@aehrc/smart-forms-renderer 0.35.5 → 0.35.8

package/lib/utils/fhirpathAsyncUtils/fhirpath-async.js

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+var __awaiter = (this && this.__awaiter) || function (thisArg, _arguments, P, generator) {
+    function adopt(value) { return value instanceof P ? value : new P(function (resolve) { resolve(value); }); }
+    return new (P || (P = Promise))(function (resolve, reject) {
+        function fulfilled(value) { try { step(generator.next(value)); } catch (e) { reject(e); } }
+        function rejected(value) { try { step(generator["throw"](value)); } catch (e) { reject(e); } }
+        function step(result) { result.done ? resolve(result.value) : adopt(result.value).then(fulfilled, rejected); }
+        step((generator = generator.apply(thisArg, _arguments || [])).next());
+    });
+};
+// import type { Model, Path, UserInvocationTable } from 'fhirpath';
+import fhirpath from 'fhirpath';
+import { CreateOperationOutcome, logMessage } from './outcome-utils';
+// --------------------------------------------------------------------------
+// From: https://github.com/brianpos/fhirpathjs-async-poc/commit/950475900d09bf399574c24f142f3eeae1552fe6
+// Forked from: https://github.com/brianpos/fhirpathjs-async-poc
+// --------------------------------------------------------------------------
+// The concept of this POC is to demonstrate an approach to perform some
+// async based methods as functions inside the fhirpath engine without
+// converting the entire engine to process things asynchronously.
+// e.g. Terminology functions such as memberOf, subsumes, or resolve()
+//
+// The basic gist is:
+// * Perform an initial evaluation in sync mode
+// * when encountering any method that requires async execution
+//    - queue the required call
+//    - return a null result
+//    - continue processing the rest of the expression.
+// * If no async calls where encountered the result is returned immediately.
+// * Process all the encountered async calls and stash the results.
+// * Re-evaluate the expression from the start
+//    - when encountering the async methods again, inject the resolved results and continue processing.
+// If there were no additional async methods encountered, return the result.
+// otherwise, repeat the process until all async calls are resolved.
+// --------------------------------------------------------------------------
+// Open question: Should the async requests have access to the other potential results?
+// Reason: That would enable the result from one function to be accessed in another function.
+// --------------------------------------------------------------------------
+/** Global debug variable to permit the logger to write information messages
+ to the OperationOutcome and console
+ */
+export const debugAsyncFhirpath = true;
+/**
+ * Evaluate a FHIRPath expression asynchronously
+ * @param fhirData FHIR resource to run the FHIRPath expression against
+ * @param path FHIRPath expression to evaluate (string or Path object)
+ * @param context Environment to evaluate the expression in, mostly variables
+ * @param model which fhir version to use (r4/r4b/r5)
+ * @returns the result of the evaluation
+ */
+export function evaluateFhirpathAsync(fhirData, path, context, model) {
+    return __awaiter(this, void 0, void 0, function* () {
+        let results = [];
+        const outcome = {
+            resourceType: 'OperationOutcome',
+            issue: []
+        };
+        const asyncCallsRequired = new Map();
+        let requiresAsyncProcessing = false;
+        // introduce a custom function for resolve into the options
+        // https://github.com/HL7/fhirpath.js/?tab=readme-ov-file#user-defined-functions
+        // https://github.com/HL7/fhirpath.js/blob/5428ef8be766301658215ef7ed241c8a1666a980/index.d.ts#L86
+        const userInvocationTable = {
+            expand: {
+                fn: (inputs, valueSet, params) => inputs
+                    .map((value) => {
+                    var _a, _b;
+                    if (Array.isArray(valueSet)) {
+                        valueSet = valueSet[0];
+                    }
+                    let key = createIndexKeyExpand(valueSet, params);
+                    if (key) {
+                        key = 'Expand:' + key;
+                        if ((_a = asyncCallsRequired.get(key)) === null || _a === void 0 ? void 0 : _a.evaluationCompleted) {
+                            logMessage(debugAsyncFhirpath, outcome, '  using cached result for: ', key);
+                            return (_b = asyncCallsRequired.get(key)) === null || _b === void 0 ? void 0 : _b.result;
+                        }
+                        const details = {
+                            evaluationCompleted: false,
+                            asyncFunction: expandAsync,
+                            value: value,
+                            valueSet: valueSet,
+                            params: params
+                        };
+                        asyncCallsRequired.set(key, details);
+                        logMessage(debugAsyncFhirpath, outcome, '  requires async evaluation for: ', key);
+                        requiresAsyncProcessing = true;
+                        return undefined;
+                    }
+                })
+                    .filter((v) => v !== undefined),
+                arity: { 1: ['Any'], 2: ['Any', 'String'] }
+            },
+            resolve: {
+                fn: (inputs) => inputs
+                    .map((reference) => {
+                    var _a, _b;
+                    let key = createIndexKeyResolve(reference);
+                    if (key) {
+                        key = 'Resolve:' + key;
+                        if ((_a = asyncCallsRequired.get(key)) === null || _a === void 0 ? void 0 : _a.evaluationCompleted) {
+                            logMessage(debugAsyncFhirpath, outcome, '  using cached result for: ', key);
+                            return (_b = asyncCallsRequired.get(key)) === null || _b === void 0 ? void 0 : _b.result;
+                        }
+                        const details = {
+                            evaluationCompleted: false,
+                            asyncFunction: resolveAsync,
+                            value: reference
+                        };
+                        asyncCallsRequired.set(key, details);
+                        logMessage(debugAsyncFhirpath, outcome, '  requires async evaluation for: ', key);
+                        requiresAsyncProcessing = true;
+                    }
+                    return undefined;
+                })
+                    .filter((v) => v !== undefined),
+                arity: { 0: [] }
+            },
+            memberOf: {
+                fn: (inputs, valueSet) => {
+                    const output = inputs
+                        .map((codeData) => {
+                        var _a, _b;
+                        let key = createIndexKeyMemberOf(codeData, valueSet);
+                        if (key) {
+                            key = 'MemberOf:' + key;
+                            if ((_a = asyncCallsRequired.get(key)) === null || _a === void 0 ? void 0 : _a.evaluationCompleted) {
+                                logMessage(debugAsyncFhirpath, outcome, '  using cached result for: ', key);
+                                return (_b = asyncCallsRequired.get(key)) === null || _b === void 0 ? void 0 : _b.result;
+                            }
+                            const details = {
+                                evaluationCompleted: false,
+                                asyncFunction: memberOfAsync,
+                                value: codeData,
+                                valueSet: valueSet
+                            };
+                            asyncCallsRequired.set(key, details);
+                            logMessage(debugAsyncFhirpath, outcome, '  requires async evaluation for: ', key);
+                            requiresAsyncProcessing = true;
+                        }
+                        return undefined;
+                    })
+                        .filter((v) => v !== undefined);
+                    return output;
+                },
+                arity: { 1: ['String'] }
+            }
+        };
+        const options = {
+            userInvocationTable: userInvocationTable
+        };
+        let iterations = 0;
+        do {
+            context = Object.assign(Object.assign({}, context), { resource: fhirData, rootResource: fhirData, terminologies: {} });
+            iterations++;
+            // Perform the async calls required (none first time in)
+            if (asyncCallsRequired.size > 0) {
+                // resolve the async calls
+                const asyncPromises = [];
+                for (const key of asyncCallsRequired.keys()) {
+                    const details = asyncCallsRequired.get(key);
+                    if (details && !details.evaluationCompleted) {
+                        // perform the async call to check for the memberOf status
+                        logMessage(debugAsyncFhirpath, outcome, '  performing async request for: ', key);
+                        asyncPromises.push(details.asyncFunction(outcome, details));
+                    }
+                }
+                if (asyncPromises.length > 0)
+                    yield Promise.all(asyncPromises);
+                requiresAsyncProcessing = false;
+            }
+            // Evaluate the expression
+            try {
+                results = fhirpath.evaluate(fhirData, path, context, model, options);
+            }
+            catch (err) {
+                console.log(err);
+                if (err.message) {
+                    throw CreateOperationOutcome('fatal', 'exception', err.message);
+                }
+            }
+        } while (requiresAsyncProcessing && iterations < 10); // bound the number of iterations
+        if (iterations > 1) {
+            logMessage(debugAsyncFhirpath, outcome, 'total iterations', iterations);
+        }
+        return results;
+    });
+}
+/**
+ * Create an Index Key for the expand function
+ * @param valueSet
+ * @param params
+ * @returns
+ */
+function createIndexKeyExpand(valueSet, params) {
+    var _a, _b;
+    // input value is ignored since expand() is supposed to be called with a %terminologies fhirpath object
+    const vs = valueSet;
+    if (vs.resourceType === 'ValueSet') {
+        const valueSetId = (_b = (_a = vs.id) !== null && _a !== void 0 ? _a : vs.url) !== null && _b !== void 0 ? _b : '';
+        return params
+            ? ' terminologies - ' + valueSetId + ' - ' + params
+            : 'terminologies - ' + valueSetId;
+    }
+    if (typeof valueSet === 'string') {
+        return params ? ' terminologies - ' + valueSet + ' - ' + params : 'terminologies - ' + valueSet;
+    }
+    return undefined;
+}
+/**
+ * Perform the actual async expand evaluation
+ * @param details parameters which is actually a ExpandUserData structure
+ */
+function expandAsync(outcome, details) {
+    var _a;
+    return __awaiter(this, void 0, void 0, function* () {
+        // perform the async call to check for the memberOf status
+        const typedData = details;
+        try {
+            const httpHeaders = {
+                Accept: 'application/fhir+json; charset=utf-8'
+            };
+            const httpPostHeaders = {
+                Accept: 'application/fhir+json; charset=utf-8',
+                'Content-Type': 'application/fhir+json; charset=utf-8'
+            };
+            let myHeaders = new Headers(httpHeaders);
+            const requestUrl = 'https://r4.ontoserver.csiro.au/fhir/ValueSet/$expand';
+            let response;
+            const valueSet = typedData.valueSet;
+            if (valueSet.resourceType === 'ValueSet') {
+                const parameters = {
+                    resourceType: 'Parameters',
+                    parameter: [
+                        {
+                            name: 'valueSet',
+                            resource: valueSet
+                        }
+                    ]
+                };
+                // TODO turn typedData.params into a URLSearchParams object and into $expand params
+                myHeaders = new Headers(httpPostHeaders);
+                response = yield fetch(requestUrl, {
+                    method: 'POST',
+                    headers: myHeaders,
+                    body: JSON.stringify(parameters)
+                });
+            }
+            else if (typeof typedData.valueSet === 'string') {
+                const additionalParams = (_a = typedData.params) !== null && _a !== void 0 ? _a : '';
+                response = yield fetch(`${requestUrl}?url=${typedData.valueSet}&${additionalParams}`, {
+                    headers: myHeaders
+                });
+            }
+            if (response) {
+                const resultJson = yield response.json();
+                const valueSet = resultJson;
+                if (valueSet.resourceType === 'ValueSet') {
+                    details.evaluationCompleted = true;
+                    details.result = valueSet;
+                }
+                const outcomeResult = resultJson;
+                if (outcomeResult && outcomeResult.issue) {
+                    details.evaluationCompleted = true;
+                    throw outcomeResult; // should we be throwing here?
+                }
+            }
+        }
+        catch (err) {
+            console.log(err);
+            if (err.resourceType === 'OperationOutcome') {
+                throw err;
+            }
+            details.evaluationCompleted = true;
+            const key = createIndexKeyExpand(typedData.valueSet, typedData.params);
+            throw CreateOperationOutcome('error', 'exception', 'Failed to check membership: ' + key, undefined, err.message);
+        }
+    });
+}
+/**
+ * Create an Index Key for the memberOf function
+ * @param value
+ * @returns
+ */
+function createIndexKeyResolve(value) {
+    if (typeof value === 'string')
+        return value;
+    if (valueIsReference(value))
+        return value.reference;
+    return value;
+}
+function valueIsReference(value) {
+    return !!value.reference;
+}
+/**
+ * Perform the actual async member of evaluation
+ * @param details parameters which is actually a MemberOfUserData structure
+ */
+function resolveAsync(outcome, details) {
+    return __awaiter(this, void 0, void 0, function* () {
+        // perform the async call to check for the memberOf status
+        const typedData = details;
+        const URL = createIndexKeyResolve(typedData.value);
+        if (URL) {
+            try {
+                const httpHeaders = {
+                    Accept: 'application/fhir+json; charset=utf-8'
+                };
+                const myHeaders = new Headers(httpHeaders);
+                const response = yield fetch(URL, { headers: myHeaders });
+                const resultJson = yield response.json();
+                console.log(resultJson);
+                details.result = resultJson;
+                details.evaluationCompleted = true;
+            }
+            catch (err) {
+                console.log(err);
+                details.result = undefined; // not found!
+                details.evaluationCompleted = true;
+                const newOutcome = CreateOperationOutcome('error', 'exception', 'Failed to resolve reference: ' + URL, undefined, err.message);
+                throw newOutcome;
+            }
+        }
+    });
+}
+/**
+ * Create an Index Key for the memberOf function
+ * @param value
+ * @param valueset
+ * @returns
+ */
+function createIndexKeyMemberOf(value, valueset) {
+    if (typeof value === 'string') {
+        return value + ' - ' + valueset;
+    }
+    const coding = value;
+    if (coding.code) {
+        return coding.system + '|' + coding.code + ' - ' + valueset;
+    }
+    const cc = value;
+    if (cc.coding) {
+        // return the same as for coding by joining each of the codings with a comma
+        return cc.coding.map((c) => c.system + '|' + c.code).join(',') + ' - ' + valueset;
+    }
+    return undefined;
+}
+/**
+ * Perform the actual async member of evaluation
+ * @param details parameters which is actually a MemberOfUserData structure
+ */
+function memberOfAsync(outcome, details) {
+    var _a, _b;
+    return __awaiter(this, void 0, void 0, function* () {
+        // perform the async call to check for the memberOf status
+        const typedData = details;
+        try {
+            const httpHeaders = {
+                Accept: 'application/fhir+json; charset=utf-8'
+            };
+            const httpPostHeaders = {
+                Accept: 'application/fhir+json; charset=utf-8',
+                'Content-Type': 'application/fhir+json; charset=utf-8'
+            };
+            let myHeaders = new Headers(httpHeaders);
+            const requestUrl = 'https://r4.ontoserver.csiro.au/fhir/ValueSet/$validate-code';
+            let response;
+            let cc = typedData.value;
+            if (cc.coding) {
+                const parameters = {
+                    resourceType: 'Parameters',
+                    parameter: [
+                        {
+                            name: 'url',
+                            valueUri: typedData.valueSet
+                        },
+                        {
+                            name: 'codeableConcept',
+                            valueCodeableConcept: cc
+                        }
+                    ]
+                };
+                myHeaders = new Headers(httpPostHeaders);
+                response = yield fetch(requestUrl, {
+                    method: 'POST',
+                    headers: myHeaders,
+                    body: JSON.stringify(parameters)
+                });
+            }
+            else if (typeof typedData.value === 'string') {
+                const queryParams = new URLSearchParams({
+                    url: typedData.valueSet,
+                    code: typedData.value
+                });
+                response = yield fetch(`${requestUrl}?${queryParams.toString()}`, { headers: myHeaders });
+            }
+            else {
+                const coding = typedData.value;
+                if (coding.code) {
+                    const queryParams = new URLSearchParams({
+                        url: (_a = typedData.valueSet) !== null && _a !== void 0 ? _a : '',
+                        system: (_b = coding.system) !== null && _b !== void 0 ? _b : '',
+                        code: coding.code
+                    });
+                    response = yield fetch(`${requestUrl}?${queryParams.toString()}`, { headers: myHeaders });
+                }
+            }
+            if (response) {
+                const resultJson = yield response.json();
+                const params = resultJson;
+                if (params && params.parameter) {
+                    const param = params.parameter.find((p) => p.name === 'result');
+                    if (param) {
+                        details.evaluationCompleted = true;
+                        details.result = param.valueBoolean;
+                    }
+                }
+                const outcomeResult = resultJson;
+                if (outcomeResult && outcomeResult.issue) {
+                    details.evaluationCompleted = true;
+                    throw outcomeResult; // should we be throwing here?
+                }
+            }
+        }
+        catch (err) {
+            console.log(err);
+            details.evaluationCompleted = true;
+            const key = createIndexKeyMemberOf(typedData.value, typedData.valueSet);
+            throw CreateOperationOutcome('error', 'exception', 'Failed to check membership: ' + key, undefined, err.message);
+        }
+    });
+}
+//# sourceMappingURL=fhirpath-async.js.map

package/lib/utils/fhirpathAsyncUtils/fhirpath-async.js.map

@@ -0,0 +1 @@
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package/lib/utils/fhirpathAsyncUtils/outcome-utils.d.ts

@@ -0,0 +1,3 @@
+import type { Coding, OperationOutcome } from 'fhir/r4b';
+export declare function CreateOperationOutcome(severity: 'error' | 'fatal' | 'warning' | 'information', code: 'invalid' | 'structure' | 'required' | 'value' | 'invariant' | 'security' | 'login' | 'unknown' | 'expired' | 'forbidden' | 'suppressed' | 'processing' | 'not-supported' | 'duplicate' | 'multiple-matches' | 'not-found' | 'deleted' | 'too-long' | 'code-invalid' | 'extension' | 'too-costly' | 'business-rule' | 'conflict' | 'transient' | 'lock-error' | 'no-store' | 'exception' | 'timeout' | 'incomplete' | 'throttled' | 'informational', message: string, coding?: Coding, diagnostics?: string): fhir4b.OperationOutcome;
+export declare function logMessage(enabled: boolean, outcome: OperationOutcome, message: string, data?: any): void;

package/lib/utils/fhirpathAsyncUtils/outcome-utils.js

@@ -0,0 +1,41 @@
+// --------------------------------------------------------------------------
+// From: https://github.com/brianpos/fhirpathjs-async-poc/commit/950475900d09bf399574c24f142f3eeae1552fe6
+// Forked from: https://github.com/brianpos/fhirpathjs-async-poc
+// --------------------------------------------------------------------------
+export function CreateOperationOutcome(severity, code, message, coding, diagnostics) {
+    var result = {
+        resourceType: 'OperationOutcome',
+        issue: []
+    };
+    var issue = {
+        severity: severity,
+        code: code,
+        details: { text: message }
+    };
+    if (coding && issue.details)
+        issue.details.coding = [coding];
+    if (diagnostics)
+        issue.diagnostics = diagnostics;
+    result.issue.push(issue);
+    return result;
+}
+export function logMessage(enabled, outcome, message, data) {
+    if (enabled) {
+        // and append it into the outcome issues
+        var issue = {
+            severity: 'information',
+            code: 'informational',
+            details: { text: message }
+        };
+        outcome.issue.push(issue);
+        if (typeof data === 'string' || typeof data === 'number' || typeof data === 'boolean')
+            issue.details.text += '' + data;
+        if (data) {
+            if (typeof data === 'string')
+                issue.diagnostics = data;
+            else
+                issue.diagnostics = JSON.stringify(data);
+        }
+    }
+}
+//# sourceMappingURL=outcome-utils.js.map

package/lib/utils/fhirpathAsyncUtils/outcome-utils.js.map

@@ -0,0 +1 @@
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package/lib/utils/fhirpathAsyncUtils/test-questionnaire.d.ts

@@ -0,0 +1 @@
+export {};