@aehrc/smart-forms-renderer 0.38.2 → 0.39.0

package/lib/tests/test-data/initialValueSample.js.map

@@ -0,0 +1 @@
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package/lib/tests/test-data/observationSample.d.ts

@@ -0,0 +1,4 @@
+import type { Observation, Questionnaire, QuestionnaireResponse } from 'fhir/r4';
+export declare const qObservationSample: Questionnaire;
+export declare const qrObservationSample: QuestionnaireResponse;
+export declare const observationResults: Observation[];

package/lib/tests/test-data/observationSample.js

@@ -0,0 +1,193 @@
+export const qObservationSample = {
+    resourceType: 'Questionnaire',
+    id: 'phq-2-questionnaire',
+    meta: {
+        versionId: '1',
+        lastUpdated: '2024-08-29T12:00:00Z'
+    },
+    title: 'PHQ-2 Depression Screening',
+    status: 'active',
+    date: '2024-08-29T12:00:00Z',
+    publisher: 'Konsulin',
+    description: 'Patient Health Questionnaire-2 (PHQ-2) for depression screening.',
+    subjectType: ['Patient'],
+    item: [
+        {
+            linkId: 'phq2-1',
+            text: 'Over the last 2 weeks, how often have you been bothered by little interest or pleasure in doing things?',
+            type: 'choice',
+            code: [
+                {
+                    system: 'http://snomed.info/sct',
+                    code: '28669007',
+                    display: 'Anhedonia'
+                }
+            ],
+            answerOption: [
+                {
+                    valueCoding: {
+                        code: '0',
+                        display: 'Not at all'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '1',
+                        display: 'Several days'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '2',
+                        display: 'More than half the days'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '3',
+                        display: 'Nearly every day'
+                    }
+                }
+            ]
+        },
+        {
+            linkId: 'phq2-2',
+            text: 'Over the last 2 weeks, how often have you been bothered by feeling down, depressed, or hopeless?',
+            type: 'choice',
+            code: [
+                {
+                    system: 'http://snomed.info/sct',
+                    code: '307077003',
+                    display: 'Feeling hopeless'
+                }
+            ],
+            answerOption: [
+                {
+                    valueCoding: {
+                        code: '0',
+                        display: 'Not at all'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '1',
+                        display: 'Several days'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '2',
+                        display: 'More than half the days'
+                    }
+                },
+                {
+                    valueCoding: {
+                        code: '3',
+                        display: 'Nearly every day'
+                    }
+                }
+            ]
+        }
+    ]
+};
+export const qrObservationSample = {
+    resourceType: 'QuestionnaireResponse',
+    id: 'phq2-response',
+    questionnaire: 'https://fhir.konsulin.care/fhir/Questionnaire/phq-2-questionnaire',
+    status: 'completed',
+    subject: {
+        reference: 'Patient/123'
+    },
+    authored: '2024-08-29T12:00:00Z',
+    item: [
+        {
+            linkId: 'phq2-1',
+            text: 'Over the last 2 weeks, how often have you been bothered by little interest or pleasure in doing things?',
+            answer: [
+                {
+                    valueCoding: {
+                        code: '2',
+                        display: 'More than half the days'
+                    }
+                }
+            ]
+        },
+        {
+            linkId: 'phq2-2',
+            text: 'Over the last 2 weeks, how often have you been bothered by feeling down, depressed, or hopeless?',
+            answer: [
+                {
+                    valueCoding: {
+                        code: '1',
+                        display: 'Several days'
+                    }
+                }
+            ]
+        }
+    ]
+};
+export const observationResults = [
+    {
+        resourceType: 'Observation',
+        id: 'obs-phq2-1',
+        status: 'final',
+        code: {
+            coding: [
+                {
+                    system: 'http://snomed.info/sct',
+                    code: '28669007',
+                    display: 'Anhedonia'
+                }
+            ]
+        },
+        subject: {
+            reference: 'Patient/123'
+        },
+        derivedFrom: [
+            {
+                reference: 'QuestionnaireResponse/phq2-response'
+            }
+        ],
+        effectiveDateTime: '2024-08-29T12:00:00Z',
+        valueCodeableConcept: {
+            coding: [
+                {
+                    code: '2',
+                    display: 'More than half the days'
+                }
+            ]
+        }
+    },
+    {
+        resourceType: 'Observation',
+        id: 'obs-phq2-2',
+        status: 'final',
+        code: {
+            coding: [
+                {
+                    system: 'http://snomed.info/sct',
+                    code: '307077003',
+                    display: 'Feeling hopeless'
+                }
+            ]
+        },
+        subject: {
+            reference: 'Patient/123'
+        },
+        derivedFrom: [
+            {
+                reference: 'QuestionnaireResponse/phq2-response'
+            }
+        ],
+        effectiveDateTime: '2024-08-29T12:00:00Z',
+        valueCodeableConcept: {
+            coding: [
+                {
+                    code: '1',
+                    display: 'Several days'
+                }
+            ]
+        }
+    }
+];
+//# sourceMappingURL=observationSample.js.map

package/lib/tests/test-data/observationSample.js.map

@@ -0,0 +1 @@
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package/lib/utils/answerExpression.d.ts

@@ -0,0 +1,18 @@
+import type { AnswerExpression } from '../interfaces/answerExpression.interface';
+import { type Expression, type QuestionnaireResponse, type QuestionnaireResponseItem } from 'fhir/r4';
+interface EvaluateInitialAnswerExpressionsParams {
+    initialResponse: QuestionnaireResponse;
+    initialResponseItemMap: Record<string, QuestionnaireResponseItem[]>;
+    answerExpressions: Record<string, AnswerExpression>;
+    variablesFhirPath: Record<string, Expression[]>;
+    existingFhirPathContext: Record<string, any>;
+}
+export declare function evaluateInitialAnswerExpressions(params: EvaluateInitialAnswerExpressionsParams): Promise<{
+    initialAnswerExpressions: Record<string, AnswerExpression>;
+    updatedFhirPathContext: Record<string, any>;
+}>;
+export declare function evaluateAnswerExpressions(fhirPathContext: Record<string, any>, answerExpressions: Record<string, AnswerExpression>): {
+    answerExpsIsUpdated: boolean;
+    updatedAnswerExpressions: Record<string, AnswerExpression>;
+};
+export {};

package/lib/utils/answerExpression.js

@@ -0,0 +1,133 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+import fhirpath from 'fhirpath';
+import fhirpath_r4_model from 'fhirpath/fhir-context/r4';
+import _isEqual from 'lodash/isEqual';
+import cloneDeep from 'lodash.clonedeep';
+import { emptyResponse } from './emptyResource';
+import { createFhirPathContext, evaluateTerminologyLinkIdVariables } from './fhirpath';
+export function evaluateInitialAnswerExpressions(params) {
+    return __awaiter(this, void 0, void 0, function* () {
+        const { initialResponse, initialResponseItemMap, answerExpressions, variablesFhirPath, existingFhirPathContext } = params;
+        // Return early if initialResponse is empty or there are no answer expressions to evaluate
+        if (_isEqual(initialResponse, cloneDeep(emptyResponse)) ||
+            Object.keys(answerExpressions).length === 0) {
+            return {
+                initialAnswerExpressions: answerExpressions,
+                updatedFhirPathContext: existingFhirPathContext
+            };
+        }
+        const initialAnswerExpressions = Object.assign({}, answerExpressions);
+        let updatedFhirPathContext = yield createFhirPathContext(initialResponse, initialResponseItemMap, variablesFhirPath, existingFhirPathContext);
+        // Perform initial evaluation of terminology variables
+        for (const linkId in variablesFhirPath) {
+            updatedFhirPathContext = yield evaluateTerminologyLinkIdVariables(linkId, variablesFhirPath, updatedFhirPathContext);
+        }
+        for (const linkId in initialAnswerExpressions) {
+            const answerExpression = initialAnswerExpressions[linkId];
+            try {
+                const result = fhirpath.evaluate({}, answerExpression.expression, updatedFhirPathContext, fhirpath_r4_model);
+                // Update calculatedExpressions if length of result array > 0
+                // Only update when current calcExpression value is different from the result, otherwise it will result in an infinite loop as per issue #733
+                if (result.length > 0 && !_isEqual(answerExpression.options, result)) {
+                    answerExpression.options = getAnswerOptionsFromResults(result);
+                    answerExpression.version = answerExpression.version + 1;
+                }
+                // Update calculatedExpression value to null if no result is returned
+                if (result.length === 0 && !!answerExpression.options) {
+                    // Only update if current options is not empty
+                    if (answerExpression.options.length > 0) {
+                        answerExpression.options = [];
+                        answerExpression.version = answerExpression.version + 1;
+                    }
+                }
+            }
+            catch (e) {
+                console.warn(e.message, `LinkId: ${linkId}\nExpression: ${answerExpression.options}`);
+            }
+            initialAnswerExpressions[linkId] = answerExpression;
+        }
+        return {
+            initialAnswerExpressions,
+            updatedFhirPathContext
+        };
+    });
+}
+export function evaluateAnswerExpressions(fhirPathContext, answerExpressions) {
+    const updatedAnswerExpressions = Object.assign({}, answerExpressions);
+    let isUpdated = false;
+    for (const linkId in answerExpressions) {
+        const answerExpression = answerExpressions[linkId];
+        try {
+            const result = fhirpath.evaluate({}, answerExpression.expression, fhirPathContext, fhirpath_r4_model);
+            // Update calculatedExpressions if length of result array > 0
+            // Only update when current calcExpression value is different from the result, otherwise it will result in an infinite loop as per issue #733
+            if (result.length > 0 && !_isEqual(answerExpression.options, result)) {
+                isUpdated = true;
+                answerExpression.options = getAnswerOptionsFromResults(result);
+                answerExpression.version = answerExpression.version + 1;
+            }
+            // Update calculatedExpression value to null if no result is returned
+            if (result.length === 0 && !!answerExpression.options) {
+                // Only update if current options is not empty
+                if (answerExpression.options.length > 0) {
+                    isUpdated = true;
+                    answerExpression.options = [];
+                    answerExpression.version = answerExpression.version + 1;
+                }
+            }
+        }
+        catch (e) {
+            console.warn(e.message, `LinkId: ${linkId}\nExpression: ${answerExpression.options}`);
+        }
+        updatedAnswerExpressions[linkId] = answerExpression;
+    }
+    return {
+        answerExpsIsUpdated: isUpdated,
+        updatedAnswerExpressions: updatedAnswerExpressions
+    };
+}
+function getAnswerOptionsFromResults(result) {
+    if (!Array.isArray(result)) {
+        return [];
+    }
+    return result
+        .map((item) => {
+        var _a;
+        if (item.system && item.code) {
+            return {
+                valueCoding: {
+                    system: item.system,
+                    code: item.code,
+                    display: (_a = item.display) !== null && _a !== void 0 ? _a : undefined
+                }
+            };
+        }
+        return item;
+    })
+        .filter((item) => typeof item === 'object');
+}
+//# sourceMappingURL=answerExpression.js.map

package/lib/utils/answerExpression.js.map

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package/lib/utils/calculatedExpression.js

@@ -23,7 +23,7 @@ import { getQrItemsIndex, mapQItemsIndex } from './mapItem';
 import { updateQrItemsInGroup } from './qrItem';
 import cloneDeep from 'lodash.clonedeep';
 import dayjs from 'dayjs';
-import { updateQuestionnaireResponse } from './updateQr';
+import { updateQuestionnaireResponse } from './genericRecursive';
 export function evaluateInitialCalculatedExpressions(params) {
     const { initialResponse, initialResponseItemMap, calculatedExpressions, variablesFhirPath, existingFhirPathContext } = params;
     // Return early if initialResponse is empty or there are no calculated expressions to evaluate

package/lib/utils/calculatedExpression.js.map

@@ -1 +1 @@
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+{"version":3,"file":"calculatedExpression.js","sourceRoot":"","sources":["../../src/utils/calculatedExpression.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;GAeG;AAGH,OAAO,QAAQ,MAAM,UAAU,CAAC;AAChC,OAAO,iBAAiB,MAAM,0BAA0B,CAAC;AAUzD,OAAO,QAAQ,MAAM,gBAAgB,CAAC;AACtC,OAAO,EAAE,aAAa,EAAE,MAAM,iBAAiB,CAAC;AAChD,OAAO,EAAE,qBAAqB,EAAE,MAAM,YAAY,CAAC;AACnD,OAAO,EAAE,eAAe,EAAE,cAAc,EAAE,MAAM,WAAW,CAAC;AAC5D,OAAO,EAAE,oBAAoB,EAAE,MAAM,UAAU,CAAC;AAChD,OAAO,SAAS,MAAM,kBAAkB,CAAC;AACzC,OAAO,KAAK,MAAM,OAAO,CAAC;AAC1B,OAAO,EAAE,2BAA2B,EAAE,MAAM,oBAAoB,CAAC;AAUjE,MAAM,UAAU,oCAAoC,CAClD,MAAkD;IAKlD,MAAM,EACJ,eAAe,EACf,sBAAsB,EACtB,qBAAqB,EACrB,iBAAiB,EACjB,uBAAuB,EACxB,GAAG,MAAM,CAAC;IAEX,8FAA8F;IAC9F,IACE,QAAQ,CAAC,eAAe,EAAE,SAAS,CAAC,aAAa,CAAC,CAAC;QACnD,MAAM,CAAC,IAAI,CAAC,qBAAqB,CAAC,CAAC,MAAM,KAAK,CAAC,EAC/C;QACA,OAAO;YACL,4BAA4B,EAAE,qBAAqB;YACnD,sBAAsB,EAAE,uBAAuB;SAChD,CAAC;KACH;IAED,MAAM,4BAA4B,qBAC7B,qBAAqB,CACzB,CAAC;IAEF,MAAM,sBAAsB,GAAG,qBAAqB,CAClD,eAAe,EACf,sBAAsB,EACtB,iBAAiB,EACjB,uBAAuB,CACxB,CAAC;IAEF,KAAK,MAAM,MAAM,IAAI,4BAA4B,EAAE;QACjD,MAAM,mBAAmB,GAAG,qBAAqB,CAAC,MAAM,CAAC,CAAC;QAE1D,KAAK,MAAM,cAAc,IAAI,mBAAmB,EAAE;YAChD,IAAI;gBACF,MAAM,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAC9B,EAAE,EACF,cAAc,CAAC,UAAU,EACzB,sBAAsB,EACtB,iBAAiB,CAClB,CAAC;gBAEF,kEAAkE;gBAClE,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE;oBACnE,cAAc,CAAC,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;iBAClC;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,EAAE,WAAW,MAAM,iBAAiB,cAAc,CAAC,UAAU,EAAE,CAAC,CAAC;aACxF;SACF;QAED,4BAA4B,CAAC,MAAM,CAAC,GAAG,mBAAmB,CAAC;KAC5D;IAED,OAAO;QACL,4BAA4B;QAC5B,sBAAsB;KACvB,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,6BAA6B,CAC3C,eAAoC,EACpC,qBAA6D;IAK7D,MAAM,4BAA4B,qBAC7B,qBAAqB,CACzB,CAAC;IAEF,IAAI,SAAS,GAAG,KAAK,CAAC;IACtB,KAAK,MAAM,MAAM,IAAI,qBAAqB,EAAE;QAC1C,MAAM,mBAAmB,GAAG,qBAAqB,CAAC,MAAM,CAAC,CAAC;QAE1D,KAAK,MAAM,cAAc,IAAI,mBAAmB,EAAE;YAChD,IAAI;gBACF,MAAM,MAAM,GAAG,QAAQ,CAAC,QAAQ,CAC9B,EAAE,EACF,cAAc,CAAC,UAAU,EACzB,eAAe,EACf,iBAAiB,CAClB,CAAC;gBAEF,6DAA6D;gBAC7D,6IAA6I;gBAC7I,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,IAAI,CAAC,QAAQ,CAAC,cAAc,CAAC,KAAK,EAAE,MAAM,CAAC,CAAC,CAAC,CAAC,EAAE;oBACnE,SAAS,GAAG,IAAI,CAAC;oBACjB,cAAc,CAAC,KAAK,GAAG,MAAM,CAAC,CAAC,CAAC,CAAC;iBAClC;gBAED,qEAAqE;gBACrE,IAAI,MAAM,CAAC,MAAM,KAAK,CAAC,IAAI,cAAc,CAAC,KAAK,KAAK,IAAI,EAAE;oBACxD,SAAS,GAAG,IAAI,CAAC;oBACjB,cAAc,CAAC,KAAK,GAAG,IAAI,CAAC;iBAC7B;aACF;YAAC,OAAO,CAAC,EAAE;gBACV,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,OAAO,EAAE,WAAW,MAAM,iBAAiB,cAAc,CAAC,UAAU,EAAE,CAAC,CAAC;aACxF;SACF;QAED,4BAA4B,CAAC,MAAM,CAAC,GAAG,mBAAmB,CAAC;KAC5D;IAED,OAAO;QACL,uBAAuB,EAAE,SAAS;QAClC,4BAA4B,EAAE,4BAA4B;KAC3D,CAAC;AACJ,CAAC;AAED,MAAM,UAAU,oCAAoC,CAClD,aAA4B,EAC5B,iBAAwC,EACxC,qBAA6D;IAE7D,2EAA2E;IAC3E,MAAM,+BAA+B,GAA2C,EAAE,CAAC;IACnF,KAAK,MAAM,MAAM,IAAI,qBAAqB,EAAE;QAC1C,MAAM,6BAA6B,GAAG,qBAAqB,CAAC,MAAM,CAAC,CAAC,MAAM,CACxE,CAAC,cAAc,EAAE,EAAE,CAAC,cAAc,CAAC,KAAK,KAAK,SAAS,CACvD,CAAC;QAEF,IAAI,6BAA6B,CAAC,MAAM,GAAG,CAAC,EAAE;YAC5C,+BAA+B,CAAC,MAAM,CAAC,GAAG,6BAA6B,CAAC;SACzE;KACF;IAED,OAAO,2BAA2B,CAChC,aAAa,EACb,iBAAiB,EACjB,gDAAgD,EAChD,+BAA+B,CAChC,CAAC;AACJ,CAAC;AAED,SAAS,gDAAgD,CACvD,KAAwB,EACxB,aAA6E,EAC7E,qBAA6D;;IAE7D,oBAAoB;IACpB,MAAM,kBAAkB,GAAG,KAAK,CAAC,OAAO,CAAC,aAAa,CAAC,CAAC;IACxD,IAAI,kBAAkB,EAAE;QACtB,OAAO,aAAa,CAAC;KACtB;IAED,MAAM,MAAM,GAAG,aAAa,CAAC;IAC7B,MAAM,WAAW,GAAG,KAAK,CAAC,IAAI,CAAC;IAC/B,IAAI,WAAW,IAAI,WAAW,CAAC,MAAM,GAAG,CAAC,EAAE;QACzC,MAAM,YAAY,GAAG,MAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,IAAI,mCAAI,EAAE,CAAC;QAExC,MAAM,QAAQ,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC;QACvC,MAAM,cAAc,GAAG,eAAe,CAAC,WAAW,EAAE,YAAY,EAAE,QAAQ,CAAC,CAAC;QAE5E,wCAAwC;QACxC,KAAK,MAAM,CAAC,KAAK,EAAE,UAAU,CAAC,IAAI,WAAW,CAAC,OAAO,EAAE,EAAE;YACvD,MAAM,kBAAkB,GAAG,cAAc,CAAC,KAAK,CAAC,CAAC;YAEjD,MAAM,yBAAyB,GAAG,gDAAgD,CAChF,UAAU,EACV,kBAAkB,aAAlB,kBAAkB,cAAlB,kBAAkB,GAAI,IAAI,EAC1B,qBAAqB,CACtB,CAAC;YAEF,0CAA0C;YAC1C,IAAI,KAAK,CAAC,OAAO,CAAC,yBAAyB,CAAC,EAAE;gBAC5C,SAAS;aACV;YAED,MAAM,kBAAkB,GAAG,yBAAyB,CAAC;YACrD,IAAI,kBAAkB,EAAE;gBACtB,oBAAoB,CAClB,kBAAkB,EAClB,IAAI,EACJ,MAAM,aAAN,MAAM,cAAN,MAAM,GAAI,EAAE,MAAM,EAAE,KAAK,CAAC,MAAM,EAAE,IAAI,EAAE,KAAK,CAAC,IAAI,EAAE,IAAI,EAAE,EAAE,EAAE,EAC9D,QAAQ,CACT,CAAC;aACH;SACF;QAED,OAAO,kBAAkB,CAAC,KAAK,EAAE,MAAM,EAAE,qBAAqB,CAAC,CAAC;KACjE;IAED,OAAO,mBAAmB,CAAC,KAAK,EAAE,MAAM,EAAE,qBAAqB,CAAC,CAAC;AACnE,CAAC;AAED,SAAS,6BAA6B,CACpC,KAAwB,EACxB,qBAA6D;;IAE7D,MAAM,sBAAsB,GAAG,MAAA,qBAAqB,CAAC,KAAK,CAAC,MAAM,CAAC,0CAAE,IAAI,CACtE,CAAC,cAAc,EAAE,EAAE,CAAC,cAAc,CAAC,IAAI,KAAK,MAAM,CACnD,CAAC;IAEF,IAAI,sBAAsB,IAAI,sBAAsB,CAAC,KAAK,EAAE;QAC1D,OAAO,kBAAkB,CAAC,KAAK,EAAE,sBAAsB,CAAC,KAAK,CAAC,CAAC;KAChE;IAED,OAAO;AACT,CAAC;AAED,SAAS,kBAAkB,CACzB,KAAwB,EACxB,MAAwC,EACxC,qBAA6D;IAE7D,MAAM,0BAA0B,GAAG,6BAA6B,CAAC,KAAK,EAAE,qBAAqB,CAAC,CAAC;IAE/F,6FAA6F;IAC7F,IAAI,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,MAAM,KAAI,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,MAAM,CAAC,MAAM,IAAG,CAAC,EAAE;QAC/C,OAAO,MAAM,aAAN,MAAM,cAAN,MAAM,GAAI,IAAI,CAAC;KACvB;IAED,IAAI,CAAC,0BAA0B,EAAE;QAC/B,OAAO,MAAM,aAAN,MAAM,cAAN,MAAM,GAAI,IAAI,CA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package/lib/utils/choice.d.ts

@@ -35,7 +35,7 @@ export declare function getQrChoiceValue(qrChoice: QuestionnaireResponseItem, re
  *
  * @author Sean Fong
  */
-export declare function updateChoiceCheckboxAnswers(changedValue: string, answers: QuestionnaireResponseItemAnswer[], options: QuestionnaireItemAnswerOption[], oldQrItem: QuestionnaireResponseItem, isMultiSelection: boolean): QuestionnaireResponseItem | null;
+export declare function updateChoiceCheckboxAnswers(changedValue: string, answers: QuestionnaireResponseItemAnswer[], options: QuestionnaireItemAnswerOption[], oldQrItem: QuestionnaireResponseItem, isMultiSelection: boolean, answerKey: string | undefined): QuestionnaireResponseItem | null;
 /**
  * Get choice orientation from its itemControl
  *

package/lib/utils/choice.js

@@ -111,7 +111,7 @@ export function getQrChoiceValue(qrChoice, returnNull) {
  *
  * @author Sean Fong
  */
-export function updateChoiceCheckboxAnswers(changedValue, answers, options, oldQrItem, isMultiSelection) {
+export function updateChoiceCheckboxAnswers(changedValue, answers, options, oldQrItem, isMultiSelection, answerKey) {
     // search for answer item of changedValue from list of answer options
     const newAnswer = findInAnswerOptions(options, changedValue);
     if (!newAnswer) {
@@ -125,12 +125,14 @@ export function updateChoiceCheckboxAnswers(changedValue, answers, options, oldQ
         if (updatedAnswers.length === answers.length) {
             updatedAnswers.push(newAnswer);
         }
-        return Object.assign(Object.assign({}, oldQrItem), { answer: updatedAnswers });
+        const updatedAnswersWithKey = updatedAnswers.map((answer) => (Object.assign(Object.assign({}, answer), { id: answerKey })));
+        return Object.assign(Object.assign({}, oldQrItem), { answer: updatedAnswersWithKey });
     }
     // Process single selection
     // If answer already exists, remove it from the array. Otherwise, add it to the array
     const answerExists = answers.some((answer) => JSON.stringify(answer) === JSON.stringify(newAnswer));
-    return answerExists ? Object.assign(Object.assign({}, oldQrItem), { answer: [] }) : Object.assign(Object.assign({}, oldQrItem), { answer: [newAnswer] });
+    return answerExists
+        ? Object.assign(Object.assign({}, oldQrItem), { answer: [] }) : Object.assign(Object.assign({}, oldQrItem), { answer: [Object.assign(Object.assign({}, newAnswer), { id: answerKey })] });
 }
 /**
  * Get choice orientation from its itemControl

package/lib/utils/choice.js.map

@@ -1 +1 @@
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package/lib/utils/dynamicValueSet.d.ts

@@ -0,0 +1,5 @@
+import { DynamicValueSet } from '../interfaces/valueSet.interface';
+export declare function evaluateDynamicValueSets(fhirPathContext: Record<string, any>, dynamicValueSets: Record<string, DynamicValueSet>): {
+    dynamicValueSetsIsUpdated: boolean;
+    updatedDynamicValueSets: Record<string, DynamicValueSet>;
+};

package/lib/utils/dynamicValueSet.js

@@ -0,0 +1,96 @@
+/*
+ * Copyright 2024 Commonwealth Scientific and Industrial Research
+ * Organisation (CSIRO) ABN 41 687 119 230.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+import fhirpath from 'fhirpath';
+import fhirpath_r4_model from 'fhirpath/fhir-context/r4';
+import cloneDeep from 'lodash.clonedeep';
+import _isEqual from 'lodash/isEqual';
+export function evaluateDynamicValueSets(fhirPathContext, dynamicValueSets) {
+    var _a;
+    const updatedDynamicValueSets = cloneDeep(dynamicValueSets);
+    let isUpdated = false;
+    for (const linkId in updatedDynamicValueSets) {
+        const dynamicValueSet = updatedDynamicValueSets[linkId];
+        const completeResource = dynamicValueSet.sourceResource;
+        const valueSetComposeInclude = (_a = completeResource.compose) === null || _a === void 0 ? void 0 : _a.include;
+        if (valueSetComposeInclude && valueSetComposeInclude.length > 0) {
+            for (const include of valueSetComposeInclude) {
+                if (!include.filter) {
+                    continue;
+                }
+                // There are filters present, check for fhirpath embeddings
+                const fhirPathEmbeddingsMap = {};
+                for (const filter of include.filter) {
+                    const filterValue = filter.value;
+                    if (filterValue.includes('{{') && filterValue.includes('}}')) {
+                        if (filterValue) {
+                            for (const embedding of readFhirPathEmbeddingsFromStr(filterValue)) {
+                                if (embedding) {
+                                    fhirPathEmbeddingsMap[embedding] = '';
+                                }
+                            }
+                        }
+                    }
+                }
+                const evaluatedFhirPathEmbeddingsMap = evaluateFhirPathEmbeddings(fhirPathEmbeddingsMap, fhirPathContext);
+                const evaluatedFhirPathEmbeddingsTuple = Object.entries(evaluatedFhirPathEmbeddingsMap).filter(([, value]) => value != '');
+                for (const filter of include.filter) {
+                    evaluatedFhirPathEmbeddingsTuple.forEach(([embedding, value]) => {
+                        const filterValue = filter.value;
+                        const pattern = new RegExp(`{{%${embedding}}}`, 'g');
+                        filter.value = filterValue.replace(pattern, value);
+                    });
+                }
+            }
+        }
+        // Complete resource has been updated, update the dynamicValueSet object
+        if (!_isEqual(dynamicValueSets[linkId].completeResource, completeResource)) {
+            isUpdated = true;
+            // If source response same as the complete resource, embeddings are not replaced, therefore ValueSet is not complete
+            updatedDynamicValueSets[linkId] = {
+                sourceResource: dynamicValueSets[linkId].sourceResource,
+                completeResource: dynamicValueSet.sourceResource,
+                version: dynamicValueSet.version + 1,
+                isComplete: !_isEqual(dynamicValueSets[linkId].sourceResource, completeResource)
+            };
+        }
+    }
+    // after that we need to update the dynamicvalueset object - iscomplete so that we can use it in useMemo - or potentially updated the version of the dynamic updatedcount
+    return {
+        dynamicValueSetsIsUpdated: isUpdated,
+        updatedDynamicValueSets: updatedDynamicValueSets
+    };
+}
+function evaluateFhirPathEmbeddings(fhirPathEmbeddingsMap, fhirPathContext) {
+    // evaluate fhirpath embeddings within map
+    Object.keys(fhirPathEmbeddingsMap).forEach((embedding) => {
+        try {
+            const result = fhirpath.evaluate({}, `%${embedding}`, fhirPathContext, fhirpath_r4_model)[0];
+            if (result !== undefined && result !== null) {
+                fhirPathEmbeddingsMap[embedding] = result;
+            }
+        }
+        catch (e) {
+            console.warn(e);
+        }
+    });
+    return fhirPathEmbeddingsMap;
+}
+const FHIRPATH_EMBEDDING_REGEX = /{{%(.*?)}}/g;
+function readFhirPathEmbeddingsFromStr(expression) {
+    return [...expression.matchAll(FHIRPATH_EMBEDDING_REGEX)].map((match) => { var _a; return (_a = match[1]) !== null && _a !== void 0 ? _a : ''; });
+}
+//# sourceMappingURL=dynamicValueSet.js.map

package/lib/utils/dynamicValueSet.js.map

@@ -0,0 +1 @@
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package/lib/utils/extractObservation.d.ts

@@ -0,0 +1,9 @@
+import type { CodeableConcept, Observation, Questionnaire, QuestionnaireItem, QuestionnaireResponse, QuestionnaireResponseItemAnswer } from 'fhir/r4';
+/**
+ * Extract an array of Observations from a QuestionnaireResponse and its source Questionnaire.
+ * @see https://build.fhir.org/ig/HL7/sdc/extraction.html#observation-based-extraction
+ *
+ * @author Riza Nafis
+ */
+export declare function extractObservationBased(questionnaire: Questionnaire, questionnaireResponse: QuestionnaireResponse): Observation[];
+export declare function createObservation(questionnaireItem: QuestionnaireItem, questionnaireResponse: QuestionnaireResponse, answer: QuestionnaireResponseItemAnswer, categories: CodeableConcept[]): Observation;