@aehrc/smart-forms-renderer 1.0.0-alpha.42.dev2 → 1.0.0-alpha.42.dev3

package/src/stories/assets/questionnaires/QBehaviorCalculations.ts

@@ -1,643 +0,0 @@
-/*
- * Copyright 2024 Commonwealth Scientific and Industrial Research
- * Organisation (CSIRO) ABN 41 687 119 230.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *     http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-import type { Questionnaire } from 'fhir/r4';
-
-export const qLaunchContext: Questionnaire = {
-  resourceType: 'Questionnaire',
-  id: 'LaunchContext',
-  name: 'LaunchContext',
-  title: 'Launch Context',
-  version: '0.1.0',
-  status: 'draft',
-  publisher: 'AEHRC CSIRO',
-  date: '2024-05-01',
-  url: 'https://smartforms.csiro.au/docs/behavior/calculations/launch-context',
-  item: [
-    {
-      linkId: 'launch-context-instructions',
-      _text: {
-        extension: [
-          {
-            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
-            valueString:
-              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Form Population</strong> section for the usage of launch context.</p></div>'
-          }
-        ]
-      },
-      text: 'Please refer to the Form Population section for the usage of launch context.',
-      type: 'display',
-      repeats: false
-    }
-  ]
-};
-
-export const qVariable: Questionnaire = {
-  resourceType: 'Questionnaire',
-  id: 'Variable',
-  name: 'Variable',
-  title: 'Variable',
-  version: '0.1.0',
-  status: 'draft',
-  publisher: 'AEHRC CSIRO',
-  date: '2024-05-01',
-  url: 'https://smartforms.csiro.au/docs/behavior/calculations/variable',
-  item: [
-    {
-      linkId: 'variables-instructions',
-      _text: {
-        extension: [
-          {
-            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
-            valueString:
-              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Calculated Expression</strong> examples above or the <strong>Form Population</strong> section for the usage of variables.</p></div>'
-          }
-        ]
-      },
-      text: 'Please refer to the Calculated Expression examples above or the Form Population section for the usage of variables.',
-      type: 'display',
-      repeats: false
-    }
-  ]
-};
-
-export const qInitialExpression: Questionnaire = {
-  resourceType: 'Questionnaire',
-  id: 'InitialExpression',
-  name: 'InitialExpression',
-  title: 'Initial Expression',
-  version: '0.1.0',
-  status: 'draft',
-  publisher: 'AEHRC CSIRO',
-  date: '2024-05-01',
-  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/initial-expression',
-  item: [
-    {
-      linkId: 'initial-expression-instructions',
-      _text: {
-        extension: [
-          {
-            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
-            valueString:
-              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Form Population</strong> section for the usage of initial expressions.</p></div>'
-          }
-        ]
-      },
-      text: 'Please refer to the Form Population section for the usage of initial expressions.',
-      type: 'display',
-      repeats: false
-    }
-  ]
-};
-
-export const qCalculatedExpressionBMICalculator: Questionnaire = {
-  resourceType: 'Questionnaire',
-  id: 'CalculatedExpressionBMICalculator',
-  name: 'CalculatedExpressionBMICalculator',
-  title: 'Calculated Expression BMI Calculator',
-  version: '0.1.0',
-  status: 'draft',
-  publisher: 'AEHRC CSIRO',
-  date: '2024-05-01',
-  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/calculated-expression-1',
-  item: [
-    {
-      linkId: 'bmi-calculation',
-      text: 'BMI Calculation',
-      type: 'group',
-      repeats: false,
-      extension: [
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'height',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='patient-height').answer.value"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'weight',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='patient-weight').answer.value"
-          }
-        }
-      ],
-      item: [
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'cm',
-                display: 'cm'
-              }
-            }
-          ],
-          linkId: 'patient-height',
-          text: 'Height',
-          type: 'decimal',
-          repeats: false,
-          readOnly: false
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'kg',
-                display: 'kg'
-              }
-            }
-          ],
-          linkId: 'patient-weight',
-          text: 'Weight',
-          type: 'decimal',
-          repeats: false,
-          readOnly: false
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-calculatedExpression',
-              valueExpression: {
-                description: 'BMI calculation',
-                language: 'text/fhirpath',
-                expression: '(%weight/((%height/100).power(2))).round(1)'
-              }
-            },
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'kg/m2',
-                display: 'kg/m2'
-              }
-            }
-          ],
-          linkId: 'bmi-result',
-          text: 'Value',
-          type: 'decimal',
-          repeats: false,
-          readOnly: true
-        }
-      ]
-    }
-  ]
-};
-
-export const qCalculatedExpressionCvdRiskCalculator: Questionnaire = {
-  resourceType: 'Questionnaire',
-  id: 'CalculatedExpressionCvdRiskCalculator',
-  name: 'CalculatedExpressionCvdRiskCalculator',
-  title: 'Calculated Expression CVD Risk Calculator',
-  version: '0.1.0',
-  status: 'draft',
-  publisher: 'AEHRC CSIRO',
-  date: '2024-05-01',
-  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/calculated-expression-2',
-  item: [
-    {
-      extension: [
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'female',
-            language: 'text/fhirpath',
-            expression: "iif(item.where(linkId='gender').answer.value.code='female', 1, 0)"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'age',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='patient-age').answer.value"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cvdAge',
-            language: 'text/fhirpath',
-            expression: 'iif(%age > 74, 74, iif(%age < 35, 35, %age))'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'systolicBP',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='systolic-blood-pressure').answer.value"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'smoker',
-            language: 'text/fhirpath',
-            expression:
-              "iif(item.where(linkId='smoking-status').answer.value.code='77176002', 1, 0)"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'totalCh',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='total-cholesterol').answer.value"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'hdl',
-            language: 'text/fhirpath',
-            expression: "item.where(linkId='hdl-cholesterol').answer.value"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'diabetes',
-            language: 'text/fhirpath',
-            expression: "iif(item.where(linkId='has-diabetes').answer.value = true,1,0)"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'ecgLvh',
-            language: 'text/fhirpath',
-            expression: "iif(item.where(linkId='ecg-lvh').answer.value = true,1,0)"
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cBase',
-            language: 'text/fhirpath',
-            expression: '18.8144'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cFemale',
-            language: 'text/fhirpath',
-            expression: '%female * -1.2146'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cAge',
-            language: 'text/fhirpath',
-            expression: '%cvdAge.ln() * -1.8443'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cAgeFemale',
-            language: 'text/fhirpath',
-            expression: '%female * %cvdAge.ln() * 0.3668'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cSBP',
-            language: 'text/fhirpath',
-            expression: '%systolicBP.ln() * -1.4032'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cSmoker',
-            language: 'text/fhirpath',
-            expression: '%smoker * -0.3899'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cTcHdl',
-            language: 'text/fhirpath',
-            expression: '(%totalCh / %hdl).ln() * -0.539'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cDiabetes',
-            language: 'text/fhirpath',
-            expression: '%diabetes * -0.3036'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cDiabetesFemale',
-            language: 'text/fhirpath',
-            expression: '%female * %diabetes * -0.1697'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cEcgLvh',
-            language: 'text/fhirpath',
-            expression: '%ecgLvh * -0.3362'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'sumOfCoeffs',
-            language: 'text/fhirpath',
-            expression:
-              '%cBase + %cFemale + %cAge + %cAgeFemale + %cSBP + %cSmoker + %cTcHdl + %cDiabetes + %cDiabetesFemale + %cEcgLvh'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cvdScale',
-            language: 'text/fhirpath',
-            expression: '(0.6536 + (%sumOfCoeffs * -0.2402)).exp()'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cvdU',
-            language: 'text/fhirpath',
-            expression: '(5.ln()-%sumOfCoeffs)/%cvdScale'
-          }
-        },
-        {
-          url: 'http://hl7.org/fhir/StructureDefinition/variable',
-          valueExpression: {
-            name: 'cvdScore',
-            language: 'text/fhirpath',
-            expression: '(1 - (%cvdU.exp()*-1).exp()) * 100'
-          }
-        }
-      ],
-      linkId: 'absolute-cvd-risk-calculation',
-      text: 'Absolute Cardiovascular Risk Calculation ',
-      type: 'group',
-      item: [
-        {
-          linkId: 'instruction-use-updated-cvd-risk-calculator',
-          _text: {
-            extension: [
-              {
-                url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
-                valueString:
-                  '<div xmlns="http://www.w3.org/1999/xhtml">\r\n        <b><p>NOTE: The Australian guideline for assessing and managing cardiovascular disease risk recommends the use of the online <a href="https://www.cvdcheck.org.au/calculator" target="_blank">Australian CVD risk calculator</a>.</p></b>\r\n    The calculator below should only be used for technology demonstration purposes.</p>\r\n</div>'
-              }
-            ]
-          },
-          text: 'NOTE: The Australian guideline for assessing and managing cardiovascular disease risk recommends the use of the online Australian CVD risk calculator (https://www.cvdcheck.org.au/calculator). The calculator below should only be used for technology demonstration purposes.',
-          type: 'display',
-          repeats: false
-        },
-        {
-          linkId: 'patient-age',
-          text: 'Age',
-          type: 'integer',
-          repeats: false
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
-              valueCodeableConcept: {
-                coding: [
-                  {
-                    system: 'http://hl7.org/fhir/questionnaire-item-control',
-                    code: 'radio-button'
-                  }
-                ]
-              }
-            }
-          ],
-          linkId: 'gender',
-          text: 'Gender',
-          type: 'choice',
-          repeats: false,
-          answerValueSet: 'http://hl7.org/fhir/ValueSet/administrative-gender'
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
-              valueCodeableConcept: {
-                coding: [
-                  {
-                    system: 'http://hl7.org/fhir/questionnaire-item-control',
-                    code: 'radio-button'
-                  }
-                ]
-              }
-            }
-          ],
-          linkId: 'smoking-status',
-          text: 'Smoking status',
-          type: 'choice',
-          repeats: false,
-          answerOption: [
-            {
-              valueCoding: {
-                system: 'http://snomed.info/sct',
-                code: '266919005',
-                display: 'Never smoked'
-              }
-            },
-            {
-              valueCoding: {
-                system: 'http://snomed.info/sct',
-                code: '77176002',
-                display: 'Smoker'
-              }
-            },
-            {
-              valueCoding: {
-                system: 'http://snomed.info/sct',
-                code: '8517006',
-                display: 'Ex-Smoker'
-              }
-            },
-            {
-              valueCoding: {
-                system: 'http://snomed.info/sct',
-                code: '16090371000119103',
-                display: 'Environmental exposure to tobacco smoke (home, car, etc)'
-              }
-            },
-            {
-              valueString: 'Wants to quit'
-            },
-            {
-              valueString: 'Other tobacco use'
-            }
-          ]
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'mm[Hg]',
-                display: 'mm Hg'
-              }
-            }
-          ],
-          linkId: 'systolic-blood-pressure',
-          text: 'Systolic Blood Pressure',
-          type: 'decimal',
-          item: [
-            {
-              extension: [
-                {
-                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
-                  valueCodeableConcept: {
-                    coding: [
-                      {
-                        system: 'http://hl7.org/fhir/questionnaire-item-control',
-                        code: 'prompt'
-                      }
-                    ]
-                  }
-                }
-              ],
-              linkId: 'systolic-blood-pressure-prompt',
-              text: '75 or more',
-              type: 'display'
-            }
-          ]
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'mmol/L',
-                display: 'mmol/L'
-              }
-            }
-          ],
-          linkId: 'total-cholesterol',
-          text: 'Total Cholesterol',
-          type: 'decimal',
-          item: [
-            {
-              extension: [
-                {
-                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
-                  valueCodeableConcept: {
-                    coding: [
-                      {
-                        system: 'http://hl7.org/fhir/questionnaire-item-control',
-                        code: 'prompt'
-                      }
-                    ]
-                  }
-                }
-              ],
-              linkId: 'total-cholesterol-prompt',
-              text: '2 or more',
-              type: 'display'
-            }
-          ]
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
-              valueCoding: {
-                system: 'http://unitsofmeasure.org',
-                code: 'mmol/L',
-                display: 'mmol/L'
-              }
-            }
-          ],
-          linkId: 'hdl-cholesterol',
-          text: 'HDL Cholesterol',
-          type: 'decimal',
-          item: [
-            {
-              extension: [
-                {
-                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
-                  valueCodeableConcept: {
-                    coding: [
-                      {
-                        system: 'http://hl7.org/fhir/questionnaire-item-control',
-                        code: 'prompt'
-                      }
-                    ]
-                  }
-                }
-              ],
-              linkId: 'hdl-cholesterol-prompt',
-              text: 'Between 0.2 - 5',
-              type: 'display'
-            }
-          ]
-        },
-        {
-          linkId: 'has-diabetes',
-          text: 'Diabetes',
-          type: 'boolean',
-          repeats: false
-        },
-        {
-          linkId: 'ecg-lvh',
-          text: 'ECG LVH',
-          type: 'boolean',
-          repeats: false
-        },
-        {
-          extension: [
-            {
-              url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-calculatedExpression',
-              valueExpression: {
-                description: 'CVD Risk Score',
-                language: 'text/fhirpath',
-                expression: '%cvdScore.round(0)'
-              }
-            }
-          ],
-          linkId: 'cvd-result',
-          text: 'Cardiovascular disease risk calculated result',
-          type: 'integer',
-          repeats: false,
-          readOnly: true
-        }
-      ]
-    }
-  ]
-};