@aehrc/smart-forms-renderer 0.44.3 → 0.45.0

package/lib/src/utils/questionnaireStoreUtils/addAdditionalVariables.js

@@ -0,0 +1,43 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+export function addAdditionalVariables(existingVariables, additionalVariables) {
+    for (const key in additionalVariables) {
+        const variable = additionalVariables[key];
+        if (variable && isVariable(variable)) {
+            const expression = variable.valueExpression;
+            if (expression && expression.language && expression.name) {
+                if (expression.language === 'text/fhirpath') {
+                    existingVariables.fhirPathVariables['QuestionnaireLevel'].push(expression);
+                }
+                else if (expression.language === 'application/x-fhir-query') {
+                    existingVariables.xFhirQueryVariables[expression.name] = {
+                        valueExpression: expression
+                    };
+                }
+            }
+        }
+    }
+    return existingVariables;
+}
+function isVariable(variable) {
+    var _a, _b;
+    const v = variable;
+    return ((v.url === 'http://hl7.org/fhir/StructureDefinition/variable' &&
+        ((_a = v.valueExpression) === null || _a === void 0 ? void 0 : _a.language) === 'text/fhirpath') ||
+        ((_b = v.valueExpression) === null || _b === void 0 ? void 0 : _b.language) === 'application/x-fhir-query');
+}
+//# sourceMappingURL=addAdditionalVariables.js.map

package/lib/src/utils/questionnaireStoreUtils/addAdditionalVariables.js.map

@@ -0,0 +1 @@
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package/lib/src/utils/questionnaireStoreUtils/addDisplayToCodings.d.ts

@@ -0,0 +1,15 @@
+import type { Coding, QuestionnaireItemAnswerOption } from 'fhir/r4';
+import type { CodeSystemLookupPromise } from '../../interfaces/lookup.interface';
+export declare function addDisplayToProcessedCodings(processedCodings: Record<string, Coding[]>, terminologyServerUrl: string): Promise<Record<string, Coding[]>>;
+export declare function addDisplayToAnswerOptions(answerOptions: Record<string, QuestionnaireItemAnswerOption[]>, terminologyServerUrl: string): Promise<Record<string, QuestionnaireItemAnswerOption[]>>;
+export declare function addDisplayToCodingArray(codings: Coding[], terminologyServerUrl: string): Promise<Coding[]>;
+export declare function getCodeSystemLookupPromise(query: string, terminologyServerUrl: string): Promise<any>;
+export declare function resolveLookupPromises(codeSystemLookupPromises: Record<string, CodeSystemLookupPromise>): Promise<Record<string, CodeSystemLookupPromise>>;
+export interface LookupResponse {
+    parameter: [DisplayParameter];
+}
+export interface DisplayParameter {
+    name: 'display';
+    valueString: string;
+}
+export declare function lookupResponseIsValid(response: any): response is LookupResponse;

package/lib/src/utils/questionnaireStoreUtils/addDisplayToCodings.js

@@ -0,0 +1,160 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+import * as FHIR from 'fhirclient';
+// Use this for QuestionnaireStore.ProcessedCodings
+export function addDisplayToProcessedCodings(processedCodings, terminologyServerUrl) {
+    return __awaiter(this, void 0, void 0, function* () {
+        var _a;
+        // Store code system lookup promises for codings without displays
+        const codeSystemLookupPromises = {};
+        for (const key in processedCodings) {
+            const codings = processedCodings[key];
+            for (const coding of codings) {
+                if (!coding.display) {
+                    const query = `system=${coding.system}&code=${coding.code}`;
+                    codeSystemLookupPromises[query] = {
+                        promise: getCodeSystemLookupPromise(query, terminologyServerUrl),
+                        oldCoding: coding
+                    };
+                }
+            }
+        }
+        // Resolves lookup promises in one go and assign newCodings to processedCodings
+        const resolvedCodeSystemLookupPromises = yield resolveLookupPromises(codeSystemLookupPromises);
+        for (const key in processedCodings) {
+            const codings = processedCodings[key];
+            for (const coding of codings) {
+                const lookUpKey = `system=${coding.system}&code=${coding.code}`;
+                const resolvedLookup = resolvedCodeSystemLookupPromises[lookUpKey];
+                if ((_a = resolvedLookup === null || resolvedLookup === void 0 ? void 0 : resolvedLookup.newCoding) === null || _a === void 0 ? void 0 : _a.display) {
+                    coding.display = resolvedLookup.newCoding.display;
+                }
+            }
+        }
+        return processedCodings;
+    });
+}
+// Use this for a Record<linkId, answerOption[]>
+export function addDisplayToAnswerOptions(answerOptions, terminologyServerUrl) {
+    return __awaiter(this, void 0, void 0, function* () {
+        var _a;
+        // Store code system lookup promises for codings without displays
+        const codeSystemLookupPromises = {};
+        for (const key in answerOptions) {
+            const options = answerOptions[key];
+            for (const option of options) {
+                if (option.valueCoding && !option.valueCoding.display) {
+                    const query = `system=${option.valueCoding.system}&code=${option.valueCoding.code}`;
+                    codeSystemLookupPromises[query] = {
+                        promise: getCodeSystemLookupPromise(query, terminologyServerUrl),
+                        oldCoding: option.valueCoding
+                    };
+                }
+            }
+        }
+        // Resolves lookup promises in one go and assign newCodings to processedCodings
+        const resolvedCodeSystemLookupPromises = yield resolveLookupPromises(codeSystemLookupPromises);
+        for (const key in answerOptions) {
+            const options = answerOptions[key];
+            for (const option of options) {
+                if (option.valueCoding) {
+                    const lookUpKey = `system=${option.valueCoding.system}&code=${option.valueCoding.code}`;
+                    const resolvedLookup = resolvedCodeSystemLookupPromises[lookUpKey];
+                    if ((_a = resolvedLookup === null || resolvedLookup === void 0 ? void 0 : resolvedLookup.newCoding) === null || _a === void 0 ? void 0 : _a.display) {
+                        option.valueCoding.display = resolvedLookup.newCoding.display;
+                    }
+                }
+            }
+        }
+        return answerOptions;
+    });
+}
+// Use this for an array of codings
+export function addDisplayToCodingArray(codings, terminologyServerUrl) {
+    return __awaiter(this, void 0, void 0, function* () {
+        var _a;
+        // Store code system lookup promises for codings without displays
+        const codeSystemLookupPromises = {};
+        for (const coding of codings) {
+            if (!coding.display) {
+                const query = `system=${coding.system}&code=${coding.code}`;
+                codeSystemLookupPromises[query] = {
+                    promise: getCodeSystemLookupPromise(query, terminologyServerUrl),
+                    oldCoding: coding
+                };
+            }
+        }
+        // Resolves lookup promises in one go and assign newCodings to processedCodings
+        const resolvedCodeSystemLookupPromises = yield resolveLookupPromises(codeSystemLookupPromises);
+        for (const coding of codings) {
+            const lookUpKey = `system=${coding.system}&code=${coding.code}`;
+            const resolvedLookup = resolvedCodeSystemLookupPromises[lookUpKey];
+            if ((_a = resolvedLookup === null || resolvedLookup === void 0 ? void 0 : resolvedLookup.newCoding) === null || _a === void 0 ? void 0 : _a.display) {
+                coding.display = resolvedLookup.newCoding.display;
+            }
+        }
+        return codings;
+    });
+}
+export function getCodeSystemLookupPromise(query, terminologyServerUrl) {
+    return FHIR.client({ serverUrl: terminologyServerUrl }).request({
+        url: `CodeSystem/$lookup?${query}`
+    });
+}
+export function resolveLookupPromises(codeSystemLookupPromises) {
+    return __awaiter(this, void 0, void 0, function* () {
+        var _a, _b;
+        const newCodeSystemLookupPromises = {};
+        const lookupPromiseKeys = Object.keys(codeSystemLookupPromises);
+        const lookupPromiseValues = Object.values(codeSystemLookupPromises);
+        const promises = lookupPromiseValues.map((lookupPromise) => lookupPromise.promise);
+        const settledPromises = yield Promise.allSettled(promises);
+        for (const [i, settledPromise] of settledPromises.entries()) {
+            if (settledPromise.status === 'rejected') {
+                continue;
+            }
+            const lookupResult = settledPromise.value;
+            if (!lookupResponseIsValid(lookupResult)) {
+                continue;
+            }
+            const key = lookupPromiseKeys[i];
+            const lookupPromise = lookupPromiseValues[i];
+            if (key && lookupPromise) {
+                lookupPromise.newCoding = Object.assign(Object.assign({}, lookupPromise.oldCoding), { display: (_b = (_a = lookupResult.parameter.find((p) => p.name === 'display')) === null || _a === void 0 ? void 0 : _a.valueString) !== null && _b !== void 0 ? _b : undefined });
+                newCodeSystemLookupPromises[key] = lookupPromise;
+            }
+        }
+        return newCodeSystemLookupPromises;
+    });
+}
+export function lookupResponseIsValid(response) {
+    return (response &&
+        response.resourceType === 'Parameters' &&
+        response.parameter &&
+        response.parameter.find((p) => p.name === 'display') &&
+        response.parameter.find((p) => p.name === 'display').valueString);
+}
+//# sourceMappingURL=addDisplayToCodings.js.map

package/lib/src/utils/questionnaireStoreUtils/addDisplayToCodings.js.map

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package/lib/src/utils/questionnaireStoreUtils/createQuestionaireModel.d.ts

@@ -0,0 +1,3 @@
+import type { Questionnaire } from 'fhir/r4';
+import type { QuestionnaireModel } from '../../interfaces/questionnaireStore.interface';
+export declare function createQuestionnaireModel(questionnaire: Questionnaire, additionalVariables: Record<string, object>, terminologyServerUrl: string): Promise<QuestionnaireModel>;

package/lib/src/utils/questionnaireStoreUtils/createQuestionaireModel.js

@@ -0,0 +1,101 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+import { extractLaunchContexts } from './extractLaunchContext';
+import { extractQuestionnaireLevelVariables } from './extractVariables';
+import { extractTabs } from './extractTabs';
+import { extractPages } from './extractPages';
+import { extractContainedValueSets } from './extractContainedValueSets';
+import { extractOtherExtensions } from './extractOtherExtensions';
+import { resolveValueSets } from './resolveValueSets';
+import { addAdditionalVariables } from './addAdditionalVariables';
+import { getLinkIdPreferredTerminologyServerTuples, getLinkIdTypeTuples } from '../qItem';
+import { addDisplayToAnswerOptions, addDisplayToProcessedCodings } from './addDisplayToCodings';
+export function createQuestionnaireModel(questionnaire, additionalVariables, terminologyServerUrl) {
+    return __awaiter(this, void 0, void 0, function* () {
+        if (!questionnaire.item) {
+            return createEmptyModel();
+        }
+        const itemTypes = Object.fromEntries(getLinkIdTypeTuples(questionnaire));
+        const itemPreferredTerminologyServers = Object.fromEntries(getLinkIdPreferredTerminologyServerTuples(questionnaire));
+        const tabs = extractTabs(questionnaire);
+        const pages = extractPages(questionnaire);
+        const launchContexts = extractLaunchContexts(questionnaire);
+        let variables = extractQuestionnaireLevelVariables(questionnaire);
+        variables = addAdditionalVariables(variables, additionalVariables);
+        const extractContainedValueSetsResult = extractContainedValueSets(questionnaire, terminologyServerUrl);
+        let valueSetPromises = extractContainedValueSetsResult.valueSetPromises;
+        let processedValueSetCodings = extractContainedValueSetsResult.processedValueSetCodings;
+        const processedValueSetUrls = extractContainedValueSetsResult.processedValueSetUrls;
+        const extractOtherExtensionsResult = extractOtherExtensions(questionnaire, variables, valueSetPromises, itemPreferredTerminologyServers, terminologyServerUrl);
+        const { enableWhenItems, enableWhenExpressions, calculatedExpressions, initialExpressions, answerExpressions, answerOptions } = extractOtherExtensionsResult;
+        variables = extractOtherExtensionsResult.variables;
+        valueSetPromises = extractOtherExtensionsResult.valueSetPromises;
+        const resolveValueSetsResult = yield resolveValueSets(variables, valueSetPromises, processedValueSetCodings, terminologyServerUrl);
+        variables = resolveValueSetsResult.variables;
+        processedValueSetCodings = resolveValueSetsResult.processedValueSetCodings;
+        // In processedCodings, add display values to codings lacking them
+        processedValueSetCodings = yield addDisplayToProcessedCodings(processedValueSetCodings, terminologyServerUrl);
+        // In answerOptions, add display values to codings lacking them
+        const completeAnswerOptions = yield addDisplayToAnswerOptions(answerOptions, terminologyServerUrl);
+        return {
+            itemTypes,
+            itemPreferredTerminologyServers,
+            tabs,
+            pages,
+            variables,
+            launchContexts,
+            enableWhenItems,
+            enableWhenExpressions,
+            calculatedExpressions,
+            initialExpressions,
+            answerExpressions,
+            answerOptions: completeAnswerOptions,
+            processedValueSetCodings,
+            processedValueSetUrls,
+            fhirPathContext: {}
+        };
+    });
+}
+function createEmptyModel() {
+    return {
+        itemTypes: {},
+        itemPreferredTerminologyServers: {},
+        tabs: {},
+        pages: {},
+        variables: { fhirPathVariables: {}, xFhirQueryVariables: {} },
+        launchContexts: {},
+        calculatedExpressions: {},
+        initialExpressions: {},
+        enableWhenExpressions: { singleExpressions: {}, repeatExpressions: {} },
+        answerExpressions: {},
+        answerOptions: {},
+        enableWhenItems: { singleItems: {}, repeatItems: {} },
+        processedValueSetCodings: {},
+        processedValueSetUrls: {},
+        fhirPathContext: {}
+    };
+}
+//# sourceMappingURL=createQuestionaireModel.js.map

package/lib/src/utils/questionnaireStoreUtils/createQuestionaireModel.js.map

@@ -0,0 +1 @@
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package/lib/src/utils/questionnaireStoreUtils/extractContainedValueSets.d.ts

@@ -0,0 +1,13 @@
+import type { ValueSetPromise } from '../../interfaces/valueSet.interface';
+import type { Coding, Questionnaire, ValueSet } from 'fhir/r4';
+export declare function extractContainedValueSets(questionnaire: Questionnaire, terminologyServerUrl: string): {
+    processedValueSetCodings: Record<string, Coding[]>;
+    processedValueSetUrls: Record<string, string>;
+    valueSetPromises: Record<string, ValueSetPromise>;
+};
+/**
+ * Sets an array of codings with the values from a valueSet
+ *
+ * @author Sean Fong
+ */
+export declare function getValueSetUrlFromContained(valueSet: ValueSet): string;

package/lib/src/utils/questionnaireStoreUtils/extractContainedValueSets.js

@@ -0,0 +1,59 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { getValueSetCodings, getValueSetPromise } from '../valueSet';
+export function extractContainedValueSets(questionnaire, terminologyServerUrl) {
+    if (!questionnaire.contained || questionnaire.contained.length === 0) {
+        return { processedValueSetCodings: {}, processedValueSetUrls: {}, valueSetPromises: {} };
+    }
+    // Process contained ValueSets
+    const processedValueSetCodings = {};
+    const processedValueSetUrls = {};
+    const valueSetPromises = {};
+    for (const entry of questionnaire.contained) {
+        if (entry.resourceType !== 'ValueSet' || !entry.id) {
+            continue;
+        }
+        if (entry.expansion) {
+            // Store contained valueSet codings
+            processedValueSetCodings[entry.id] = getValueSetCodings(entry);
+            continue;
+        }
+        // Add unexpanded contained ValueSets to valueSetPromiseMap
+        const valueSetUrl = getValueSetUrlFromContained(entry);
+        if (valueSetUrl) {
+            valueSetPromises[entry.id] = {
+                promise: getValueSetPromise(valueSetUrl, terminologyServerUrl)
+            };
+            continue;
+        }
+        if (entry.url) {
+            processedValueSetUrls[entry.id] = entry.url;
+        }
+    }
+    return { processedValueSetCodings, processedValueSetUrls, valueSetPromises };
+}
+/**
+ * Sets an array of codings with the values from a valueSet
+ *
+ * @author Sean Fong
+ */
+export function getValueSetUrlFromContained(valueSet) {
+    var _a, _b;
+    const urls = (_b = (_a = valueSet.compose) === null || _a === void 0 ? void 0 : _a.include) === null || _b === void 0 ? void 0 : _b.map((include) => { var _a; return ((_a = include.valueSet) === null || _a === void 0 ? void 0 : _a[0]) ? include.valueSet[0] : ''; });
+    return urls && urls.length > 0 ? urls[0] : '';
+}
+//# sourceMappingURL=extractContainedValueSets.js.map

package/lib/src/utils/questionnaireStoreUtils/extractContainedValueSets.js.map

@@ -0,0 +1 @@
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package/lib/src/utils/questionnaireStoreUtils/extractLaunchContext.d.ts

@@ -0,0 +1,3 @@
+import type { Questionnaire } from 'fhir/r4';
+import type { LaunchContext } from '../../interfaces/populate.interface';
+export declare function extractLaunchContexts(questionnaire: Questionnaire): Record<string, LaunchContext>;

package/lib/src/utils/questionnaireStoreUtils/extractLaunchContext.js

@@ -0,0 +1,18 @@
+import { isLaunchContext } from '../populateContexts';
+export function extractLaunchContexts(questionnaire) {
+    var _a, _b;
+    if (!questionnaire.extension || questionnaire.extension.length === 0) {
+        return {};
+    }
+    const launchContexts = {};
+    for (const ext of questionnaire.extension) {
+        if (isLaunchContext(ext)) {
+            const launchContextName = (_a = ext.extension[0].valueId) !== null && _a !== void 0 ? _a : (_b = ext.extension[0].valueCoding) === null || _b === void 0 ? void 0 : _b.code;
+            if (launchContextName) {
+                launchContexts[launchContextName] = ext;
+            }
+        }
+    }
+    return launchContexts;
+}
+//# sourceMappingURL=extractLaunchContext.js.map

package/lib/src/utils/questionnaireStoreUtils/extractLaunchContext.js.map

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package/lib/src/utils/questionnaireStoreUtils/extractOtherExtensions.d.ts

@@ -0,0 +1,35 @@
+import type { Questionnaire, QuestionnaireItem, QuestionnaireItemAnswerOption, QuestionnaireItemEnableWhen } from 'fhir/r4';
+import type { CalculatedExpression } from '../../interfaces/calculatedExpression.interface';
+import type { EnableWhenExpressions, EnableWhenItems, EnableWhenRepeatItemProperties, EnableWhenSingleItemProperties } from '../../interfaces/enableWhen.interface';
+import type { AnswerExpression } from '../../interfaces/answerExpression.interface';
+import type { ValueSetPromise } from '../../interfaces/valueSet.interface';
+import type { Variables } from '../../interfaces/variables.interface';
+import type { InitialExpression } from '../../interfaces/initialExpression.interface';
+interface ReturnParamsRecursive {
+    variables: Variables;
+    enableWhenItems: EnableWhenItems;
+    enableWhenExpressions: EnableWhenExpressions;
+    calculatedExpressions: Record<string, CalculatedExpression[]>;
+    initialExpressions: Record<string, InitialExpression>;
+    answerExpressions: Record<string, AnswerExpression>;
+    valueSetPromises: Record<string, ValueSetPromise>;
+    answerOptions: Record<string, QuestionnaireItemAnswerOption[]>;
+}
+export declare function extractOtherExtensions(questionnaire: Questionnaire, variables: Variables, valueSetPromises: Record<string, ValueSetPromise>, itemPreferredTerminologyServers: Record<string, string>, terminologyServerUrl: string): ReturnParamsRecursive;
+/**
+ * Get enableWhen items' linked items and enableBehaviour attribute and save them in an EnableWhenItemProperties object
+ *
+ * @author Sean Fong
+ */
+export declare function initialiseEnableWhenItemProperties(qItem: QuestionnaireItem, questionnaire: Questionnaire, parentLinkId?: string): {
+    enableWhenItemType: 'single' | 'repeat';
+    enableWhenItemProperties: EnableWhenSingleItemProperties | EnableWhenRepeatItemProperties;
+} | null;
+export declare function initialiseEnableWhenRepeatItemProperties(qItem: QuestionnaireItem, enableWhen: QuestionnaireItemEnableWhen[], questionnaire: Questionnaire, parentLinkId: string): EnableWhenRepeatItemProperties | null;
+/**
+ * Get enableWhen items' linked items and enableBehaviour attribute and save them in an EnableWhenItemProperties object
+ *
+ * @author Sean Fong
+ */
+export declare function initialiseEnableWhenSingleItemProperties(qItem: QuestionnaireItem, enableWhen: QuestionnaireItemEnableWhen[]): EnableWhenSingleItemProperties;
+export {};