@aexol/spectral 0.7.1 → 0.7.5

package/dist/pi/coding-agent/core/resource-loader.js

@@ -0,0 +1,733 @@
+import { existsSync, readdirSync, readFileSync, statSync } from "node:fs";
+import { join, resolve, sep } from "node:path";
+import chalk from "chalk";
+import { CONFIG_DIR_NAME } from "../config.js";
+import { loadThemeFromPath } from "../modes/interactive/theme/theme.js";
+import { canonicalizePath, isLocalPath, resolvePath } from "../utils/paths.js";
+import { createEventBus } from "./event-bus.js";
+import { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from "./extensions/loader.js";
+import { DefaultPackageManager } from "./package-manager.js";
+import { loadPromptTemplates } from "./prompt-templates.js";
+import { SettingsManager } from "./settings-manager.js";
+import { loadSkills } from "./skills.js";
+import { createSourceInfo } from "./source-info.js";
+function resolvePromptInput(input, description) {
+    if (!input) {
+        return undefined;
+    }
+    if (existsSync(input)) {
+        try {
+            return readFileSync(input, "utf-8");
+        }
+        catch (error) {
+            console.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));
+            return input;
+        }
+    }
+    return input;
+}
+function loadContextFileFromDir(dir) {
+    const candidates = ["AGENTS.md", "AGENTS.MD", "CLAUDE.md", "CLAUDE.MD"];
+    for (const filename of candidates) {
+        const filePath = join(dir, filename);
+        if (existsSync(filePath)) {
+            try {
+                return {
+                    path: filePath,
+                    content: readFileSync(filePath, "utf-8"),
+                };
+            }
+            catch (error) {
+                console.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));
+            }
+        }
+    }
+    return null;
+}
+export function loadProjectContextFiles(options) {
+    const resolvedCwd = resolvePath(options.cwd);
+    const resolvedAgentDir = resolvePath(options.agentDir);
+    const contextFiles = [];
+    const seenPaths = new Set();
+    const globalContext = loadContextFileFromDir(resolvedAgentDir);
+    if (globalContext) {
+        contextFiles.push(globalContext);
+        seenPaths.add(globalContext.path);
+    }
+    const ancestorContextFiles = [];
+    let currentDir = resolvedCwd;
+    const root = resolve("/");
+    while (true) {
+        const contextFile = loadContextFileFromDir(currentDir);
+        if (contextFile && !seenPaths.has(contextFile.path)) {
+            ancestorContextFiles.unshift(contextFile);
+            seenPaths.add(contextFile.path);
+        }
+        if (currentDir === root)
+            break;
+        const parentDir = resolve(currentDir, "..");
+        if (parentDir === currentDir)
+            break;
+        currentDir = parentDir;
+    }
+    contextFiles.push(...ancestorContextFiles);
+    return contextFiles;
+}
+export class DefaultResourceLoader {
+    cwd;
+    agentDir;
+    settingsManager;
+    eventBus;
+    packageManager;
+    additionalExtensionPaths;
+    additionalSkillPaths;
+    additionalPromptTemplatePaths;
+    additionalThemePaths;
+    extensionFactories;
+    noExtensions;
+    noSkills;
+    noPromptTemplates;
+    noThemes;
+    noContextFiles;
+    systemPromptSource;
+    appendSystemPromptSource;
+    extensionsOverride;
+    skillsOverride;
+    promptsOverride;
+    themesOverride;
+    agentsFilesOverride;
+    systemPromptOverride;
+    appendSystemPromptOverride;
+    extensionsResult;
+    skills;
+    skillDiagnostics;
+    prompts;
+    promptDiagnostics;
+    themes;
+    themeDiagnostics;
+    agentsFiles;
+    systemPrompt;
+    appendSystemPrompt;
+    lastSkillPaths;
+    extensionSkillSourceInfos;
+    extensionPromptSourceInfos;
+    extensionThemeSourceInfos;
+    lastPromptPaths;
+    lastThemePaths;
+    constructor(options) {
+        this.cwd = resolvePath(options.cwd);
+        this.agentDir = resolvePath(options.agentDir);
+        this.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);
+        this.eventBus = options.eventBus ?? createEventBus();
+        this.packageManager = new DefaultPackageManager({
+            cwd: this.cwd,
+            agentDir: this.agentDir,
+            settingsManager: this.settingsManager,
+        });
+        this.additionalExtensionPaths = options.additionalExtensionPaths ?? [];
+        this.additionalSkillPaths = options.additionalSkillPaths ?? [];
+        this.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];
+        this.additionalThemePaths = options.additionalThemePaths ?? [];
+        this.extensionFactories = options.extensionFactories ?? [];
+        this.noExtensions = options.noExtensions ?? false;
+        this.noSkills = options.noSkills ?? false;
+        this.noPromptTemplates = options.noPromptTemplates ?? false;
+        this.noThemes = options.noThemes ?? false;
+        this.noContextFiles = options.noContextFiles ?? false;
+        this.systemPromptSource = options.systemPrompt;
+        this.appendSystemPromptSource = options.appendSystemPrompt;
+        this.extensionsOverride = options.extensionsOverride;
+        this.skillsOverride = options.skillsOverride;
+        this.promptsOverride = options.promptsOverride;
+        this.themesOverride = options.themesOverride;
+        this.agentsFilesOverride = options.agentsFilesOverride;
+        this.systemPromptOverride = options.systemPromptOverride;
+        this.appendSystemPromptOverride = options.appendSystemPromptOverride;
+        this.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };
+        this.skills = [];
+        this.skillDiagnostics = [];
+        this.prompts = [];
+        this.promptDiagnostics = [];
+        this.themes = [];
+        this.themeDiagnostics = [];
+        this.agentsFiles = [];
+        this.appendSystemPrompt = [];
+        this.lastSkillPaths = [];
+        this.extensionSkillSourceInfos = new Map();
+        this.extensionPromptSourceInfos = new Map();
+        this.extensionThemeSourceInfos = new Map();
+        this.lastPromptPaths = [];
+        this.lastThemePaths = [];
+    }
+    getExtensions() {
+        return this.extensionsResult;
+    }
+    getSkills() {
+        return { skills: this.skills, diagnostics: this.skillDiagnostics };
+    }
+    getPrompts() {
+        return { prompts: this.prompts, diagnostics: this.promptDiagnostics };
+    }
+    getThemes() {
+        return { themes: this.themes, diagnostics: this.themeDiagnostics };
+    }
+    getAgentsFiles() {
+        return { agentsFiles: this.agentsFiles };
+    }
+    getSystemPrompt() {
+        return this.systemPrompt;
+    }
+    getAppendSystemPrompt() {
+        return this.appendSystemPrompt;
+    }
+    extendResources(paths) {
+        const skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);
+        const promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);
+        const themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);
+        for (const entry of skillPaths) {
+            this.extensionSkillSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));
+        }
+        for (const entry of promptPaths) {
+            this.extensionPromptSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));
+        }
+        for (const entry of themePaths) {
+            this.extensionThemeSourceInfos.set(entry.path, createSourceInfo(entry.path, entry.metadata));
+        }
+        if (skillPaths.length > 0) {
+            this.lastSkillPaths = this.mergePaths(this.lastSkillPaths, skillPaths.map((entry) => entry.path));
+            this.updateSkillsFromPaths(this.lastSkillPaths);
+        }
+        if (promptPaths.length > 0) {
+            this.lastPromptPaths = this.mergePaths(this.lastPromptPaths, promptPaths.map((entry) => entry.path));
+            this.updatePromptsFromPaths(this.lastPromptPaths);
+        }
+        if (themePaths.length > 0) {
+            this.lastThemePaths = this.mergePaths(this.lastThemePaths, themePaths.map((entry) => entry.path));
+            this.updateThemesFromPaths(this.lastThemePaths);
+        }
+    }
+    async reload() {
+        await this.settingsManager.reload();
+        const resolvedPaths = await this.packageManager.resolve();
+        const cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {
+            temporary: true,
+        });
+        const metadataByPath = new Map();
+        this.extensionSkillSourceInfos = new Map();
+        this.extensionPromptSourceInfos = new Map();
+        this.extensionThemeSourceInfos = new Map();
+        // Helper to extract enabled paths and store metadata
+        const getEnabledResources = (resources) => {
+            for (const r of resources) {
+                if (!metadataByPath.has(r.path)) {
+                    metadataByPath.set(r.path, r.metadata);
+                }
+            }
+            return resources.filter((r) => r.enabled);
+        };
+        const getEnabledPaths = (resources) => getEnabledResources(resources).map((r) => r.path);
+        const enabledExtensions = getEnabledPaths(resolvedPaths.extensions);
+        const enabledSkillResources = getEnabledResources(resolvedPaths.skills);
+        const enabledPrompts = getEnabledPaths(resolvedPaths.prompts);
+        const enabledThemes = getEnabledPaths(resolvedPaths.themes);
+        const mapSkillPath = (resource) => {
+            if (resource.metadata.source !== "auto" && resource.metadata.origin !== "package") {
+                return resource.path;
+            }
+            try {
+                const stats = statSync(resource.path);
+                if (!stats.isDirectory()) {
+                    return resource.path;
+                }
+            }
+            catch {
+                return resource.path;
+            }
+            const skillFile = join(resource.path, "SKILL.md");
+            if (existsSync(skillFile)) {
+                if (!metadataByPath.has(skillFile)) {
+                    metadataByPath.set(skillFile, resource.metadata);
+                }
+                return skillFile;
+            }
+            return resource.path;
+        };
+        const enabledSkills = enabledSkillResources.map(mapSkillPath);
+        // Add CLI paths metadata
+        for (const r of cliExtensionPaths.extensions) {
+            if (!metadataByPath.has(r.path)) {
+                metadataByPath.set(r.path, { source: "cli", scope: "temporary", origin: "top-level" });
+            }
+        }
+        for (const r of cliExtensionPaths.skills) {
+            if (!metadataByPath.has(r.path)) {
+                metadataByPath.set(r.path, { source: "cli", scope: "temporary", origin: "top-level" });
+            }
+        }
+        const cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);
+        const cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);
+        const cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);
+        const cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);
+        const extensionPaths = this.noExtensions
+            ? cliEnabledExtensions
+            : this.mergePaths(cliEnabledExtensions, enabledExtensions);
+        const extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);
+        const inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);
+        extensionsResult.extensions.push(...inlineExtensions.extensions);
+        extensionsResult.errors.push(...inlineExtensions.errors);
+        // Detect extension conflicts (tools, commands, flags with same names from different extensions)
+        // Keep all extensions loaded. Conflicts are reported as diagnostics, and precedence is handled by load order.
+        const conflicts = this.detectExtensionConflicts(extensionsResult.extensions);
+        for (const conflict of conflicts) {
+            extensionsResult.errors.push({ path: conflict.path, error: conflict.message });
+        }
+        for (const p of this.additionalExtensionPaths) {
+            if (isLocalPath(p)) {
+                const resolved = this.resolveResourcePath(p);
+                if (!existsSync(resolved)) {
+                    extensionsResult.errors.push({ path: resolved, error: `Extension path does not exist: ${resolved}` });
+                }
+            }
+        }
+        this.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;
+        this.applyExtensionSourceInfo(this.extensionsResult.extensions, metadataByPath);
+        const skillPaths = this.noSkills
+            ? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)
+            : this.mergePaths([...cliEnabledSkills, ...enabledSkills], this.additionalSkillPaths);
+        this.lastSkillPaths = skillPaths;
+        this.updateSkillsFromPaths(skillPaths, metadataByPath);
+        for (const p of this.additionalSkillPaths) {
+            if (isLocalPath(p)) {
+                const resolved = this.resolveResourcePath(p);
+                if (!existsSync(resolved) && !this.skillDiagnostics.some((d) => d.path === resolved)) {
+                    this.skillDiagnostics.push({ type: "error", message: "Skill path does not exist", path: resolved });
+                }
+            }
+        }
+        const promptPaths = this.noPromptTemplates
+            ? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)
+            : this.mergePaths([...cliEnabledPrompts, ...enabledPrompts], this.additionalPromptTemplatePaths);
+        this.lastPromptPaths = promptPaths;
+        this.updatePromptsFromPaths(promptPaths, metadataByPath);
+        for (const p of this.additionalPromptTemplatePaths) {
+            if (isLocalPath(p)) {
+                const resolved = this.resolveResourcePath(p);
+                if (!existsSync(resolved) && !this.promptDiagnostics.some((d) => d.path === resolved)) {
+                    this.promptDiagnostics.push({
+                        type: "error",
+                        message: "Prompt template path does not exist",
+                        path: resolved,
+                    });
+                }
+            }
+        }
+        const themePaths = this.noThemes
+            ? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)
+            : this.mergePaths([...cliEnabledThemes, ...enabledThemes], this.additionalThemePaths);
+        this.lastThemePaths = themePaths;
+        this.updateThemesFromPaths(themePaths, metadataByPath);
+        for (const p of this.additionalThemePaths) {
+            const resolved = this.resolveResourcePath(p);
+            if (!existsSync(resolved) && !this.themeDiagnostics.some((d) => d.path === resolved)) {
+                this.themeDiagnostics.push({ type: "error", message: "Theme path does not exist", path: resolved });
+            }
+        }
+        const agentsFiles = {
+            agentsFiles: this.noContextFiles ? [] : loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }),
+        };
+        const resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;
+        this.agentsFiles = resolvedAgentsFiles.agentsFiles;
+        const baseSystemPrompt = resolvePromptInput(this.systemPromptSource ?? this.discoverSystemPromptFile(), "system prompt");
+        this.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;
+        const appendSources = this.appendSystemPromptSource ??
+            (this.discoverAppendSystemPromptFile() ? [this.discoverAppendSystemPromptFile()] : []);
+        const baseAppend = appendSources
+            .map((s) => resolvePromptInput(s, "append system prompt"))
+            .filter((s) => s !== undefined);
+        this.appendSystemPrompt = this.appendSystemPromptOverride
+            ? this.appendSystemPromptOverride(baseAppend)
+            : baseAppend;
+    }
+    normalizeExtensionPaths(entries) {
+        return entries.map((entry) => {
+            const metadata = entry.metadata.baseDir
+                ? { ...entry.metadata, baseDir: this.resolveResourcePath(entry.metadata.baseDir) }
+                : entry.metadata;
+            return {
+                path: this.resolveResourcePath(entry.path),
+                metadata,
+            };
+        });
+    }
+    updateSkillsFromPaths(skillPaths, metadataByPath) {
+        let skillsResult;
+        if (this.noSkills && skillPaths.length === 0) {
+            skillsResult = { skills: [], diagnostics: [] };
+        }
+        else {
+            skillsResult = loadSkills({
+                cwd: this.cwd,
+                agentDir: this.agentDir,
+                skillPaths,
+                includeDefaults: false,
+            });
+        }
+        const resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;
+        this.skills = resolvedSkills.skills.map((skill) => ({
+            ...skill,
+            sourceInfo: this.findSourceInfoForPath(skill.filePath, this.extensionSkillSourceInfos, metadataByPath) ??
+                skill.sourceInfo ??
+                this.getDefaultSourceInfoForPath(skill.filePath),
+        }));
+        this.skillDiagnostics = resolvedSkills.diagnostics;
+    }
+    updatePromptsFromPaths(promptPaths, metadataByPath) {
+        let promptsResult;
+        if (this.noPromptTemplates && promptPaths.length === 0) {
+            promptsResult = { prompts: [], diagnostics: [] };
+        }
+        else {
+            const allPrompts = loadPromptTemplates({
+                cwd: this.cwd,
+                agentDir: this.agentDir,
+                promptPaths,
+                includeDefaults: false,
+            });
+            promptsResult = this.dedupePrompts(allPrompts);
+        }
+        const resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;
+        this.prompts = resolvedPrompts.prompts.map((prompt) => ({
+            ...prompt,
+            sourceInfo: this.findSourceInfoForPath(prompt.filePath, this.extensionPromptSourceInfos, metadataByPath) ??
+                prompt.sourceInfo ??
+                this.getDefaultSourceInfoForPath(prompt.filePath),
+        }));
+        this.promptDiagnostics = resolvedPrompts.diagnostics;
+    }
+    updateThemesFromPaths(themePaths, metadataByPath) {
+        let themesResult;
+        if (this.noThemes && themePaths.length === 0) {
+            themesResult = { themes: [], diagnostics: [] };
+        }
+        else {
+            const loaded = this.loadThemes(themePaths, false);
+            const deduped = this.dedupeThemes(loaded.themes);
+            themesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };
+        }
+        const resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;
+        this.themes = resolvedThemes.themes.map((theme) => {
+            const sourcePath = theme.sourcePath;
+            theme.sourceInfo = sourcePath
+                ? (this.findSourceInfoForPath(sourcePath, this.extensionThemeSourceInfos, metadataByPath) ??
+                    theme.sourceInfo ??
+                    this.getDefaultSourceInfoForPath(sourcePath))
+                : theme.sourceInfo;
+            return theme;
+        });
+        this.themeDiagnostics = resolvedThemes.diagnostics;
+    }
+    applyExtensionSourceInfo(extensions, metadataByPath) {
+        for (const extension of extensions) {
+            extension.sourceInfo =
+                this.findSourceInfoForPath(extension.path, undefined, metadataByPath) ??
+                    this.getDefaultSourceInfoForPath(extension.path);
+            for (const command of extension.commands.values()) {
+                command.sourceInfo = extension.sourceInfo;
+            }
+            for (const tool of extension.tools.values()) {
+                tool.sourceInfo = extension.sourceInfo;
+            }
+        }
+    }
+    findSourceInfoForPath(resourcePath, extraSourceInfos, metadataByPath) {
+        if (!resourcePath) {
+            return undefined;
+        }
+        if (resourcePath.startsWith("<")) {
+            return this.getDefaultSourceInfoForPath(resourcePath);
+        }
+        const normalizedResourcePath = resolve(resourcePath);
+        if (extraSourceInfos) {
+            for (const [sourcePath, sourceInfo] of extraSourceInfos.entries()) {
+                const normalizedSourcePath = resolve(sourcePath);
+                if (normalizedResourcePath === normalizedSourcePath ||
+                    normalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)) {
+                    return { ...sourceInfo, path: resourcePath };
+                }
+            }
+        }
+        if (metadataByPath) {
+            const exact = metadataByPath.get(normalizedResourcePath) ?? metadataByPath.get(resourcePath);
+            if (exact) {
+                return createSourceInfo(resourcePath, exact);
+            }
+            for (const [sourcePath, metadata] of metadataByPath.entries()) {
+                const normalizedSourcePath = resolve(sourcePath);
+                if (normalizedResourcePath === normalizedSourcePath ||
+                    normalizedResourcePath.startsWith(`${normalizedSourcePath}${sep}`)) {
+                    return createSourceInfo(resourcePath, metadata);
+                }
+            }
+        }
+        return undefined;
+    }
+    getDefaultSourceInfoForPath(filePath) {
+        if (filePath.startsWith("<") && filePath.endsWith(">")) {
+            return {
+                path: filePath,
+                source: filePath.slice(1, -1).split(":")[0] || "temporary",
+                scope: "temporary",
+                origin: "top-level",
+            };
+        }
+        const normalizedPath = resolve(filePath);
+        const agentRoots = [
+            join(this.agentDir, "skills"),
+            join(this.agentDir, "prompts"),
+            join(this.agentDir, "themes"),
+            join(this.agentDir, "extensions"),
+        ];
+        const projectRoots = [
+            join(this.cwd, CONFIG_DIR_NAME, "skills"),
+            join(this.cwd, CONFIG_DIR_NAME, "prompts"),
+            join(this.cwd, CONFIG_DIR_NAME, "themes"),
+            join(this.cwd, CONFIG_DIR_NAME, "extensions"),
+        ];
+        for (const root of agentRoots) {
+            if (this.isUnderPath(normalizedPath, root)) {
+                return { path: filePath, source: "local", scope: "user", origin: "top-level", baseDir: root };
+            }
+        }
+        for (const root of projectRoots) {
+            if (this.isUnderPath(normalizedPath, root)) {
+                return { path: filePath, source: "local", scope: "project", origin: "top-level", baseDir: root };
+            }
+        }
+        return {
+            path: filePath,
+            source: "local",
+            scope: "temporary",
+            origin: "top-level",
+            baseDir: statSync(normalizedPath).isDirectory() ? normalizedPath : resolve(normalizedPath, ".."),
+        };
+    }
+    mergePaths(primary, additional) {
+        const merged = [];
+        const seen = new Set();
+        for (const p of [...primary, ...additional]) {
+            const resolved = this.resolveResourcePath(p);
+            const canonicalPath = canonicalizePath(resolved);
+            if (seen.has(canonicalPath))
+                continue;
+            seen.add(canonicalPath);
+            merged.push(resolved);
+        }
+        return merged;
+    }
+    resolveResourcePath(p) {
+        return resolvePath(p, this.cwd, { trim: true });
+    }
+    loadThemes(paths, includeDefaults = true) {
+        const themes = [];
+        const diagnostics = [];
+        if (includeDefaults) {
+            const defaultDirs = [join(this.agentDir, "themes"), join(this.cwd, CONFIG_DIR_NAME, "themes")];
+            for (const dir of defaultDirs) {
+                this.loadThemesFromDir(dir, themes, diagnostics);
+            }
+        }
+        for (const p of paths) {
+            const resolved = this.resolveResourcePath(p);
+            if (!existsSync(resolved)) {
+                diagnostics.push({ type: "warning", message: "theme path does not exist", path: resolved });
+                continue;
+            }
+            try {
+                const stats = statSync(resolved);
+                if (stats.isDirectory()) {
+                    this.loadThemesFromDir(resolved, themes, diagnostics);
+                }
+                else if (stats.isFile() && resolved.endsWith(".json")) {
+                    this.loadThemeFromFile(resolved, themes, diagnostics);
+                }
+                else {
+                    diagnostics.push({ type: "warning", message: "theme path is not a json file", path: resolved });
+                }
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : "failed to read theme path";
+                diagnostics.push({ type: "warning", message, path: resolved });
+            }
+        }
+        return { themes, diagnostics };
+    }
+    loadThemesFromDir(dir, themes, diagnostics) {
+        if (!existsSync(dir)) {
+            return;
+        }
+        try {
+            const entries = readdirSync(dir, { withFileTypes: true });
+            for (const entry of entries) {
+                let isFile = entry.isFile();
+                if (entry.isSymbolicLink()) {
+                    try {
+                        isFile = statSync(join(dir, entry.name)).isFile();
+                    }
+                    catch {
+                        continue;
+                    }
+                }
+                if (!isFile) {
+                    continue;
+                }
+                if (!entry.name.endsWith(".json")) {
+                    continue;
+                }
+                this.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);
+            }
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : "failed to read theme directory";
+            diagnostics.push({ type: "warning", message, path: dir });
+        }
+    }
+    loadThemeFromFile(filePath, themes, diagnostics) {
+        try {
+            themes.push(loadThemeFromPath(filePath));
+        }
+        catch (error) {
+            const message = error instanceof Error ? error.message : "failed to load theme";
+            diagnostics.push({ type: "warning", message, path: filePath });
+        }
+    }
+    async loadExtensionFactories(runtime) {
+        const extensions = [];
+        const errors = [];
+        for (const [index, factory] of this.extensionFactories.entries()) {
+            const extensionPath = `<inline:${index + 1}>`;
+            try {
+                const extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);
+                extensions.push(extension);
+            }
+            catch (error) {
+                const message = error instanceof Error ? error.message : "failed to load extension";
+                errors.push({ path: extensionPath, error: message });
+            }
+        }
+        return { extensions, errors };
+    }
+    dedupePrompts(prompts) {
+        const seen = new Map();
+        const diagnostics = [];
+        for (const prompt of prompts) {
+            const existing = seen.get(prompt.name);
+            if (existing) {
+                diagnostics.push({
+                    type: "collision",
+                    message: `name "/${prompt.name}" collision`,
+                    path: prompt.filePath,
+                    collision: {
+                        resourceType: "prompt",
+                        name: prompt.name,
+                        winnerPath: existing.filePath,
+                        loserPath: prompt.filePath,
+                    },
+                });
+            }
+            else {
+                seen.set(prompt.name, prompt);
+            }
+        }
+        return { prompts: Array.from(seen.values()), diagnostics };
+    }
+    dedupeThemes(themes) {
+        const seen = new Map();
+        const diagnostics = [];
+        for (const t of themes) {
+            const name = t.name ?? "unnamed";
+            const existing = seen.get(name);
+            if (existing) {
+                diagnostics.push({
+                    type: "collision",
+                    message: `name "${name}" collision`,
+                    path: t.sourcePath,
+                    collision: {
+                        resourceType: "theme",
+                        name,
+                        winnerPath: existing.sourcePath ?? "<builtin>",
+                        loserPath: t.sourcePath ?? "<builtin>",
+                    },
+                });
+            }
+            else {
+                seen.set(name, t);
+            }
+        }
+        return { themes: Array.from(seen.values()), diagnostics };
+    }
+    discoverSystemPromptFile() {
+        const projectPath = join(this.cwd, CONFIG_DIR_NAME, "SYSTEM.md");
+        if (existsSync(projectPath)) {
+            return projectPath;
+        }
+        const globalPath = join(this.agentDir, "SYSTEM.md");
+        if (existsSync(globalPath)) {
+            return globalPath;
+        }
+        return undefined;
+    }
+    discoverAppendSystemPromptFile() {
+        const projectPath = join(this.cwd, CONFIG_DIR_NAME, "APPEND_SYSTEM.md");
+        if (existsSync(projectPath)) {
+            return projectPath;
+        }
+        const globalPath = join(this.agentDir, "APPEND_SYSTEM.md");
+        if (existsSync(globalPath)) {
+            return globalPath;
+        }
+        return undefined;
+    }
+    isUnderPath(target, root) {
+        const normalizedRoot = resolve(root);
+        if (target === normalizedRoot) {
+            return true;
+        }
+        const prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;
+        return target.startsWith(prefix);
+    }
+    detectExtensionConflicts(extensions) {
+        const conflicts = [];
+        // Track which extension registered each tool and flag
+        const toolOwners = new Map();
+        const flagOwners = new Map();
+        for (const ext of extensions) {
+            // Check tools
+            for (const toolName of ext.tools.keys()) {
+                const existingOwner = toolOwners.get(toolName);
+                if (existingOwner && existingOwner !== ext.path) {
+                    conflicts.push({
+                        path: ext.path,
+                        message: `Tool "${toolName}" conflicts with ${existingOwner}`,
+                    });
+                }
+                else {
+                    toolOwners.set(toolName, ext.path);
+                }
+            }
+            // Check flags
+            for (const flagName of ext.flags.keys()) {
+                const existingOwner = flagOwners.get(flagName);
+                if (existingOwner && existingOwner !== ext.path) {
+                    conflicts.push({
+                        path: ext.path,
+                        message: `Flag "--${flagName}" conflicts with ${existingOwner}`,
+                    });
+                }
+                else {
+                    flagOwners.set(flagName, ext.path);
+                }
+            }
+        }
+        return conflicts;
+    }
+}