@aehrc/smart-forms-renderer 0.44.2 → 0.44.4

package/lib/src/utils/validateQuestionnaire.js

@@ -0,0 +1,559 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import { getQrItemsIndex, mapQItemsIndex } from './mapItem';
+import { isHiddenByEnableWhen } from './qItem';
+import { getDecimalPrecision, getMaxValue, getMinValue, getRegexString, getRegexValidation, getShortText } from './itemControl';
+import { structuredDataCapture } from 'fhir-sdc-helpers';
+import { parseDecimalStringToFloat } from './parseInputs';
+import dayjs from 'dayjs';
+import { questionnaireStore } from '../stores';
+export var ValidationResult;
+(function (ValidationResult) {
+    ValidationResult["unknown"] = "unknown";
+    ValidationResult["questionnaireNotFound"] = "questionnaireNotFound";
+    ValidationResult["questionnaireInactive"] = "questionnaireInactive";
+    ValidationResult["questionnaireDraft"] = "questionnaireDraft";
+    ValidationResult["questionnaireRetired"] = "questionnaireRetired";
+    ValidationResult["invalidLinkId"] = "invalidLinkId";
+    ValidationResult["invalidType"] = "invalidType";
+    ValidationResult["invalidAnswerType"] = "invalidAnswerType";
+    ValidationResult["invalidAnswerOption"] = "invalidAnswerOption";
+    ValidationResult["exclusiveAnswerOption"] = "exclusiveAnswerOption";
+    ValidationResult["invalidUrlValue"] = "invalidUrlValue";
+    ValidationResult["groupShouldNotHaveAnswers"] = "groupShouldNotHaveAnswers";
+    ValidationResult["required"] = "required";
+    ValidationResult["invariant"] = "invariant";
+    ValidationResult["invariantExecution"] = "invariantExecution";
+    ValidationResult["repeats"] = "repeats";
+    ValidationResult["minCount"] = "minCount";
+    ValidationResult["maxCount"] = "maxCount";
+    ValidationResult["minValue"] = "minValue";
+    ValidationResult["maxValue"] = "maxValue";
+    ValidationResult["maxDecimalPlaces"] = "maxDecimalPlaces";
+    ValidationResult["minLength"] = "minLength";
+    ValidationResult["maxLength"] = "maxLength";
+    ValidationResult["invalidNewLine"] = "invalidNewLine";
+    ValidationResult["invalidCoding"] = "invalidCoding";
+    ValidationResult["tsError"] = "tsError";
+    ValidationResult["maxAttachmentSize"] = "maxAttachmentSize";
+    ValidationResult["attachmentSizeInconsistent"] = "attachmentSizeInconsistent";
+    ValidationResult["invalidAttachmentType"] = "invalidAttachmentType";
+    ValidationResult["displayAnswer"] = "displayAnswer";
+    ValidationResult["regex"] = "regex";
+    ValidationResult["regexTimeout"] = "regexTimeout";
+    ValidationResult["invalidRefValue"] = "invalidRefValue";
+    ValidationResult["invalidRefResourceType"] = "invalidRefResourceType";
+    ValidationResult["invalidRefResourceTypeRestriction"] = "invalidRefResourceTypeRestriction";
+    ValidationResult["minValueIncompatUnits"] = "minValueIncompatUnits";
+    ValidationResult["maxValueIncompatUnits"] = "maxValueIncompatUnits";
+    ValidationResult["invalidUnit"] = "invalidUnit";
+    ValidationResult["invalidUnitValueSet"] = "invalidUnitValueSet"; // The unit provided was not in the provided valueset
+})(ValidationResult || (ValidationResult = {}));
+/**
+ * Recursively go through the questionnaireResponse and check for un-filled required qItems
+ * At the moment item.required for group items are not checked
+ *
+ * @author Sean Fong
+ */
+export function validateQuestionnaire(params) {
+    var _a;
+    const { questionnaire, questionnaireResponse } = params;
+    const enableWhenIsActivated = questionnaireStore.getState().enableWhenIsActivated;
+    const enableWhenItems = questionnaireStore.getState().enableWhenItems;
+    const enableWhenExpressions = questionnaireStore.getState().enableWhenExpressions;
+    if (!questionnaire.item || questionnaire.item.length === 0) {
+        return {};
+    }
+    if (!questionnaireResponse.item || questionnaireResponse.item.length === 0) {
+        questionnaireResponse.item = [];
+    }
+    const qItemsIndexMap = mapQItemsIndex(questionnaire);
+    const topLevelQRItemsByIndex = getQrItemsIndex(questionnaire.item, questionnaireResponse.item, qItemsIndexMap);
+    const invalidItems = {};
+    let qrItemIndex = 0;
+    for (const [index, topLevelQItem] of questionnaire.item.entries()) {
+        let repeatGroupInstances = null;
+        let topLevelQRItem = (_a = topLevelQRItemsByIndex[index]) !== null && _a !== void 0 ? _a : {
+            linkId: topLevelQItem.linkId,
+            text: topLevelQItem.text
+        };
+        // topLevelQRItem being an array means this item is a repeat group
+        const isRepeatGroup = Array.isArray(topLevelQRItem);
+        if (Array.isArray(topLevelQRItem)) {
+            repeatGroupInstances = topLevelQRItem.length;
+            topLevelQRItem = {
+                linkId: topLevelQItem.linkId,
+                text: topLevelQItem.text,
+                item: topLevelQRItem
+            };
+        }
+        const locationExpression = `QuestionnaireResponse.item`;
+        validateItemRecursive({
+            qItem: topLevelQItem,
+            qrItem: topLevelQRItem,
+            qrItemIndex,
+            locationExpression,
+            invalidItems,
+            enableWhenIsActivated,
+            enableWhenItems,
+            enableWhenExpressions,
+            isRepeatGroupInstance: false
+        });
+        // Increment qrItemIndex
+        // If it's a repeat group, increment by the number of instances so qrItemIndex is correct once we reach the next item
+        if (isRepeatGroup && typeof repeatGroupInstances === 'number') {
+            qrItemIndex += repeatGroupInstances;
+        }
+        else {
+            qrItemIndex++;
+        }
+    }
+    return invalidItems;
+}
+function validateItemRecursive(params) {
+    var _a, _b, _c;
+    const { qItem, qrItem, qrItemIndex, invalidItems, enableWhenIsActivated, enableWhenItems, enableWhenExpressions, isRepeatGroupInstance } = params;
+    let { locationExpression } = params;
+    // If item is hidden by enableWhen, skip validation
+    if (isHiddenByEnableWhen({
+        linkId: qItem.linkId,
+        enableWhenIsActivated,
+        enableWhenItems,
+        enableWhenExpressions
+    })) {
+        return;
+    }
+    // Validate repeat groups
+    if (qItem.type === 'group' && qItem.repeats) {
+        if (!isRepeatGroupInstance) {
+            validateRepeatGroupRecursive({
+                qItem,
+                qrItem,
+                qrItemIndex,
+                locationExpression,
+                invalidItems,
+                enableWhenIsActivated,
+                enableWhenItems,
+                enableWhenExpressions,
+                isRepeatGroupInstance: false
+            });
+            return;
+        }
+    }
+    locationExpression = `${locationExpression}[${qrItemIndex}]`;
+    // Recursively validate groups with child items
+    const childQItems = qItem.item;
+    if (childQItems && childQItems.length > 0) {
+        const childQrItems = (_a = qrItem === null || qrItem === void 0 ? void 0 : qrItem.item) !== null && _a !== void 0 ? _a : [];
+        const indexMap = mapQItemsIndex(qItem);
+        const qrItemsByIndex = getQrItemsIndex(childQItems, childQrItems, indexMap);
+        // Check if group is required and has no answers
+        if (qItem.type === 'group' && qItem.required) {
+            if (!qrItem || qrItemsByIndex.length === 0) {
+                invalidItems[qItem.linkId] = createValidationOperationOutcome(ValidationResult.required, qItem, qrItem, null, locationExpression, (_b = invalidItems[qItem.linkId]) === null || _b === void 0 ? void 0 : _b.issue);
+            }
+        }
+        // Loop through child items
+        for (const [index, childQItem] of childQItems.entries()) {
+            const childLocationExpression = `${locationExpression}.item`;
+            let childQRItem = (_c = qrItemsByIndex[index]) !== null && _c !== void 0 ? _c : {
+                linkId: childQItem.linkId,
+                text: childQItem.text
+            };
+            if (Array.isArray(childQRItem)) {
+                childQRItem = {
+                    linkId: childQItem.linkId,
+                    text: childQItem.text,
+                    item: childQRItem
+                };
+            }
+            validateItemRecursive({
+                qItem: childQItem,
+                qrItem: childQRItem,
+                qrItemIndex: index,
+                locationExpression: childLocationExpression,
+                invalidItems: invalidItems,
+                enableWhenIsActivated,
+                enableWhenItems,
+                enableWhenExpressions,
+                isRepeatGroupInstance: false
+            });
+        }
+    }
+    // Validate the item, note that this can be either a group or a non-group
+    validateSingleItem(qItem, qrItem, invalidItems, locationExpression);
+}
+function validateRepeatGroupRecursive(params) {
+    var _a;
+    const { qItem, qrItem, qrItemIndex, locationExpression, invalidItems, enableWhenIsActivated, enableWhenItems, enableWhenExpressions } = params;
+    if (!qItem.item || qItem.item.length === 0 || !qrItem.item || qrItem.item.length === 0) {
+        return;
+    }
+    // Get repeat group answers
+    const repeatGroupAnswers = (_a = qrItem.item) !== null && _a !== void 0 ? _a : [];
+    for (const [index, repeatGroupAnswer] of repeatGroupAnswers.entries()) {
+        // Because the item is a repeat group and might have multiple answer instances, we need to increment the qItemIndex by the instanceIndex
+        const updatedQrItemIndex = qrItemIndex + index;
+        validateItemRecursive({
+            qItem: qItem,
+            qrItem: repeatGroupAnswer,
+            qrItemIndex: updatedQrItemIndex,
+            locationExpression: locationExpression,
+            invalidItems: invalidItems,
+            enableWhenIsActivated,
+            enableWhenItems,
+            enableWhenExpressions,
+            isRepeatGroupInstance: true
+        });
+    }
+}
+function validateSingleItem(qItem, qrItem, invalidItems, locationExpression) {
+    var _a, _b;
+    // Validate item.required first before every other validation check
+    if (qItem.type !== 'display') {
+        if (qItem.required && !qrItem.answer) {
+            invalidItems[qItem.linkId] = createValidationOperationOutcome(ValidationResult.required, qItem, qrItem, null, locationExpression, (_a = invalidItems[qItem.linkId]) === null || _a === void 0 ? void 0 : _a.issue);
+            return invalidItems;
+        }
+    }
+    // Validate regex, maxLength and minLength
+    if (qrItem.answer) {
+        for (const [i, answer] of qrItem.answer.entries()) {
+            // Your code here, you can use 'index' and 'answer' as needed
+            if (answer.valueString || answer.valueInteger || answer.valueDecimal || answer.valueUri) {
+                const invalidInputType = getInputInvalidType({
+                    qItem,
+                    input: getInputInString(answer),
+                    regexValidation: getRegexValidation(qItem),
+                    minLength: structuredDataCapture.getMinLength(qItem),
+                    maxLength: qItem.maxLength,
+                    maxDecimalPlaces: structuredDataCapture.getMaxDecimalPlaces(qItem),
+                    minValue: getMinValue(qItem),
+                    maxValue: getMaxValue(qItem)
+                });
+                if (invalidInputType) {
+                    invalidItems[qItem.linkId] = createValidationOperationOutcome(invalidInputType, qItem, qrItem, i, locationExpression, (_b = invalidItems[qItem.linkId]) === null || _b === void 0 ? void 0 : _b.issue);
+                }
+            }
+        }
+    }
+    return invalidItems;
+}
+function getInputInString(answer) {
+    if (!answer) {
+        return '';
+    }
+    if (answer.valueString) {
+        return answer.valueString;
+    }
+    else if (answer.valueInteger) {
+        return answer.valueInteger.toString();
+    }
+    else if (answer.valueDecimal) {
+        return answer.valueDecimal.toString();
+    }
+    else if (answer.valueUri) {
+        return answer.valueUri;
+    }
+    return '';
+}
+export function getInputInvalidType(getInputInvalidTypeParams) {
+    var _a, _b;
+    const { qItem, input, regexValidation, minLength, maxLength, maxDecimalPlaces, minValue, maxValue } = getInputInvalidTypeParams;
+    if (input) {
+        if (regexValidation && !regexValidation.expression.test(input)) {
+            return ValidationResult.regex;
+        }
+        if (minLength && input.length < minLength) {
+            return ValidationResult.minLength;
+        }
+        if (maxLength && input.length > maxLength) {
+            return ValidationResult.maxLength;
+        }
+        if (maxDecimalPlaces) {
+            const decimalPlaces = (_b = (_a = input.split('.')[1]) === null || _a === void 0 ? void 0 : _a.length) !== null && _b !== void 0 ? _b : 0;
+            if (decimalPlaces > maxDecimalPlaces) {
+                return ValidationResult.maxDecimalPlaces;
+            }
+        }
+        if (minValue) {
+            const minValueError = checkMinValue(qItem, input, minValue);
+            if (minValueError !== null) {
+                return ValidationResult.minValue;
+            }
+        }
+        if (maxValue) {
+            const maxValueError = checkMaxValue(qItem, input, maxValue);
+            if (maxValueError !== null) {
+                return ValidationResult.maxValue;
+            }
+        }
+    }
+    return null;
+}
+function checkMinValue(qItem, input, minValue) {
+    switch (qItem.type) {
+        case 'integer':
+            if (typeof minValue === 'number') {
+                if (parseInt(input) < minValue) {
+                    return ValidationResult.minValue;
+                }
+            }
+            break;
+        case 'decimal': {
+            const precision = getDecimalPrecision(qItem);
+            const decimalValue = precision
+                ? parseDecimalStringToFloat(input, precision)
+                : parseFloat(input);
+            if (typeof minValue === 'number') {
+                if (decimalValue < minValue) {
+                    return ValidationResult.minValue;
+                }
+            }
+            break;
+        }
+        case 'date':
+            if (typeof minValue === 'string') {
+                if (new Date(input) < new Date(minValue)) {
+                    return ValidationResult.minValue;
+                }
+            }
+            break;
+        case 'dateTime':
+            if (typeof minValue === 'string') {
+                if (dayjs(input).isBefore(dayjs(minValue))) {
+                    return ValidationResult.minValue;
+                }
+            }
+            break;
+        default:
+            return null;
+    }
+    return null;
+}
+function checkMaxValue(qItem, input, maxValue) {
+    switch (qItem.type) {
+        case 'integer':
+            if (typeof maxValue === 'number') {
+                if (parseInt(input) > maxValue) {
+                    return ValidationResult.maxValue;
+                }
+            }
+            break;
+        case 'decimal': {
+            const precision = getDecimalPrecision(qItem);
+            const decimalValue = precision
+                ? parseDecimalStringToFloat(input, precision)
+                : parseFloat(input);
+            if (typeof maxValue === 'number') {
+                if (decimalValue > maxValue) {
+                    return ValidationResult.maxValue;
+                }
+            }
+            break;
+        }
+        case 'date':
+            if (typeof maxValue === 'string') {
+                if (new Date(input) > new Date(maxValue)) {
+                    return ValidationResult.maxValue;
+                }
+            }
+            break;
+        case 'dateTime':
+            if (typeof maxValue === 'string') {
+                if (dayjs(input).isAfter(dayjs(maxValue))) {
+                    return ValidationResult.maxValue;
+                }
+            }
+            break;
+        default:
+            return null;
+    }
+    return null;
+}
+function createValidationOperationOutcome(error, qItem, qrItem, answerIndex, locationExpression, existingOperationOutcomeIssues = []) {
+    return {
+        resourceType: 'OperationOutcome',
+        issue: existingOperationOutcomeIssues.concat(createValidationOperationOutcomeIssue(error, qItem, qrItem, answerIndex, locationExpression))
+    };
+}
+function createValidationOperationOutcomeIssue(error, qItem, qrItem, answerIndex, locationExpression) {
+    var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l;
+    const errorCodeSystem = 'http://fhir.forms-lab.com/CodeSystem/errors';
+    let detailsText = '';
+    let fieldDisplayText = (_d = (_c = (_b = (_a = qrItem === null || qrItem === void 0 ? void 0 : qrItem.text) !== null && _a !== void 0 ? _a : getShortText(qItem)) !== null && _b !== void 0 ? _b : qItem === null || qItem === void 0 ? void 0 : qItem.text) !== null && _c !== void 0 ? _c : qItem.linkId) !== null && _d !== void 0 ? _d : qrItem.linkId;
+    if (!fieldDisplayText && fieldDisplayText.endsWith(':')) {
+        fieldDisplayText = fieldDisplayText.substring(0, fieldDisplayText.length - 1);
+    }
+    answerIndex = answerIndex !== null && answerIndex !== void 0 ? answerIndex : 0;
+    // create operationOutcomeIssue based on error
+    switch (error) {
+        case ValidationResult.required: {
+            if (qItem.type === 'group') {
+                detailsText = `${fieldDisplayText}: Mandatory group does not have answer(s)`;
+            }
+            else {
+                detailsText = `${fieldDisplayText}: Mandatory field does not have an answer`;
+            }
+            return {
+                severity: 'error',
+                code: 'required',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Required'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        case ValidationResult.regex: {
+            detailsText = `${fieldDisplayText}: The value '${getInputInString((_e = qrItem.answer) === null || _e === void 0 ? void 0 : _e[answerIndex])}' does not match the defined format.`;
+            if (structuredDataCapture.getEntryFormat(qItem)) {
+                detailsText += ` ${structuredDataCapture.getEntryFormat(qItem)}`;
+            }
+            return {
+                severity: 'error',
+                code: 'invalid',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Invalid format'
+                        }
+                    ],
+                    text: detailsText
+                },
+                diagnostics: (_f = getRegexString(qItem)) !== null && _f !== void 0 ? _f : undefined
+            };
+        }
+        case ValidationResult.minLength: {
+            detailsText = `${fieldDisplayText}: Expected the minimum value ${structuredDataCapture.getMinLength(qItem)} characters, received '${getInputInString((_g = qrItem.answer) === null || _g === void 0 ? void 0 : _g[answerIndex])}'`;
+            return {
+                severity: 'error',
+                code: 'business-rule',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Too short'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        case ValidationResult.maxLength: {
+            detailsText = `${fieldDisplayText}: Exceeded maximum of  ${qItem.maxLength} characters, received '${getInputInString((_h = qrItem.answer) === null || _h === void 0 ? void 0 : _h[answerIndex])}'`;
+            return {
+                severity: 'error',
+                code: 'business-rule',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Too long'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        case ValidationResult.maxDecimalPlaces: {
+            detailsText = `${fieldDisplayText}: Exceeded maximum decimal places ${structuredDataCapture.getMaxDecimalPlaces(qItem)}, received '${getInputInString((_j = qrItem.answer) === null || _j === void 0 ? void 0 : _j[answerIndex])}'`;
+            return {
+                severity: 'error',
+                code: 'business-rule',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Too precise'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        case ValidationResult.minValue: {
+            detailsText = `${fieldDisplayText}: Expected the minimum value ${getMinValue(qItem)}, received '${getInputInString((_k = qrItem.answer) === null || _k === void 0 ? void 0 : _k[answerIndex])}'`;
+            return {
+                severity: 'error',
+                code: 'business-rule',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Too small'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        case ValidationResult.maxValue: {
+            detailsText = `${fieldDisplayText}: Exceeded the maximum value ${getMaxValue(qItem)}, received '${getInputInString((_l = qrItem.answer) === null || _l === void 0 ? void 0 : _l[answerIndex])}'`;
+            return {
+                severity: 'error',
+                code: 'business-rule',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: error,
+                            display: 'Too big'
+                        }
+                    ],
+                    text: detailsText
+                }
+            };
+        }
+        // mark unknown issues as fatal
+        default: {
+            return {
+                severity: 'error',
+                code: 'unknown',
+                expression: [locationExpression],
+                details: {
+                    coding: [
+                        {
+                            system: errorCodeSystem,
+                            code: 'unknown',
+                            display: 'Unknown'
+                        }
+                    ]
+                }
+            };
+        }
+    }
+}
+//# sourceMappingURL=validateQuestionnaire.js.map

package/lib/src/utils/validateQuestionnaire.js.map

@@ -0,0 +1 @@
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package/lib/src/utils/valueSet.d.ts

@@ -0,0 +1,22 @@
+import type { Coding, Encounter, Expression, FhirResource, Patient, Practitioner, QuestionnaireItem, ValueSet } from 'fhir/r4';
+import type { FhirResourceString } from '../interfaces/populate.interface';
+import type { VariableXFhirQuery } from '../interfaces/variables.interface';
+import type { ValidateCodeResponse, ValueSetPromise } from '../interfaces/valueSet.interface';
+export declare function getTerminologyServerUrl(qItem: QuestionnaireItem): string | undefined;
+export declare function getValueSetPromise(url: string, terminologyServerUrl: string): Promise<ValueSet>;
+export declare function validateCodePromise(url: string, system: string, code: string, terminologyServerUrl: string): Promise<ValidateCodeResponse | null>;
+export declare function resolveValueSetPromises(valueSetPromises: Record<string, ValueSetPromise>): Promise<Record<string, ValueSetPromise>>;
+/**
+ * Sets an array of codings with the values from a valueSet
+ *
+ * @author Sean Fong
+ */
+export declare function getValueSetCodings(valueSet: ValueSet): Coding[];
+/**
+ * Evaluate valueSets in answerExpression with fhirpath
+ *
+ * @author Sean Fong
+ */
+export declare function evaluateAnswerExpressionValueSet(answerExpression: Expression, itemLevelVariables: Expression[], preprocessedCodings: Record<string, Coding[]>): Coding[];
+export declare function createValueSetToXFhirQueryVariableNameMap(variables: Record<string, VariableXFhirQuery>): Record<string, string>;
+export declare function getResourceFromLaunchContext(resourceType: FhirResourceString, patient: Patient | null, user: Practitioner | null, encounter: Encounter | null): FhirResource | null;