@aehrc/smart-forms-renderer 0.35.4 → 0.35.6

package/lib/utils/fhirpathAsyncUtils/outcome-utils.js.map

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package/lib/utils/fhirpathAsyncUtils/test-questionnaire.d.ts

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+export {};

package/lib/utils/fhirpathAsyncUtils/test-questionnaire.js

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+const testQuestionnaire = {
+    resourceType: 'Questionnaire',
+    id: 'CalculatedExpressionCvdRiskCalculatorPrepop',
+    meta: {
+        versionId: '1',
+        lastUpdated: '2024-06-11T10:15:22.026+00:00',
+        source: '#CwlqsoGwV8CY9l7l'
+    },
+    extension: [
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'Condition',
+                language: 'application/x-fhir-query',
+                expression: 'Condition?patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsTobaccoSmokingStatus',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=72166-2&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsBodyHeight',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=8302-2&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsBodyWeight',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=29463-7&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsHeadCircumference',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=9843-4&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsWaistCircumference',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=8280-0&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsBloodPressure',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=85354-9&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsHeartRate',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=8867-4&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsTotalCholesterol',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=14647-2&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/StructureDefinition/variable',
+            valueExpression: {
+                name: 'ObsHDLCholesterol',
+                language: 'application/x-fhir-query',
+                expression: 'Observation?code=14646-4&_count=1&_sort=-date&patient={{%patient.id}}'
+            }
+        },
+        {
+            url: 'http://hl7.org/fhir/uv/sdc/StructureDefinition/sdc-questionnaire-launchContext',
+            extension: [
+                {
+                    url: 'name',
+                    valueCoding: {
+                        system: 'http://hl7.org/fhir/uv/sdc/CodeSystem/launchContext',
+                        code: 'patient'
+                    }
+                },
+                {
+                    url: 'type',
+                    valueCode: 'Patient'
+                },
+                {
+                    url: 'description',
+                    valueString: 'The patient that is to be used to pre-populate the form'
+                }
+            ]
+        }
+    ],
+    contained: [
+        {
+            resourceType: 'ValueSet',
+            id: 'MedicalHistory',
+            url: 'https://smartforms.csiro.au/ig/ValueSet/MedicalHistory',
+            name: 'MedicalHistory',
+            title: 'Medical History',
+            status: 'draft',
+            experimental: false,
+            description: 'The Medical History value set includes values that may be used to represent medical history, operations and hospital admissions.',
+            compose: {
+                include: [
+                    {
+                        system: 'http://snomed.info/sct',
+                        filter: [
+                            {
+                                property: 'constraint',
+                                op: '=',
+                                value: '^32570581000036105|Problem/Diagnosis reference set| OR ^32570141000036105|Procedure foundation reference set|'
+                            }
+                        ]
+                    }
+                ]
+            }
+        }
+    ],
+    url: 'https://smartforms.csiro.au/docs/sdc/population/calculated-expression-2',
+    version: '0.1.0',
+    name: 'CalculatedExpressionCvdRiskCalculatorPrepop',
+    title: 'Calculated Expression CVD Risk Calculator - Pre-population',
+    status: 'draft',
+    date: '2024-05-01',
+    publisher: 'AEHRC CSIRO',
+    item: [
+        {
+            extension: [
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'female',
+                        language: 'text/fhirpath',
+                        expression: "iif(item.where(linkId='gender').answer.value.code='female', 1, 0)"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'age',
+                        language: 'text/fhirpath',
+                        expression: "item.where(linkId='patient-age').answer.value"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cvdAge',
+                        language: 'text/fhirpath',
+                        expression: 'iif(%age > 74, 74, iif(%age < 35, 35, %age))'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'systolicBP',
+                        language: 'text/fhirpath',
+                        expression: "item.where(linkId='systolic-blood-pressure').answer.value"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'smoker',
+                        language: 'text/fhirpath',
+                        expression: "iif(item.where(linkId='smoking-status').answer.value.code='77176002', 1, 0)"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'totalCh',
+                        language: 'text/fhirpath',
+                        expression: "item.where(linkId='total-cholesterol').answer.value"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'hdl',
+                        language: 'text/fhirpath',
+                        expression: "item.where(linkId='hdl-cholesterol').answer.value"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'diabetes',
+                        language: 'text/fhirpath',
+                        expression: "iif(item.where(linkId='has-diabetes').answer.value = true,1,0)"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'ecgLvh',
+                        language: 'text/fhirpath',
+                        expression: "iif(item.where(linkId='ecg-lvh').answer.value = true,1,0)"
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cBase',
+                        language: 'text/fhirpath',
+                        expression: '18.8144'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cFemale',
+                        language: 'text/fhirpath',
+                        expression: '%female * -1.2146'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cAge',
+                        language: 'text/fhirpath',
+                        expression: '%cvdAge.ln() * -1.8443'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cAgeFemale',
+                        language: 'text/fhirpath',
+                        expression: '%female * %cvdAge.ln() * 0.3668'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cSBP',
+                        language: 'text/fhirpath',
+                        expression: '%systolicBP.ln() * -1.4032'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cSmoker',
+                        language: 'text/fhirpath',
+                        expression: '%smoker * -0.3899'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cTcHdl',
+                        language: 'text/fhirpath',
+                        expression: '(%totalCh / %hdl).ln() * -0.539'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cDiabetes',
+                        language: 'text/fhirpath',
+                        expression: '%diabetes * -0.3036'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cDiabetesFemale',
+                        language: 'text/fhirpath',
+                        expression: '%female * %diabetes * -0.1697'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cEcgLvh',
+                        language: 'text/fhirpath',
+                        expression: '%ecgLvh * -0.3362'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'sumOfCoeffs',
+                        language: 'text/fhirpath',
+                        expression: '%cBase + %cFemale + %cAge + %cAgeFemale + %cSBP + %cSmoker + %cTcHdl + %cDiabetes + %cDiabetesFemale + %cEcgLvh'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cvdScale',
+                        language: 'text/fhirpath',
+                        expression: '(0.6536 + (%sumOfCoeffs * -0.2402)).exp()'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cvdU',
+                        language: 'text/fhirpath',
+                        expression: '(5.ln()-%sumOfCoeffs)/%cvdScale'
+                    }
+                },
+                {
+                    url: 'http://hl7.org/fhir/StructureDefinition/variable',
+                    valueExpression: {
+                        name: 'cvdScore',
+                        language: 'text/fhirpath',
+                        expression: '(1 - (%cvdU.exp()*-1).exp()) * 100'
+                    }
+                }
+            ],
+            linkId: 'scenario-2',
+            text: "Request for X-Ray Right Foot as 'Procedure + Laterality'",
+            type: 'group',
+            item: [
+                {
+                    extension: [
+                        {
+                            url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+                            valueCodeableConcept: {
+                                coding: [
+                                    {
+                                        system: 'http://hl7.org/fhir/questionnaire-item-control',
+                                        code: 'autocomplete'
+                                    }
+                                ]
+                            }
+                        }
+                    ],
+                    linkId: 'medical-history-condition',
+                    text: 'Medical History Condition',
+                    type: 'open-choice',
+                    answerValueSet: '#MedicalHistory'
+                },
+                {
+                    extension: [
+                        {
+                            url: 'http://hl7.org/fhir/StructureDefinition/questionnaire-itemControl',
+                            valueCodeableConcept: {
+                                coding: [
+                                    {
+                                        system: 'http://hl7.org/fhir/questionnaire-item-control',
+                                        code: 'autocomplete'
+                                    }
+                                ]
+                            }
+                        }
+                    ],
+                    linkId: 'medical-history-condition',
+                    text: 'Medical History Condition',
+                    type: 'open-choice',
+                    answerValueSet: '#MedicalHistory'
+                }
+            ]
+        }
+    ]
+};
+export {};
+//# sourceMappingURL=test-questionnaire.js.map

package/lib/utils/fhirpathAsyncUtils/test-questionnaire.js.map

@@ -0,0 +1 @@
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package/lib/utils/questionnaireStoreUtils/addDisplayToCodings.d.ts

@@ -1,6 +1,7 @@
-import type { Coding } from 'fhir/r4';
+import type { Coding, QuestionnaireItemAnswerOption } from 'fhir/r4';
 import type { CodeSystemLookupPromise } from '../../interfaces/lookup.interface';
 export declare function addDisplayToProcessedCodings(processedCodings: Record<string, Coding[]>, terminologyServerUrl: string): Promise<Record<string, Coding[]>>;
+export declare function addDisplayToAnswerOptions(answerOptions: Record<string, QuestionnaireItemAnswerOption[]>, terminologyServerUrl: string): Promise<Record<string, QuestionnaireItemAnswerOption[]>>;
 export declare function addDisplayToCodingArray(codings: Coding[], terminologyServerUrl: string): Promise<Coding[]>;
 export declare function getCodeSystemLookupPromise(query: string, terminologyServerUrl: string): Promise<any>;
 export declare function resolveLookupPromises(codeSystemLookupPromises: Record<string, CodeSystemLookupPromise>): Promise<Record<string, CodeSystemLookupPromise>>;

package/lib/utils/questionnaireStoreUtils/addDisplayToCodings.js

@@ -57,6 +57,41 @@ export function addDisplayToProcessedCodings(processedCodings, terminologyServer
         return processedCodings;
     });
 }
+// Use this for a Record<linkId, answerOption[]>
+export function addDisplayToAnswerOptions(answerOptions, terminologyServerUrl) {
+    var _a;
+    return __awaiter(this, void 0, void 0, function* () {
+        // Store code system lookup promises for codings without displays
+        const codeSystemLookupPromises = {};
+        for (const key in answerOptions) {
+            const options = answerOptions[key];
+            for (const option of options) {
+                if (option.valueCoding && !option.valueCoding.display) {
+                    const query = `system=${option.valueCoding.system}&code=${option.valueCoding.code}`;
+                    codeSystemLookupPromises[query] = {
+                        promise: getCodeSystemLookupPromise(query, terminologyServerUrl),
+                        oldCoding: option.valueCoding
+                    };
+                }
+            }
+        }
+        // Resolves lookup promises in one go and assign newCodings to processedCodings
+        const resolvedCodeSystemLookupPromises = yield resolveLookupPromises(codeSystemLookupPromises);
+        for (const key in answerOptions) {
+            const options = answerOptions[key];
+            for (const option of options) {
+                if (option.valueCoding) {
+                    const lookUpKey = `system=${option.valueCoding.system}&code=${option.valueCoding.code}`;
+                    const resolvedLookup = resolvedCodeSystemLookupPromises[lookUpKey];
+                    if ((_a = resolvedLookup === null || resolvedLookup === void 0 ? void 0 : resolvedLookup.newCoding) === null || _a === void 0 ? void 0 : _a.display) {
+                        option.valueCoding.display = resolvedLookup.newCoding.display;
+                    }
+                }
+            }
+        }
+        return answerOptions;
+    });
+}
 // Use this for an array of codings
 export function addDisplayToCodingArray(codings, terminologyServerUrl) {
     var _a;

package/lib/utils/questionnaireStoreUtils/addDisplayToCodings.js.map

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package/lib/utils/questionnaireStoreUtils/createQuestionaireModel.js

@@ -31,7 +31,7 @@ import { extractOtherExtensions } from './extractOtherExtensions';
 import { resolveValueSets } from './resolveValueSets';
 import { addAdditionalVariables } from './addAdditionalVariables';
 import { getLinkIdTypeTuples } from '../qItem';
-import { addDisplayToProcessedCodings } from './addDisplayToCodings';
+import { addDisplayToAnswerOptions, addDisplayToProcessedCodings } from './addDisplayToCodings';
 export function createQuestionnaireModel(questionnaire, additionalVariables, terminologyServerUrl) {
     return __awaiter(this, void 0, void 0, function* () {
         if (!questionnaire.item) {
@@ -47,7 +47,7 @@ export function createQuestionnaireModel(questionnaire, additionalVariables, ter
         let processedValueSetCodings = extractContainedValueSetsResult.processedValueSetCodings;
         const processedValueSetUrls = extractContainedValueSetsResult.processedValueSetUrls;
         const extractOtherExtensionsResult = extractOtherExtensions(questionnaire, variables, valueSetPromises, terminologyServerUrl);
-        const { enableWhenItems, enableWhenExpressions, calculatedExpressions, answerExpressions } = extractOtherExtensionsResult;
+        const { enableWhenItems, enableWhenExpressions, calculatedExpressions, answerExpressions, answerOptions } = extractOtherExtensionsResult;
         variables = extractOtherExtensionsResult.variables;
         valueSetPromises = extractOtherExtensionsResult.valueSetPromises;
         const resolveValueSetsResult = yield resolveValueSets(variables, valueSetPromises, processedValueSetCodings, terminologyServerUrl);
@@ -55,6 +55,8 @@ export function createQuestionnaireModel(questionnaire, additionalVariables, ter
         processedValueSetCodings = resolveValueSetsResult.processedValueSetCodings;
         // In processedCodings, add display values to codings lacking them
         processedValueSetCodings = yield addDisplayToProcessedCodings(processedValueSetCodings, terminologyServerUrl);
+        // In answerOptions, add display values to codings lacking them
+        const completeAnswerOptions = yield addDisplayToAnswerOptions(answerOptions, terminologyServerUrl);
         return {
             itemTypes,
             tabs,
@@ -64,6 +66,7 @@ export function createQuestionnaireModel(questionnaire, additionalVariables, ter
             enableWhenExpressions,
             calculatedExpressions,
             answerExpressions,
+            answerOptions: completeAnswerOptions,
             processedValueSetCodings,
             processedValueSetUrls,
             fhirPathContext: {}
@@ -79,6 +82,7 @@ function createEmptyModel() {
         calculatedExpressions: {},
         enableWhenExpressions: { singleExpressions: {}, repeatExpressions: {} },
         answerExpressions: {},
+        answerOptions: {},
         enableWhenItems: { singleItems: {}, repeatItems: {} },
         processedValueSetCodings: {},
         processedValueSetUrls: {},

package/lib/utils/questionnaireStoreUtils/createQuestionaireModel.js.map

@@ -1 +1 @@
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package/lib/utils/questionnaireStoreUtils/extractOtherExtensions.d.ts

@@ -1,4 +1,4 @@
-import type { Questionnaire, QuestionnaireItem, QuestionnaireItemEnableWhen } from 'fhir/r4';
+import type { Questionnaire, QuestionnaireItem, QuestionnaireItemAnswerOption, QuestionnaireItemEnableWhen } from 'fhir/r4';
 import type { CalculatedExpression } from '../../interfaces/calculatedExpression.interface';
 import type { EnableWhenExpressions, EnableWhenItems, EnableWhenRepeatItemProperties, EnableWhenSingleItemProperties } from '../../interfaces/enableWhen.interface';
 import type { AnswerExpression } from '../../interfaces/answerExpression.interface';
@@ -11,6 +11,7 @@ interface ReturnParamsRecursive {
     calculatedExpressions: Record<string, CalculatedExpression[]>;
     answerExpressions: Record<string, AnswerExpression>;
     valueSetPromises: Record<string, ValueSetPromise>;
+    answerOptions: Record<string, QuestionnaireItemAnswerOption[]>;
 }
 export declare function extractOtherExtensions(questionnaire: Questionnaire, variables: Variables, valueSetPromises: Record<string, ValueSetPromise>, terminologyServerUrl: string): ReturnParamsRecursive;
 /**

package/lib/utils/questionnaireStoreUtils/extractOtherExtensions.js

@@ -30,6 +30,7 @@ export function extractOtherExtensions(questionnaire, variables, valueSetPromise
     };
     const calculatedExpressions = {};
     const answerExpressions = {};
+    const answerOptions = {};
     if (!questionnaire.item || questionnaire.item.length === 0) {
         return {
             variables: variables,
@@ -40,6 +41,7 @@ export function extractOtherExtensions(questionnaire, variables, valueSetPromise
             },
             calculatedExpressions: {},
             answerExpressions: {},
+            answerOptions: {},
             valueSetPromises: valueSetPromises
         };
     }
@@ -53,6 +55,7 @@ export function extractOtherExtensions(questionnaire, variables, valueSetPromise
             enableWhenExpressions,
             calculatedExpressions,
             answerExpressions,
+            answerOptions,
             valueSetPromises,
             defaultTerminologyServerUrl: terminologyServerUrl,
             parentRepeatGroupLinkId: isRepeatGroup ? topLevelItem.linkId : undefined
@@ -64,12 +67,13 @@ export function extractOtherExtensions(questionnaire, variables, valueSetPromise
         enableWhenExpressions,
         calculatedExpressions,
         answerExpressions,
+        answerOptions,
         valueSetPromises
     };
 }
 function extractExtensionsFromItemRecursive(params) {
-    var _a;
-    const { questionnaire, item, variables, enableWhenItems, enableWhenExpressions, calculatedExpressions, answerExpressions, valueSetPromises, defaultTerminologyServerUrl, parentRepeatGroupLinkId } = params;
+    var _a, _b;
+    const { questionnaire, item, variables, enableWhenItems, enableWhenExpressions, calculatedExpressions, answerExpressions, answerOptions, valueSetPromises, defaultTerminologyServerUrl, parentRepeatGroupLinkId } = params;
     const items = item.item;
     const isRepeatGroup = !!item.repeats && item.type === 'group';
     if (items && items.length > 0) {
@@ -115,10 +119,15 @@ function extractExtensionsFromItemRecursive(params) {
             expression: `${answerExpression.expression}`
         };
     }
+    // Get answerOptions
+    const options = (_a = item.answerOption) !== null && _a !== void 0 ? _a : null;
+    if (options) {
+        answerOptions[item.linkId] = options;
+    }
     const valueSetUrl = item.answerValueSet;
     if (valueSetUrl) {
         if (!valueSetPromises[valueSetUrl] && !valueSetUrl.startsWith('#')) {
-            const terminologyServerUrl = (_a = getTerminologyServerUrl(item)) !== null && _a !== void 0 ? _a : defaultTerminologyServerUrl;
+            const terminologyServerUrl = (_b = getTerminologyServerUrl(item)) !== null && _b !== void 0 ? _b : defaultTerminologyServerUrl;
             valueSetPromises[valueSetUrl] = {
                 promise: getValueSetPromise(valueSetUrl, terminologyServerUrl)
             };
@@ -140,6 +149,7 @@ function extractExtensionsFromItemRecursive(params) {
         enableWhenExpressions,
         calculatedExpressions,
         answerExpressions,
+        answerOptions,
         valueSetPromises
     };
 }

package/lib/utils/questionnaireStoreUtils/extractOtherExtensions.js.map

@@ -1 +1 @@
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