@aehrc/smart-forms-renderer 0.35.5 → 0.35.6

package/src/utils/fhirpathAsyncUtils/test-questionnaire.ts

@@ -0,0 +1,383 @@
+import { Questionnaire } from 'fhir/r4';
+
+const testQuestionnaire: Questionnaire = {
+  resourceType: 'Questionnaire',
+  id: 'CalculatedExpressionCvdRiskCalculatorPrepop',
+  meta: {
+    versionId: '1',
+    lastUpdated: '2024-06-11T10:15:22.026+00:00',
+    source: '#CwlqsoGwV8CY9l7l'
+  },
+  extension: [
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'Condition',
+        language: 'application/x-fhir-query',
+        expression: 'Condition?patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsTobaccoSmokingStatus',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=72166-2&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsBodyHeight',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=8302-2&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsBodyWeight',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=29463-7&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsHeadCircumference',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=9843-4&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsWaistCircumference',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=8280-0&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsBloodPressure',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=85354-9&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsHeartRate',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=8867-4&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsTotalCholesterol',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=14647-2&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/StructureDefinition/variable',
+      valueExpression: {
+        name: 'ObsHDLCholesterol',
+        language: 'application/x-fhir-query',
+        expression: 'Observation?code=14646-4&_count=1&_sort=-date&patient={{%patient.id}}'
+      }
+    },
+    {
+      url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext',
+      extension: [
+        {
+          url: 'name',
+          valueCoding: {
+            system: 'http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext',
+            code: 'patient'
+          }
+        },
+        {
+          url: 'type',
+          valueCode: 'Patient'
+        },
+        {
+          url: 'description',
+          valueString: 'The patient that is to be used to pre-populate the form'
+        }
+      ]
+    }
+  ],
+  contained: [
+    {
+      resourceType: 'ValueSet',
+      id: 'MedicalHistory',
+      url: 'https://smartforms.csiro.au/ig/ValueSet/MedicalHistory',
+      name: 'MedicalHistory',
+      title: 'Medical History',
+      status: 'draft',
+      experimental: false,
+      description:
+        'The Medical History value set includes values that may be used to represent medical history, operations and hospital admissions.',
+      compose: {
+        include: [
+          {
+            system: 'http://snomed.info/sct',
+            filter: [
+              {
+                property: 'constraint',
+                op: '=',
+                value:
+                  '^32570581000036105|Problem/Diagnosis reference set| OR ^32570141000036105|Procedure foundation reference set|'
+              }
+            ]
+          }
+        ]
+      }
+    }
+  ],
+  url: 'https://smartforms.csiro.au/docs/sdc/population/calculated-expression-2',
+  version: '0.1.0',
+  name: 'CalculatedExpressionCvdRiskCalculatorPrepop',
+  title: 'Calculated Expression CVD Risk Calculator - Pre-population',
+  status: 'draft',
+  date: '2024-05-01',
+  publisher: 'AEHRC CSIRO',
+  item: [
+    {
+      extension: [
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'female',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='gender').answer.value.code='female', 1, 0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'age',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='patient-age').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdAge',
+            language: 'text/fhirpath',
+            expression: 'iif(%age > 74, 74, iif(%age < 35, 35, %age))'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'systolicBP',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='systolic-blood-pressure').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'smoker',
+            language: 'text/fhirpath',
+            expression:
+              "iif(item.where(linkId='smoking-status').answer.value.code='77176002', 1, 0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'totalCh',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='total-cholesterol').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'hdl',
+            language: 'text/fhirpath',
+            expression: "item.where(linkId='hdl-cholesterol').answer.value"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'diabetes',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='has-diabetes').answer.value = true,1,0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'ecgLvh',
+            language: 'text/fhirpath',
+            expression: "iif(item.where(linkId='ecg-lvh').answer.value = true,1,0)"
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cBase',
+            language: 'text/fhirpath',
+            expression: '18.8144'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cFemale',
+            language: 'text/fhirpath',
+            expression: '%female * -1.2146'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cAge',
+            language: 'text/fhirpath',
+            expression: '%cvdAge.ln() * -1.8443'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cAgeFemale',
+            language: 'text/fhirpath',
+            expression: '%female * %cvdAge.ln() * 0.3668'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cSBP',
+            language: 'text/fhirpath',
+            expression: '%systolicBP.ln() * -1.4032'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cSmoker',
+            language: 'text/fhirpath',
+            expression: '%smoker * -0.3899'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cTcHdl',
+            language: 'text/fhirpath',
+            expression: '(%totalCh / %hdl).ln() * -0.539'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cDiabetes',
+            language: 'text/fhirpath',
+            expression: '%diabetes * -0.3036'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cDiabetesFemale',
+            language: 'text/fhirpath',
+            expression: '%female * %diabetes * -0.1697'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cEcgLvh',
+            language: 'text/fhirpath',
+            expression: '%ecgLvh * -0.3362'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'sumOfCoeffs',
+            language: 'text/fhirpath',
+            expression:
+              '%cBase + %cFemale + %cAge + %cAgeFemale + %cSBP + %cSmoker + %cTcHdl + %cDiabetes + %cDiabetesFemale + %cEcgLvh'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdScale',
+            language: 'text/fhirpath',
+            expression: '(0.6536 + (%sumOfCoeffs * -0.2402)).exp()'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdU',
+            language: 'text/fhirpath',
+            expression: '(5.ln()-%sumOfCoeffs)/%cvdScale'
+          }
+        },
+        {
+          url: 'http://hl7.org/fhir/StructureDefinition/variable',
+          valueExpression: {
+            name: 'cvdScore',
+            language: 'text/fhirpath',
+            expression: '(1 - (%cvdU.exp()*-1).exp()) * 100'
+          }
+        }
+      ],
+      linkId: 'scenario-2',
+      text: "Request for X-Ray Right Foot as 'Procedure + Laterality'",
+      type: 'group',
+      item: [
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+              valueCodeableConcept: {
+                coding: [
+                  {
+                    system: 'http://hl7.org/fhir/questionnaire-item-control',
+                    code: 'autocomplete'
+                  }
+                ]
+              }
+            }
+          ],
+          linkId: 'medical-history-condition',
+          text: 'Medical History Condition',
+          type: 'open-choice',
+          answerValueSet: '#MedicalHistory'
+        },
+        {
+          extension: [
+            {
+              url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+              valueCodeableConcept: {
+                coding: [
+                  {
+                    system: 'http://hl7.org/fhir/questionnaire-item-control',
+                    code: 'autocomplete'
+                  }
+                ]
+              }
+            }
+          ],
+          linkId: 'medical-history-condition',
+          text: 'Medical History Condition',
+          type: 'open-choice',
+          answerValueSet: '#MedicalHistory'
+        }
+      ]
+    }
+  ]
+};