {\n      opts.codemods = true;\n    } else if (arg === \"--yes\") {\n      opts.yes = true;\n    } else if (arg === \"--skip-install\") {\n      opts.skipInstall = true;\n    } else if (arg === \"--skip-verify\") {\n      opts.skipVerify = true;\n    } else if (arg === \"--skip-skills\") {\n      opts.skipSkills = true;\n    } else if (arg === \"--json\") {\n      opts.json = true;\n    } else if (arg === \"--force\") {\n      opts.force = true;\n    } else if (arg === \"--cwd\" && argv[i + 1]) {\n      opts.cwd = argv[++i];\n    } else if (arg.startsWith(\"--cwd=\")) {\n      opts.cwd = arg.slice(\"--cwd=\".length);\n    } else if (!arg.startsWith(\"-\")) {\n      // Ignore unknown positional for forward-compat; help covers usage.\n    }\n  }\n  return opts;\n}\n\nexport function printUpgradeHelp(io: Pick<UpgradeIo, \"log\"> = defaultIo): void {\n  io.log(\n    [\n      \"Usage:\",\n      \"  agent-native upgrade              Bring this app/workspace to current @agent-native/*\",\n      \"  agent-native upgrade check        Doctor only: overrides, patches, pending bumps\",\n      \"  agent-native upgrade --dry-run    Show the plan without writing or installing\",\n      \"  agent-native upgrade --codemods   Preview manifest-driven import migrations\",\n      \"\",\n      \"Options:\",\n      \"  --skip-install   Bump package.json only; do not run the package manager\",\n      \"  --codemods       Rewrite moved Agent Native imports and exports (preview by default)\",\n      \"  --yes            Apply codemods; without this flag --codemods is a dry run\",\n      \"  --skip-skills    Skip `skills update scaffold --project`\",\n      \"  --skip-verify    Skip typecheck after upgrade\",\n      \"  --force          Continue even when framework overrides/patches are present\",\n      \"  --json           Machine-readable report\",\n      \"  --cwd <dir>      Run against a project root other than the current directory\",\n      \"\",\n      \"On failure: report the error and stop. Do NOT add pnpm.overrides,\",\n      \"patchedDependencies, or local patches against @agent-native/* packages.\",\n      \"Do NOT edit node_modules/@agent-native/* or invent dispatch/core behavior\",\n      \"overrides. Revert those changes and re-run `agent-native upgrade`.\",\n    ].join(\"\\n\"),\n  );\n}\n\nfunction readJsonFile(filePath: string): PackageJsonLike | null {\n  try {\n    return JSON.parse(fs.readFileSync(filePath, \"utf-8\")) as PackageJsonLike;\n  } catch {\n    return null;\n  }\n}\n\nfunction writeJsonFile(filePath: string, value: PackageJsonLike): void {\n  fs.writeFileSync(filePath, `${JSON.stringify(value, null, 2)}\\n`);\n}\n\nexport function isAgentNativePackageName(name: string): boolean {\n  return name === \"@agent-native\" || name.startsWith(AGENT_NATIVE_SCOPE);\n}\n\nexport function isPinnedOrLocalVersion(version: string): boolean {\n  const v = version.trim();\n  return (\n    v.startsWith(\"file:\") ||\n    v.startsWith(\"link:\") ||\n    v.startsWith(\"workspace:\") ||\n    v.startsWith(\"portal:\") ||\n    v.startsWith(\"git+\") ||\n    v.startsWith(\"github:\") ||\n    v.startsWith(\"http:\") ||\n    v.startsWith(\"https:\")\n  );\n}\n\nexport function shouldBumpAgentNativeVersion(version: string): boolean {\n  if (isPinnedOrLocalVersion(version)) return false;\n  return version.trim() !== PINNABLE_VERSION;\n}\n\nfunction collectOverrideFindings(\n  file: string,\n  pkg: PackageJsonLike,\n): FrameworkOverrideFinding[] {\n  const findings: FrameworkOverrideFinding[] = [];\n  const tables: Array<{\n    field: string;\n    map: Record<string, string> | undefined;\n  }> = [\n    { field: \"pnpm.overrides\", map: pkg.pnpm?.overrides },\n    { field: \"pnpm.patchedDependencies\", map: pkg.pnpm?.patchedDependencies },\n    { field: \"overrides\", map: pkg.overrides },\n    { field: \"resolutions\", map: pkg.resolutions },\n  ];\n  for (const table of tables) {\n    if (!table.map) continue;\n    for (const [key, value] of Object.entries(table.map)) {\n      // Keys may be bare (`@agent-native/core`) or versioned\n      // (`@agent-native/core@1.2.3` for patchedDependencies).\n      if (key.includes(AGENT_NATIVE_SCOPE) || isAgentNativePackageName(key)) {\n        findings.push({ file, field: table.field, key, value: String(value) });\n      }\n    }\n  }\n  return findings;\n}\n\nfunction collectBumps(\n  file: string,\n  pkg: PackageJsonLike,\n): AgentNativeDepBump[] {\n  const bumps: AgentNativeDepBump[] = [];\n  const sections = [\n    \"dependencies\",\n    \"devDependencies\",\n    \"optionalDependencies\",\n  ] as const;\n  for (const section of sections) {\n    const deps = pkg[section];\n    if (!deps) continue;\n    for (const [name, version] of Object.entries(deps)) {\n      if (!isAgentNativePackageName(name)) continue;\n      if (!shouldBumpAgentNativeVersion(version)) continue;\n      bumps.push({\n        file,\n        section,\n        name,\n        from: version,\n        to: PINNABLE_VERSION,\n      });\n    }\n  }\n  return bumps;\n}\n\nfunction applyBumps(pkg: PackageJsonLike, bumps: AgentNativeDepBump[]): void {\n  for (const bump of bumps) {\n    const section = pkg[bump.section];\n    if (!section) continue;\n    if (section[bump.name] === bump.from) {\n      section[bump.name] = bump.to;\n    }\n  }\n}\n\nexport function detectUpgradeProject(cwd: string): UpgradeProject | null {\n  const start = path.resolve(cwd);\n  let dir = start;\n  while (true) {\n    const pkgPath = path.join(dir, \"package.json\");\n    if (fs.existsSync(pkgPath)) {\n      const pkg = readJsonFile(pkgPath);\n      const hasCore =\n        Boolean(pkg?.dependencies?.[\"@agent-native/core\"]) ||\n        Boolean(pkg?.devDependencies?.[\"@agent-native/core\"]);\n      const workspaceYaml = path.join(dir, \"pnpm-workspace.yaml\");\n      const isWorkspace = fs.existsSync(workspaceYaml);\n      if (hasCore || isWorkspace) {\n        const packageFiles = [pkgPath];\n        if (isWorkspace) {\n          packageFiles.push(...workspacePackageFiles(dir, workspaceYaml));\n        }\n        return {\n          root: dir,\n          kind: isWorkspace ? \"workspace\" : \"standalone\",\n          packageFiles: Array.from(new Set(packageFiles)),\n        };\n      }\n    }\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\nfunction workspacePackageFiles(root: string, workspaceYaml: string): string[] {\n  const patterns = parseWorkspacePackagePatterns(workspaceYaml);\n  const included = new Set<string>();\n  const excluded = new Set<string>();\n  for (const rawPattern of patterns) {\n    const exclude = rawPattern.startsWith(\"!\");\n    const pattern = exclude ? rawPattern.slice(1) : rawPattern;\n    const files = packageFilesForWorkspacePattern(root, pattern);\n    for (const file of files) {\n      if (exclude) excluded.add(file);\n      else included.add(file);\n    }\n  }\n  return Array.from(included)\n    .filter((file) => !excluded.has(file))\n    .sort();\n}\n\nfunction parseWorkspacePackagePatterns(workspaceYaml: string): string[] {\n  let text = \"\";\n  try {\n    text = fs.readFileSync(workspaceYaml, \"utf-8\");\n  } catch {\n    return [\"apps/*\", \"packages/*\"];\n  }\n  const patterns: string[] = [];\n  let inPackages = false;\n  for (const line of text.split(/\\r?\\n/)) {\n    const trimmed = line.trim();\n    if (!trimmed || trimmed.startsWith(\"#\")) continue;\n    if (/^[A-Za-z0-9_-]+:/.test(trimmed)) {\n      inPackages = trimmed === \"packages:\";\n      continue;\n    }\n    if (!inPackages || !trimmed.startsWith(\"-\")) continue;\n    const pattern = trimmed\n      .slice(1)\n      .trim()\n      .replace(/^['\"]|['\"]$/g, \"\");\n    if (pattern) patterns.push(pattern);\n  }\n  return patterns.length ? patterns : [\"apps/*\", \"packages/*\"];\n}\n\nfunction packageFilesForWorkspacePattern(\n  root: string,\n  pattern: string,\n): string[] {\n  const normalized = pattern.replace(/\\\\/g, \"/\").replace(/\\/+$/g, \"\");\n  if (!normalized || normalized.includes(\"node_modules\")) return [];\n  if (normalized.endsWith(\"/**\")) {\n    return collectPackageFilesRecursive(\n      path.join(root, normalized.slice(0, -3)),\n    );\n  }\n  if (normalized.endsWith(\"/*\")) {\n    const base = path.join(root, normalized.slice(0, -2));\n    if (!fs.existsSync(base)) return [];\n    return fs\n      .readdirSync(base, { withFileTypes: true })\n      .filter((entry) => entry.isDirectory())\n      .map((entry) => path.join(base, entry.name, \"package.json\"))\n      .filter((file) => fs.existsSync(file));\n  }\n  if (normalized.includes(\"*\")) {\n    return collectPackageFilesRecursive(\n      path.join(root, normalized.split(\"*\")[0]),\n    );\n  }\n  const file = path.join(root, normalized, \"package.json\");\n  return fs.existsSync(file) ? [file] : [];\n}\n\nfunction collectPackageFilesRecursive(dir: string): string[] {\n  if (!fs.existsSync(dir)) return [];\n  const files: string[] = [];\n  for (const entry of fs.readdirSync(dir, { withFileTypes: true })) {\n    if (!entry.isDirectory()) continue;\n    if (entry.name === \"node_modules\" || entry.name === \".git\") continue;\n    const child = path.join(dir, entry.name);\n    const pkg = path.join(child, \"package.json\");\n    if (fs.existsSync(pkg)) files.push(pkg);\n    files.push(...collectPackageFilesRecursive(child));\n  }\n  return files;\n}\n\nfunction resolveInstalledPackageVersion(\n  projectRoot: string,\n  packageName: string,\n): string | null {\n  let dir = projectRoot;\n  while (true) {\n    const candidate = path.join(\n      dir,\n      \"node_modules\",\n      ...packageName.split(\"/\"),\n      \"package.json\",\n    );\n    if (fs.existsSync(candidate)) {\n      const pkg = readJsonFile(candidate);\n      return typeof pkg?.version === \"string\" ? pkg.version : null;\n    }\n    const parent = path.dirname(dir);\n    if (parent === dir) break;\n    dir = parent;\n  }\n  return null;\n}\n\nfunction readCliCoreVersion(): string | null {\n  try {\n    const here = path.dirname(fileURLToPath(import.meta.url));\n    const pkgPath = path.resolve(here, \"../../package.json\");\n    const pkg = readJsonFile(pkgPath);\n    return typeof pkg?.version === \"string\" ? pkg.version : null;\n  } catch {\n    return null;\n  }\n}\n\nfunction detectPackageManager(projectRoot: string): \"pnpm\" | \"npm\" | \"yarn\" {\n  if (fs.existsSync(path.join(projectRoot, \"pnpm-lock.yaml\"))) return \"pnpm\";\n  if (fs.existsSync(path.join(projectRoot, \"yarn.lock\"))) return \"yarn\";\n  if (fs.existsSync(path.join(projectRoot, \"package-lock.json\"))) return \"npm\";\n  // Prefer pnpm for Agent Native scaffolds.\n  return \"pnpm\";\n}\n\nfunction installArgs(pm: \"pnpm\" | \"npm\" | \"yarn\"): string[] {\n  if (pm === \"npm\") return [\"install\"];\n  if (pm === \"yarn\") return [\"install\"];\n  return [\"install\"];\n}\n\nexport function buildUpgradeDoctorReport(\n  project: UpgradeProject,\n): UpgradeDoctorReport {\n  const findings: FrameworkOverrideFinding[] = [];\n  const bumps: AgentNativeDepBump[] = [];\n  for (const file of project.packageFiles) {\n    const pkg = readJsonFile(file);\n    if (!pkg) continue;\n    findings.push(...collectOverrideFindings(file, pkg));\n    bumps.push(...collectBumps(file, pkg));\n  }\n  const installedCoreVersion = resolveInstalledPackageVersion(\n    project.root,\n    \"@agent-native/core\",\n  );\n  const cliCoreVersion = readCliCoreVersion();\n  const skillsUpdateScript = project.packageFiles.some((file) => {\n    const pkg = readJsonFile(file);\n    return Boolean(pkg?.scripts?.[\"skills:update\"]);\n  });\n  return {\n    project,\n    findings,\n    bumps,\n    installedCoreVersion,\n    cliCoreVersion,\n    scaffoldStaleHint: skillsUpdateScript || bumps.length > 0,\n  };\n}\n\nfunction relativeTo(root: string, file: string): string {\n  const rel = path.relative(root, file);\n  return rel || \".\";\n}\n\nfunction formatDoctorHuman(report: UpgradeDoctorReport): string {\n  const lines: string[] = [];\n  lines.push(`Project: ${report.project.root} (${report.project.kind})`);\n  if (report.installedCoreVersion) {\n    lines.push(`Installed @agent-native/core: ${report.installedCoreVersion}`);\n  } else {\n    lines.push(\"Installed @agent-native/core: (not found in node_modules)\");\n  }\n  if (report.cliCoreVersion) {\n    lines.push(`CLI package version: ${report.cliCoreVersion}`);\n  }\n  if (report.findings.length === 0) {\n    lines.push(\"Framework overrides/patches: none\");\n  } else {\n    lines.push(\"Framework overrides/patches:\");\n    for (const finding of report.findings) {\n      lines.push(\n        `  - ${relativeTo(report.project.root, finding.file)} ${finding.field}[\"${finding.key}\"] = ${finding.value}`,\n      );\n    }\n  }\n  if (report.bumps.length === 0) {\n    lines.push(\"Pending @agent-native/* bumps: none\");\n  } else {\n    lines.push(\"Pending @agent-native/* bumps:\");\n    for (const bump of report.bumps) {\n      lines.push(\n        `  - ${relativeTo(report.project.root, bump.file)} ${bump.name}: ${bump.from} → ${bump.to}`,\n      );\n    }\n  }\n  return lines.join(\"\\n\");\n}\n\nconst FAILURE_GUIDANCE = [\n  \"Upgrade failed. Do not paper over this with framework patches.\",\n  \"Never add pnpm.overrides / patchedDependencies / resolutions for @agent-native/*.\",\n  \"Never edit node_modules/@agent-native/* or invent local dispatch/core behavior overrides.\",\n  \"Revert those changes if present, fix the app-level compile/runtime error, then re-run:\",\n  \"  npx @agent-native/core@latest upgrade\",\n].join(\"\\n\");\n\nfunction applyCodemodDependencyPlan(\n  codemodResult: MigrationCodemodResult,\n): MigrationCodemodResult[\"changes\"] {\n  const dependencyFiles = new Set(codemodResult.dependencyFiles);\n  const applied: MigrationCodemodResult[\"changes\"] = [];\n  for (const change of codemodResult.changes) {\n    if (!dependencyFiles.has(change.file)) continue;\n    fs.writeFileSync(change.file, change.after);\n    applied.push(change);\n  }\n  return applied;\n}\n\nexport async function runUpgrade(\n  argv: string[],\n  io: UpgradeIo = defaultIo,\n): Promise<number> {\n  const opts = parseUpgradeArgs(argv);\n  if (opts.help || opts.command === \"help\") {\n    printUpgradeHelp(io);\n    return 0;\n  }\n\n  const cwd = path.resolve(opts.cwd ?? process.cwd());\n  const project = detectUpgradeProject(cwd);\n  if (!project) {\n    const message =\n      \"No Agent Native app/workspace found. Run from an app or workspace root that depends on @agent-native/core.\";\n    if (opts.json) {\n      io.err(JSON.stringify({ ok: false, message }, null, 2));\n    } else {\n      io.err(message);\n    }\n    return 1;\n  }\n\n  const doctor = buildUpgradeDoctorReport(project);\n  if (opts.command === \"check\") {\n    if (opts.json) {\n      io.log(\n        JSON.stringify({ ok: doctor.findings.length === 0, doctor }, null, 2),\n      );\n    } else {\n      io.log(formatDoctorHuman(doctor));\n      if (doctor.findings.length > 0) {\n        io.err(\"\");\n        io.err(FAILURE_GUIDANCE);\n      }\n    }\n    return doctor.findings.length > 0 ? 1 : 0;\n  }\n\n  const dryRun = Boolean(opts.dryRun || (opts.codemods && !opts.yes));\n  const result: UpgradeRunResult = {\n    ok: true,\n    dryRun,\n    doctor,\n    steps: [],\n    message: \"\",\n    exitCode: 0,\n  };\n\n  if (doctor.findings.length > 0 && !opts.force) {\n    result.ok = false;\n    result.exitCode = 1;\n    result.message =\n      \"Blocked: framework overrides/patches for @agent-native/* are present. Remove them, then re-run upgrade (or pass --force to continue unsafely).\";\n    result.steps.push({\n      id: \"doctor\",\n      status: \"failed\",\n      detail: result.message,\n    });\n    if (opts.json) {\n      io.err(JSON.stringify(result, null, 2));\n    } else {\n      io.log(formatDoctorHuman(doctor));\n      io.err(\"\");\n      io.err(result.message);\n      io.err(\"\");\n      io.err(FAILURE_GUIDANCE);\n    }\n    return 1;\n  }\n\n  result.steps.push({\n    id: \"doctor\",\n    status: doctor.findings.length > 0 ? \"ok\" : \"ok\",\n    detail:\n      doctor.findings.length > 0\n        ? \"Continuing with --force despite framework overrides/patches\"\n        : \"No framework overrides/patches\",\n  });\n\n  // Apply package.json bumps.\n  if (doctor.bumps.length === 0) {\n    result.steps.push({\n      id: \"bump\",\n      status: \"skipped\",\n      detail: \"All @agent-native/* deps already use latest or local pins\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"bump\",\n      status: \"planned\",\n      detail: doctor.bumps\n        .map(\n          (b) =>\n            `${relativeTo(project.root, b.file)} ${b.name}: ${b.from} → ${b.to}`,\n        )\n        .join(\"; \"),\n    });\n  } else {\n    const byFile = new Map<string, AgentNativeDepBump[]>();\n    for (const bump of doctor.bumps) {\n      const list = byFile.get(bump.file) ?? [];\n      list.push(bump);\n      byFile.set(bump.file, list);\n    }\n    for (const [file, bumps] of byFile) {\n      const pkg = readJsonFile(file);\n      if (!pkg) continue;\n      applyBumps(pkg, bumps);\n      writeJsonFile(file, pkg);\n    }\n    result.steps.push({\n      id: \"bump\",\n      status: \"ok\",\n      detail: `Updated ${doctor.bumps.length} @agent-native/* dependency pin(s)`,\n    });\n  }\n\n  let codemodPlan:\n    | {\n        module: typeof import(\"./migration-codemod.js\");\n        dependencyChanges: MigrationCodemodResult[\"changes\"];\n      }\n    | undefined;\n\n  if (opts.codemods) {\n    const codemodModule = await import(\"./migration-codemod.js\");\n    const codemodResult = codemodModule.runMigrationCodemods({\n      root: project.root,\n      targetExists: codemodModule.createMigrationPlanningTargetResolver(\n        project.root,\n      ),\n    });\n    const diff = codemodModule.formatMigrationCodemodDiff(\n      codemodResult,\n      project.root,\n    );\n    const dependencyChanges = dryRun\n      ? []\n      : applyCodemodDependencyPlan(codemodResult);\n    codemodPlan = {\n      module: codemodModule,\n      dependencyChanges,\n    };\n\n    if (dryRun) {\n      result.codemod = {\n        files: codemodResult.changes.map((change) =>\n          relativeTo(project.root, change.file),\n        ),\n        warnings: codemodResult.warnings,\n        diff,\n      };\n    }\n    if (dryRun) {\n      result.steps.push({\n        id: \"codemods\",\n        status: codemodResult.changes.length === 0 ? \"skipped\" : \"planned\",\n        detail:\n          codemodResult.changes.length === 0\n            ? \"No manifest migrations found\"\n            : `Would update ${codemodResult.changes.length} file(s)`,\n      });\n    }\n    if (dryRun && !opts.json && diff) {\n      io.log(diff);\n      io.log(\"\");\n    }\n    if (dryRun && !opts.json) {\n      for (const warning of codemodResult.warnings) {\n        io.err(`[codemods] ${warning}`);\n      }\n    }\n  }\n\n  // Install.\n  if (opts.skipInstall) {\n    result.steps.push({\n      id: \"install\",\n      status: \"skipped\",\n      detail: \"--skip-install\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"install\",\n      status: \"planned\",\n      detail: `${detectPackageManager(project.root)} install`,\n    });\n  } else {\n    const pm = detectPackageManager(project.root);\n    const spawned = io.spawn(pm, installArgs(pm), {\n      cwd: project.root,\n      stdio: opts.json ? \"pipe\" : \"inherit\",\n    });\n    if (spawned.status !== 0) {\n      result.ok = false;\n      result.exitCode = spawned.status ?? 1;\n      result.message = `${pm} install failed`;\n      if (codemodPlan && codemodPlan.dependencyChanges.length > 0) {\n        const dependencyResult: MigrationCodemodResult = {\n          changes: codemodPlan.dependencyChanges,\n          dependencyFiles: codemodPlan.dependencyChanges.map(\n            (change) => change.file,\n          ),\n          warnings: [],\n        };\n        const diff = codemodPlan.module.formatMigrationCodemodDiff(\n          dependencyResult,\n          project.root,\n        );\n        result.codemod = {\n          files: dependencyResult.changes.map((change) =>\n            relativeTo(project.root, change.file),\n          ),\n          warnings: [],\n          diff,\n        };\n        if (!opts.json && diff) {\n          io.log(diff);\n          io.log(\"\");\n        }\n      }\n      result.steps.push({\n        id: \"install\",\n        status: \"failed\",\n        detail: result.message,\n      });\n      emitResult(io, opts, result);\n      return result.exitCode;\n    }\n    result.steps.push({ id: \"install\", status: \"ok\", detail: `${pm} install` });\n  }\n\n  if (codemodPlan && !dryRun) {\n    const applied = codemodPlan.module.runMigrationCodemods({\n      root: project.root,\n      apply: true,\n    });\n    const actualResult: MigrationCodemodResult = {\n      changes: [...codemodPlan.dependencyChanges, ...applied.changes],\n      dependencyFiles: codemodPlan.dependencyChanges.map(\n        (change) => change.file,\n      ),\n      warnings: applied.warnings,\n    };\n    const diff = codemodPlan.module.formatMigrationCodemodDiff(\n      actualResult,\n      project.root,\n    );\n    const files = [\n      ...new Set(actualResult.changes.map((change) => change.file)),\n    ];\n    result.codemod = {\n      files: files.map((file) => relativeTo(project.root, file)),\n      warnings: actualResult.warnings,\n      diff,\n    };\n    result.steps.push({\n      id: \"codemods\",\n      status: files.length === 0 ? \"skipped\" : \"ok\",\n      detail:\n        files.length === 0\n          ? \"No resolvable manifest migrations found\"\n          : opts.skipInstall\n            ? `Updated ${files.length} file(s) without installing dependencies`\n            : `Updated ${files.length} file(s) after dependency installation`,\n    });\n    if (!opts.json && diff) {\n      io.log(diff);\n      io.log(\"\");\n    }\n    if (!opts.json) {\n      for (const warning of actualResult.warnings) {\n        io.err(`[codemods] ${warning}`);\n      }\n    }\n  }\n\n  // Skills refresh.\n  if (opts.skipSkills) {\n    result.steps.push({\n      id: \"skills\",\n      status: \"skipped\",\n      detail: \"--skip-skills\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"skills\",\n      status: \"planned\",\n      detail: \"skills update scaffold --project\",\n    });\n  } else {\n    try {\n      await io.runSkillsUpdate(project.root);\n      result.steps.push({\n        id: \"skills\",\n        status: \"ok\",\n        detail: \"skills update scaffold --project\",\n      });\n    } catch (err) {\n      result.ok = false;\n      result.exitCode = 1;\n      result.message = `skills update failed: ${err instanceof Error ? err.message : String(err)}`;\n      result.steps.push({\n        id: \"skills\",\n        status: \"failed\",\n        detail: result.message,\n      });\n      emitResult(io, opts, result);\n      return result.exitCode;\n    }\n  }\n\n  // Verify.\n  if (opts.skipVerify) {\n    result.steps.push({\n      id: \"verify\",\n      status: \"skipped\",\n      detail: \"--skip-verify\",\n    });\n  } else if (dryRun) {\n    result.steps.push({\n      id: \"verify\",\n      status: \"planned\",\n      detail: \"typecheck (when available)\",\n    });\n  } else {\n    const rootPkg = readJsonFile(path.join(project.root, \"package.json\"));\n    const hasTypecheck = Boolean(rootPkg?.scripts?.typecheck);\n    if (!hasTypecheck) {\n      result.steps.push({\n        id: \"verify\",\n        status: \"skipped\",\n        detail: \"no typecheck script\",\n      });\n    } else {\n      const pm = detectPackageManager(project.root);\n      const args =\n        pm === \"npm\"\n          ? [\"run\", \"typecheck\"]\n          : pm === \"yarn\"\n            ? [\"typecheck\"]\n            : [\"typecheck\"];\n      const spawned = io.spawn(pm, args, {\n        cwd: project.root,\n        stdio: opts.json ? \"pipe\" : \"inherit\",\n      });\n      if (spawned.status !== 0) {\n        result.ok = false;\n        result.exitCode = spawned.status ?? 1;\n        result.message = \"typecheck failed\";\n        result.steps.push({\n          id: \"verify\",\n          status: \"failed\",\n          detail: result.message,\n        });\n        emitResult(io, opts, result);\n        return result.exitCode;\n      }\n      result.steps.push({ id: \"verify\", status: \"ok\", detail: \"typecheck\" });\n    }\n  }\n\n  result.message = dryRun\n    ? opts.codemods && !opts.yes\n      ? \"Codemod preview complete. Re-run with --codemods --yes to apply.\"\n      : \"Dry run complete. Re-run without --dry-run to apply.\"\n    : \"Upgrade complete. If the app still fails to run, fix app-level code — do not patch @agent-native/*.\";\n  emitResult(io, opts, result);\n  return 0;\n}\n\nfunction emitResult(\n  io: UpgradeIo,\n  opts: UpgradeCliOptions,\n  result: UpgradeRunResult,\n): void {\n  if (opts.json) {\n    const sink = result.ok ? io.log : io.err;\n    sink(JSON.stringify(result, null, 2));\n    return;\n  }\n  io.log(formatDoctorHuman(result.doctor));\n  io.log(\"\");\n  for (const step of result.steps) {\n    io.log(\n      `[${step.status}] ${step.id}${step.detail ? ` — ${step.detail}` : \"\"}`,\n    );\n  }\n  io.log(\"\");\n  if (result.ok) {\n    io.log(result.message);\n  } else {\n    io.err(result.message);\n    io.err(\"\");\n    io.err(FAILURE_GUIDANCE);\n  }\n}\n"]}

package/dist/collab/routes.d.ts

@@ -26,8 +26,8 @@ export declare const getCollabState: import("h3").EventHandlerWithFetch<import("
  * Body: { update: string (base64), requestSource?: string }
  */
 export declare const postCollabUpdate: import("h3").EventHandlerWithFetch<import("h3").EventHandlerRequest, Promise<{
-    ok?: undefined;
     error: string;
+    ok?: undefined;
 } | {
     error?: undefined;
     ok: boolean;

package/dist/notifications/routes.d.ts

@@ -13,13 +13,13 @@
 export declare function createNotificationsHandler(): import("h3").EventHandlerWithFetch<import("h3").EventHandlerRequest, Promise<"" | import("./types.js").Notification[] | {
     count: number;
     updated?: undefined;
-    error?: undefined;
     ok?: undefined;
+    error?: undefined;
 } | {
     count?: undefined;
     updated: number;
-    error?: undefined;
     ok?: undefined;
+    error?: undefined;
 } | {
     count?: undefined;
     updated?: undefined;
@@ -28,7 +28,7 @@ export declare function createNotificationsHandler(): import("h3").EventHandlerW
 } | {
     count?: undefined;
     updated?: undefined;
-    error?: undefined;
     ok: boolean;
+    error?: undefined;
 }>>;
 //# sourceMappingURL=routes.d.ts.map

package/dist/observability/routes.d.ts

@@ -62,7 +62,7 @@ export declare function createObservabilityHandler(): import("h3").EventHandlerW
     summary?: undefined;
     spans?: undefined;
     id?: undefined;
-    error?: undefined;
     ok: boolean;
+    error?: undefined;
 }>>;
 //# sourceMappingURL=routes.d.ts.map

package/dist/secrets/routes.d.ts

@@ -37,17 +37,17 @@ export declare function createWriteSecretHandler(): import("h3").EventHandlerWit
     ok?: undefined;
     status?: undefined;
 } | {
+    error?: undefined;
     ok: boolean;
     status: string;
-    error?: undefined;
 } | {
     ok?: undefined;
     error: string;
     removed?: undefined;
 } | {
+    error?: undefined;
     ok: boolean;
     removed: boolean;
-    error?: undefined;
 }>>;
 /**
  * POST /_agent-native/secrets/:key/test — re-run the validator against the
@@ -58,13 +58,13 @@ export declare function createTestSecretHandler(): import("h3").EventHandlerWith
     error: string;
     note?: undefined;
 } | {
+    error?: undefined;
     ok: boolean;
     note?: undefined;
-    error?: undefined;
 } | {
+    error?: undefined;
     ok: boolean;
     note: string;
-    error?: undefined;
 } | {
     note?: undefined;
     ok: boolean;
@@ -95,12 +95,12 @@ export interface AdHocSecretPayload {
 export declare function createAdHocSecretHandler(): import("h3").EventHandlerWithFetch<import("h3").EventHandlerRequest, Promise<AdHocSecretPayload[] | {
     error: string;
 } | {
+    error?: undefined;
     ok: boolean;
     key: string;
-    error?: undefined;
 } | {
+    error?: undefined;
     ok: boolean;
     removed: boolean;
-    error?: undefined;
 }>>;
 //# sourceMappingURL=routes.d.ts.map

package/dist/server/agent-engine-api-key-route.d.ts

@@ -27,11 +27,11 @@ export declare function resolveAgentEngineApiKeyWriteTarget(event: H3Event, scop
 export declare function createAgentEngineApiKeyHandler(): import("h3").EventHandlerWithFetch<import("h3").EventHandlerRequest, Promise<{
     error: any;
 } | {
-    error?: undefined;
     ok: boolean;
     key: string;
     baseUrlKey?: string;
     scope: AgentEngineApiKeyScope;
+    error?: undefined;
 }>>;
 export {};
 //# sourceMappingURL=agent-engine-api-key-route.d.ts.map

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@agent-native/core",
-  "version": "0.111.2",
+  "version": "0.111.3",
   "description": "Framework for agent-native application development — where AI agents and UI share SQL state, actions, and context",
   "homepage": "https://github.com/BuilderIO/agent-native#readme",
   "bugs": {