@aehrc/smart-forms-renderer 1.0.0-alpha.42.dev10 → 1.0.0-alpha.42.dev2

package/src/stories/assets/questionnaires/QBehaviorCalculations.ts

@@ -0,0 +1,643 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+import type { Questionnaire } from 'fhir/r4';
+
+export const qLaunchContext: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'LaunchContext',
+  name: 'LaunchContext',
+  title: 'Launch Context',
+  version: '0.1.0',
+  status: 'draft',
+  publisher: 'AEHRC CSIRO',
+  date: '2024-05-01',
+  url: 'https://smartforms.csiro.au/docs/behavior/calculations/launch-context',
+  item: [
+    {
+      linkId: 'launch-context-instructions',
+      _text: {
+        extension: [
+          {
+            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
+            valueString:
+              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Form Population</strong> section for the usage of launch context.</p></div>'
+          }
+        ]
+      },
+      text: 'Please refer to the Form Population section for the usage of launch context.',
+      type: 'display',
+      repeats: false
+    }
+  ]
+};
+
+export const qVariable: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'Variable',
+  name: 'Variable',
+  title: 'Variable',
+  version: '0.1.0',
+  status: 'draft',
+  publisher: 'AEHRC CSIRO',
+  date: '2024-05-01',
+  url: 'https://smartforms.csiro.au/docs/behavior/calculations/variable',
+  item: [
+    {
+      linkId: 'variables-instructions',
+      _text: {
+        extension: [
+          {
+            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
+            valueString:
+              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Calculated Expression</strong> examples above or the <strong>Form Population</strong> section for the usage of variables.</p></div>'
+          }
+        ]
+      },
+      text: 'Please refer to the Calculated Expression examples above or the Form Population section for the usage of variables.',
+      type: 'display',
+      repeats: false
+    }
+  ]
+};
+
+export const qInitialExpression: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'InitialExpression',
+  name: 'InitialExpression',
+  title: 'Initial Expression',
+  version: '0.1.0',
+  status: 'draft',
+  publisher: 'AEHRC CSIRO',
+  date: '2024-05-01',
+  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/initial-expression',
+  item: [
+    {
+      linkId: 'initial-expression-instructions',
+      _text: {
+        extension: [
+          {
+            url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
+            valueString:
+              '<div xmlns="http://www.w3.org/1999/xhtml">\r\n <p>Please refer to the <strong>Form Population</strong> section for the usage of initial expressions.</p></div>'
+          }
+        ]
+      },
+      text: 'Please refer to the Form Population section for the usage of initial expressions.',
+      type: 'display',
+      repeats: false
+    }
+  ]
+};
+
+export const qCalculatedExpressionBMICalculator: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'CalculatedExpressionBMICalculator',
+  name: 'CalculatedExpressionBMICalculator',
+  title: 'Calculated Expression BMI Calculator',
+  version: '0.1.0',
+  status: 'draft',
+  publisher: 'AEHRC CSIRO',
+  date: '2024-05-01',
+  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/calculated-expression-1',
+  item: [
+    {
+      linkId: 'bmi-calculation',
+      text: 'BMI Calculation',
+      type: 'group',
+      repeats: false,
+      extension: [
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'height',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='patient-height').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'weight',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='patient-weight').answer.value"
+          }
+        }
+      ],
+      item: [
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'cm',
+                display: 'cm'
+              }
+            }
+          ],
+          linkId: 'patient-height',
+          text: 'Height',
+          type: 'decimal',
+          repeats: false,
+          readOnly: false
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'kg',
+                display: 'kg'
+              }
+            }
+          ],
+          linkId: 'patient-weight',
+          text: 'Weight',
+          type: 'decimal',
+          repeats: false,
+          readOnly: false
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-calculatedExpression',
+              valueExpression: {
+                description: 'BMI calculation',
+                language: 'text/fhirpath',
+                expression: '(%weight/((%height/100).power(2))).round(1)'
+              }
+            },
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'kg/m2',
+                display: 'kg/m2'
+              }
+            }
+          ],
+          linkId: 'bmi-result',
+          text: 'Value',
+          type: 'decimal',
+          repeats: false,
+          readOnly: true
+        }
+      ]
+    }
+  ]
+};
+
+export const qCalculatedExpressionCvdRiskCalculator: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'CalculatedExpressionCvdRiskCalculator',
+  name: 'CalculatedExpressionCvdRiskCalculator',
+  title: 'Calculated Expression CVD Risk Calculator',
+  version: '0.1.0',
+  status: 'draft',
+  publisher: 'AEHRC CSIRO',
+  date: '2024-05-01',
+  url: 'https://smartforms.csiro.au/docs/behavior/choice-restrictions/calculated-expression-2',
+  item: [
+    {
+      extension: [
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'female',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='gender').answer.value.code='female', 1, 0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'age',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='patient-age').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdAge',
+            language: 'text/fhirpath',
+            expression: 'iif(%age > 74, 74, iif(%age < 35, 35, %age))'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'systolicBP',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='systolic-blood-pressure').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'smoker',
+            language: 'text/fhirpath',
+            expression:
+              "iif(item.where(linkId='smoking-status').answer.value.code='77176002', 1, 0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'totalCh',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='total-cholesterol').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'hdl',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='hdl-cholesterol').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'diabetes',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='has-diabetes').answer.value = true,1,0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'ecgLvh',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='ecg-lvh').answer.value = true,1,0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cBase',
+            language: 'text/fhirpath',
+            expression: '18.8144'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cFemale',
+            language: 'text/fhirpath',
+            expression: '%female * -1.2146'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cAge',
+            language: 'text/fhirpath',
+            expression: '%cvdAge.ln() * -1.8443'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cAgeFemale',
+            language: 'text/fhirpath',
+            expression: '%female * %cvdAge.ln() * 0.3668'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cSBP',
+            language: 'text/fhirpath',
+            expression: '%systolicBP.ln() * -1.4032'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cSmoker',
+            language: 'text/fhirpath',
+            expression: '%smoker * -0.3899'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cTcHdl',
+            language: 'text/fhirpath',
+            expression: '(%totalCh / %hdl).ln() * -0.539'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cDiabetes',
+            language: 'text/fhirpath',
+            expression: '%diabetes * -0.3036'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cDiabetesFemale',
+            language: 'text/fhirpath',
+            expression: '%female * %diabetes * -0.1697'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cEcgLvh',
+            language: 'text/fhirpath',
+            expression: '%ecgLvh * -0.3362'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'sumOfCoeffs',
+            language: 'text/fhirpath',
+            expression:
+              '%cBase + %cFemale + %cAge + %cAgeFemale + %cSBP + %cSmoker + %cTcHdl + %cDiabetes + %cDiabetesFemale + %cEcgLvh'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdScale',
+            language: 'text/fhirpath',
+            expression: '(0.6536 + (%sumOfCoeffs * -0.2402)).exp()'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdU',
+            language: 'text/fhirpath',
+            expression: '(5.ln()-%sumOfCoeffs)/%cvdScale'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdScore',
+            language: 'text/fhirpath',
+            expression: '(1 - (%cvdU.exp()*-1).exp()) * 100'
+          }
+        }
+      ],
+      linkId: 'absolute-cvd-risk-calculation',
+      text: 'Absolute Cardiovascular Risk Calculation ',
+      type: 'group',
+      item: [
+        {
+          linkId: 'instruction-use-updated-cvd-risk-calculator',
+          _text: {
+            extension: [
+              {
+                url: 'http://hl7.org/fhir/StructureDefinition/rendering-xhtml',
+                valueString:
+                  '<div xmlns="http://www.w3.org/1999/xhtml">\r\n        <b><p>NOTE: The Australian guideline for assessing and managing cardiovascular disease risk recommends the use of the online <a href="https://www.cvdcheck.org.au/calculator" target="_blank">Australian CVD risk calculator</a>.</p></b>\r\n    The calculator below should only be used for technology demonstration purposes.</p>\r\n</div>'
+              }
+            ]
+          },
+          text: 'NOTE: The Australian guideline for assessing and managing cardiovascular disease risk recommends the use of the online Australian CVD risk calculator (https://www.cvdcheck.org.au/calculator). The calculator below should only be used for technology demonstration purposes.',
+          type: 'display',
+          repeats: false
+        },
+        {
+          linkId: 'patient-age',
+          text: 'Age',
+          type: 'integer',
+          repeats: false
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+              valueCodeableConcept: {
+                coding: [
+                  {
+                    system: 'http://hl7.org/fhir/questionnaire-item-control',
+                    code: 'radio-button'
+                  }
+                ]
+              }
+            }
+          ],
+          linkId: 'gender',
+          text: 'Gender',
+          type: 'choice',
+          repeats: false,
+          answerValueSet: 'http://hl7.org/fhir/ValueSet/administrative-gender'
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+              valueCodeableConcept: {
+                coding: [
+                  {
+                    system: 'http://hl7.org/fhir/questionnaire-item-control',
+                    code: 'radio-button'
+                  }
+                ]
+              }
+            }
+          ],
+          linkId: 'smoking-status',
+          text: 'Smoking status',
+          type: 'choice',
+          repeats: false,
+          answerOption: [
+            {
+              valueCoding: {
+                system: 'http://snomed.info/sct',
+                code: '266919005',
+                display: 'Never smoked'
+              }
+            },
+            {
+              valueCoding: {
+                system: 'http://snomed.info/sct',
+                code: '77176002',
+                display: 'Smoker'
+              }
+            },
+            {
+              valueCoding: {
+                system: 'http://snomed.info/sct',
+                code: '8517006',
+                display: 'Ex-Smoker'
+              }
+            },
+            {
+              valueCoding: {
+                system: 'http://snomed.info/sct',
+                code: '16090371000119103',
+                display: 'Environmental exposure to tobacco smoke (home, car, etc)'
+              }
+            },
+            {
+              valueString: 'Wants to quit'
+            },
+            {
+              valueString: 'Other tobacco use'
+            }
+          ]
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'mm[Hg]',
+                display: 'mm Hg'
+              }
+            }
+          ],
+          linkId: 'systolic-blood-pressure',
+          text: 'Systolic Blood Pressure',
+          type: 'decimal',
+          item: [
+            {
+              extension: [
+                {
+                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+                  valueCodeableConcept: {
+                    coding: [
+                      {
+                        system: 'http://hl7.org/fhir/questionnaire-item-control',
+                        code: 'prompt'
+                      }
+                    ]
+                  }
+                }
+              ],
+              linkId: 'systolic-blood-pressure-prompt',
+              text: '75 or more',
+              type: 'display'
+            }
+          ]
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'mmol/L',
+                display: 'mmol/L'
+              }
+            }
+          ],
+          linkId: 'total-cholesterol',
+          text: 'Total Cholesterol',
+          type: 'decimal',
+          item: [
+            {
+              extension: [
+                {
+                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+                  valueCodeableConcept: {
+                    coding: [
+                      {
+                        system: 'http://hl7.org/fhir/questionnaire-item-control',
+                        code: 'prompt'
+                      }
+                    ]
+                  }
+                }
+              ],
+              linkId: 'total-cholesterol-prompt',
+              text: '2 or more',
+              type: 'display'
+            }
+          ]
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-unit',
+              valueCoding: {
+                system: 'http://unitsofmeasure.org',
+                code: 'mmol/L',
+                display: 'mmol/L'
+              }
+            }
+          ],
+          linkId: 'hdl-cholesterol',
+          text: 'HDL Cholesterol',
+          type: 'decimal',
+          item: [
+            {
+              extension: [
+                {
+                  url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+                  valueCodeableConcept: {
+                    coding: [
+                      {
+                        system: 'http://hl7.org/fhir/questionnaire-item-control',
+                        code: 'prompt'
+                      }
+                    ]
+                  }
+                }
+              ],
+              linkId: 'hdl-cholesterol-prompt',
+              text: 'Between 0.2 - 5',
+              type: 'display'
+            }
+          ]
+        },
+        {
+          linkId: 'has-diabetes',
+          text: 'Diabetes',
+          type: 'boolean',
+          repeats: false
+        },
+        {
+          linkId: 'ecg-lvh',
+          text: 'ECG LVH',
+          type: 'boolean',
+          repeats: false
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-calculatedExpression',
+              valueExpression: {
+                description: 'CVD Risk Score',
+                language: 'text/fhirpath',
+                expression: '%cvdScore.round(0)'
+              }
+            }
+          ],
+          linkId: 'cvd-result',
+          text: 'Cardiovascular disease risk calculated result',
+          type: 'integer',
+          repeats: false,
+          readOnly: true
+        }
+      ]
+    }
+  ]
+};