@adaptivemcp/memory 0.2.5 → 0.4.0

package/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 Kemal Elmizan
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/dist/index.d.ts

@@ -1,2 +1,3 @@
 export * from "./store.js";
+export * from "./migrations.js";
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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package/dist/index.js

@@ -1,2 +1,3 @@
 export * from "./store.js";
+export * from "./migrations.js";
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,cAAc,YAAY,CAAC;AAC3B,cAAc,iBAAiB,CAAC"}

package/dist/migrations.d.ts

@@ -0,0 +1,16 @@
+import type { DatabaseSync } from "node:sqlite";
+export interface Migration {
+    version: number;
+    name: string;
+    up: (db: DatabaseSync) => void;
+}
+/**
+ * Ordered, idempotent schema history. Each migration's `up` must be safe to
+ * run against a fresh `:memory:` database (migration 1 recreates the whole
+ * schema `IF NOT EXISTS`) as well as against a pre-existing file database
+ * that already has these objects from before this framework existed.
+ */
+export declare const MIGRATIONS: Migration[];
+/** Applies every migration in `migrations` that hasn't already been recorded, in version order. */
+export declare function runMigrations(db: DatabaseSync, migrations?: Migration[]): void;
+//# sourceMappingURL=migrations.d.ts.map

package/dist/migrations.d.ts.map

@@ -0,0 +1 @@
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package/dist/migrations.js

@@ -0,0 +1,104 @@
+const INIT_SCHEMA = `
+CREATE TABLE IF NOT EXISTS tools (
+  tool_name TEXT NOT NULL,
+  server_name TEXT NOT NULL DEFAULT '',
+  annotation TEXT NOT NULL,
+  insights TEXT NOT NULL DEFAULT '[]',
+  recommendations TEXT NOT NULL DEFAULT '[]',
+  stats TEXT NOT NULL DEFAULT '{}',
+  updated_at TEXT NOT NULL,
+  PRIMARY KEY (tool_name, server_name)
+);
+
+CREATE TABLE IF NOT EXISTS execution_nodes (
+  id TEXT PRIMARY KEY,
+  tool_name TEXT NOT NULL,
+  server_name TEXT,
+  session_id TEXT NOT NULL,
+  workflow_id TEXT,
+  parent_id TEXT,
+  children_ids TEXT NOT NULL DEFAULT '[]',
+  timestamp TEXT NOT NULL,
+  duration_ms INTEGER,
+  status TEXT NOT NULL,
+  input TEXT,
+  output TEXT,
+  error TEXT,
+  model TEXT,
+  cost TEXT,
+  metadata TEXT,
+  FOREIGN KEY (parent_id) REFERENCES execution_nodes(id)
+);
+
+CREATE INDEX IF NOT EXISTS idx_nodes_session ON execution_nodes(session_id);
+CREATE INDEX IF NOT EXISTS idx_nodes_workflow ON execution_nodes(workflow_id);
+CREATE INDEX IF NOT EXISTS idx_nodes_tool ON execution_nodes(tool_name);
+CREATE INDEX IF NOT EXISTS idx_nodes_parent ON execution_nodes(parent_id);
+`;
+/**
+ * Ordered, idempotent schema history. Each migration's `up` must be safe to
+ * run against a fresh `:memory:` database (migration 1 recreates the whole
+ * schema `IF NOT EXISTS`) as well as against a pre-existing file database
+ * that already has these objects from before this framework existed.
+ */
+export const MIGRATIONS = [
+    { version: 1, name: "init_schema", up: (db) => db.exec(INIT_SCHEMA) },
+    {
+        version: 2,
+        name: "add_nodes_timestamp_index",
+        up: (db) => db.exec(`CREATE INDEX IF NOT EXISTS idx_nodes_timestamp ON execution_nodes(timestamp)`),
+    },
+    {
+        version: 3,
+        name: "add_metric_cells",
+        up: (db) => db.exec(`
+CREATE TABLE IF NOT EXISTS metric_cells (
+  tool_name TEXT NOT NULL,
+  server_name TEXT NOT NULL DEFAULT '',
+  window TEXT NOT NULL DEFAULT 'all',
+  dims_key TEXT NOT NULL,
+  dims TEXT NOT NULL,
+  invocations INTEGER NOT NULL DEFAULT 0,
+  failures INTEGER NOT NULL DEFAULT 0,
+  error_codes TEXT NOT NULL DEFAULT '{}',
+  duration_sum REAL NOT NULL DEFAULT 0,
+  duration_count INTEGER NOT NULL DEFAULT 0,
+  duration_hist TEXT NOT NULL DEFAULT '[]',
+  token_in_sum REAL NOT NULL DEFAULT 0,
+  token_out_sum REAL NOT NULL DEFAULT 0,
+  token_count INTEGER NOT NULL DEFAULT 0,
+  cost_sum REAL NOT NULL DEFAULT 0,
+  ewma_failure_rate REAL,
+  ewma_duration_ms REAL,
+  first_seen TEXT,
+  last_seen TEXT,
+  exemplars TEXT NOT NULL DEFAULT '[]',
+  PRIMARY KEY (tool_name, server_name, window, dims_key)
+);
+CREATE INDEX IF NOT EXISTS idx_metric_cells_tool ON metric_cells(tool_name, server_name);
+`),
+    },
+    {
+        version: 4,
+        name: "add_metric_cells_attempts",
+        up: (db) => db.exec(`ALTER TABLE metric_cells ADD COLUMN attempts INTEGER NOT NULL DEFAULT 0`),
+    },
+];
+/** Applies every migration in `migrations` that hasn't already been recorded, in version order. */
+export function runMigrations(db, migrations = MIGRATIONS) {
+    db.exec(`CREATE TABLE IF NOT EXISTS schema_migrations (
+      version INTEGER PRIMARY KEY,
+      name TEXT NOT NULL,
+      applied_at TEXT NOT NULL
+    )`);
+    const applied = new Set(db.prepare(`SELECT version FROM schema_migrations`).all().map((r) => r.version));
+    const ordered = [...migrations].sort((a, b) => a.version - b.version);
+    const insert = db.prepare(`INSERT INTO schema_migrations (version, name, applied_at) VALUES (?, ?, ?)`);
+    for (const migration of ordered) {
+        if (applied.has(migration.version))
+            continue;
+        migration.up(db);
+        insert.run(migration.version, migration.name, new Date().toISOString());
+    }
+}
+//# sourceMappingURL=migrations.js.map

package/dist/migrations.js.map

@@ -0,0 +1 @@
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package/dist/store.d.ts

@@ -1,9 +1,32 @@
-import { type DatabaseSyncOptions } from "node:sqlite";
-import type { Annotation, Insight, Recommendation, RecommendationType, Store, ToolExecutionEvent, ToolRecord } from "@adaptivemcp/spec";
+import type { DatabaseSyncOptions } from "node:sqlite";
+import type { Annotation, Insight, MetricCell, Recommendation, RecommendationType, Store, ToolExecutionEvent, ToolRecord, ExecutionNode } from "@adaptivemcp/spec";
+export interface MemoryStorePragmaOptions {
+    journalMode?: string;
+    synchronous?: string;
+    busyTimeoutMs?: number;
+}
 export interface MemoryStoreOptions {
     /** Path to the SQLite database file. Use ":memory:" for an in-memory store. */
     path?: string;
     dbOptions?: DatabaseSyncOptions;
+    /**
+     * PRAGMA overrides. `journalMode` is ignored for `:memory:` stores, since
+     * WAL requires a file on disk. Defaults: journalMode "WAL", synchronous
+     * "NORMAL", busyTimeoutMs 5000. `foreign_keys` is always enabled.
+     */
+    pragmas?: MemoryStorePragmaOptions;
+    /** When set, `recordExecutionNode` opportunistically prunes nodes older than `maxAgeMs`. */
+    retention?: {
+        maxAgeMs: number;
+    };
+    /**
+     * Cardinality guardrail for metric cells: cap the number of distinct `model`
+     * dimensions per tool; new models past the cap fold into a single `other`
+     * bucket. Defaults to 8.
+     */
+    metricCardinality?: {
+        maxModelsPerTool?: number;
+    };
 }
 /**
  * SQLite-backed store for Adaptive MCP.
@@ -14,11 +37,36 @@ export interface MemoryStoreOptions {
  */
 export declare class MemoryStore implements Store {
     private db;
+    private readonly isMemory;
+    private readonly retention?;
+    private readonly maxModelsPerTool;
+    private lastPrunedAt;
     constructor(options?: MemoryStoreOptions);
     close(): void;
-    /** Ensure a tool record exists, seeding it with an empty annotation. */
+    /**
+     * Ensure a tool record exists, seeding it with an empty annotation.
+     *
+     * - When `serverName` is omitted, reuses whatever record already exists for
+     *   that `toolName` (any server) rather than creating a second,
+     *   disconnected row — callers that don't know the server shouldn't
+     *   fragment a tool they've already ensured elsewhere with a known server.
+     * - When `serverName` is given but no exact match exists, "claims" an
+     *   unclaimed record (one created by a serverName-less caller, e.g. a human
+     *   annotation set before any execution was observed) instead of
+     *   fragmenting it into a second row — the first time a server becomes
+     *   known for a tool, its prior annotation/insights/recommendations carry
+     *   forward onto that server's row.
+     */
     ensureTool(toolName: string, serverName?: string): ToolRecord;
-    getTool(toolName: string): ToolRecord | undefined;
+    /** Reassign an unclaimed row's `server_name` in place once it's learned. */
+    private claimServer;
+    /**
+     * Read a single tool record. When `serverName` is given, looks up the exact
+     * `(toolName, serverName)` row. Otherwise falls back to the most recently
+     * updated row with that `toolName` — correct as long as the name isn't
+     * shared across servers, ambiguous (but non-crashing) if it is.
+     */
+    getTool(toolName: string, serverName?: string): ToolRecord | undefined;
     allTools(): ToolRecord[];
     /** Persist a human-written annotation (the static metadata layer). */
     setAnnotation(annotation: Annotation): ToolRecord;
@@ -31,9 +79,63 @@ export declare class MemoryStore implements Store {
      * orchestration, and approval packages so each adaptation pass recomputes its
      * own recommendations instead of appending duplicates on every observation.
      */
-    clearRecommendations(toolName: string, type: RecommendationType): ToolRecord;
+    clearRecommendations(toolName: string, type: RecommendationType, serverName?: string): ToolRecord;
     /** Fold a tool execution event into the persisted stats. */
     recordExecution(event: ToolExecutionEvent): ToolRecord;
+    /**
+     * Read pre-aggregated metric cells (bounded dimensional rollups). This is the
+     * durable, queryable metadata layer that replaces a raw events table.
+     */
+    metricCells(options?: {
+        toolName?: string;
+        serverName?: string;
+    }): MetricCell[];
+    /** Pre-aggregate an event into the bounded set of metric cells it belongs to. */
+    private foldMetricCells;
+    /**
+     * Cardinality guardrail: fold new models past the per-tool cap into a single
+     * `other` bucket. Existing models and the bucket itself always pass through.
+     */
+    private capModel;
+    private readMetricCell;
+    private writeMetricCell;
+    /** `server_name` is part of the primary key, so it's matched in WHERE, not reassigned in SET. */
     private write;
+    /** Record an execution node in the graph. */
+    recordExecutionNode(node: ExecutionNode): ExecutionNode;
+    /**
+     * Delete execution nodes older than `olderThanMs`. Does not cascade-clean
+     * dangling `parent_id`/`children_ids` references left on surviving rows —
+     * acceptable for a best-effort retention pass; callers relying on strict
+     * graph integrity should prune with generous windows.
+     */
+    pruneExecutionNodes(olderThanMs: number, now?: number): {
+        deleted: number;
+    };
+    private maybeOpportunisticPrune;
+    /** Delete hourly (non-`all`) metric cells older than `olderThanMs`; `all` is kept. */
+    pruneMetricCells(olderThanMs: number, now?: number): {
+        deleted: number;
+    };
+    /** Get an execution node by ID. */
+    getExecutionNode(id: string): ExecutionNode | undefined;
+    /** Get all nodes for a session. */
+    getNodesBySession(sessionId: string): ExecutionNode[];
+    /** Get all nodes for a workflow (across sessions). */
+    getNodesByWorkflow(workflowId: string): ExecutionNode[];
+    /** Get every distinct workflow ID that has at least one recorded execution node. */
+    getWorkflowIds(): string[];
+    /** Get every distinct session ID that has at least one recorded execution node. */
+    getSessionIds(): string[];
+    /** Get children of a node. */
+    getChildren(parentId: string): ExecutionNode[];
+    /** Get parent of a node. */
+    getParent(childId: string): ExecutionNode | undefined;
+    /** Get root nodes (no parent) for a session. */
+    getRootNodes(sessionId: string): ExecutionNode[];
+    /** Get leaf nodes (no children) for a session. */
+    getLeafNodes(sessionId: string): ExecutionNode[];
+    /** Update children IDs of a parent node. */
+    updateChildrenIds(parentId: string, childrenIds: string[]): void;
 }
 //# sourceMappingURL=store.d.ts.map

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package/dist/store.js

@@ -1,15 +1,22 @@
-import { DatabaseSync } from "node:sqlite";
-const SCHEMA = `
-CREATE TABLE IF NOT EXISTS tools (
-  tool_name TEXT PRIMARY KEY,
-  server_name TEXT,
-  annotation TEXT NOT NULL,
-  insights TEXT NOT NULL DEFAULT '[]',
-  recommendations TEXT NOT NULL DEFAULT '[]',
-  stats TEXT NOT NULL DEFAULT '{}',
-  updated_at TEXT NOT NULL
-);
-`;
+import { createRequire } from "node:module";
+import { runMigrations } from "./migrations.js";
+const { DatabaseSync: DatabaseSyncCtor } = createRequire(import.meta.url)("node:sqlite");
+const DEFAULT_PRAGMAS = {
+    journalMode: "WAL",
+    synchronous: "NORMAL",
+    busyTimeoutMs: 5000,
+};
+/** Opportunistic pruning is throttled to at most once per this interval, to avoid a DELETE scan on every write. */
+const RETENTION_CHECK_INTERVAL_MS = 60 * 60 * 1000;
+/**
+ * `server_name` is part of the primary key, not just a stored column: two
+ * different MCP servers may expose a tool with the same name, and keying on
+ * `tool_name` alone would let one server's record silently overwrite the
+ * other's. It defaults to `''` (rather than being nullable) because SQLite
+ * treats every NULL as distinct in a UNIQUE/PRIMARY KEY index, which would
+ * defeat the composite key for the common case where the server is unknown.
+ */
+const UNKNOWN_SERVER = "";
 /**
  * SQLite-backed store for Adaptive MCP.
  *
@@ -19,23 +26,56 @@ CREATE TABLE IF NOT EXISTS tools (
  */
 export class MemoryStore {
     db;
+    isMemory;
+    retention;
+    maxModelsPerTool;
+    lastPrunedAt = 0;
     constructor(options = {}) {
-        this.db = new DatabaseSync(options.path ?? ":memory:", options.dbOptions ?? {});
-        this.db.exec(SCHEMA);
+        const path = options.path ?? ":memory:";
+        this.isMemory = path === ":memory:";
+        this.retention = options.retention;
+        this.maxModelsPerTool = options.metricCardinality?.maxModelsPerTool ?? 8;
+        this.db = new DatabaseSyncCtor(path, options.dbOptions ?? {});
+        const pragmas = { ...DEFAULT_PRAGMAS, ...options.pragmas };
+        if (!this.isMemory) {
+            this.db.exec(`PRAGMA journal_mode = ${pragmas.journalMode}`);
+        }
+        this.db.exec(`PRAGMA synchronous = ${pragmas.synchronous}`);
+        this.db.exec(`PRAGMA foreign_keys = ON`);
+        this.db.exec(`PRAGMA busy_timeout = ${pragmas.busyTimeoutMs}`);
+        runMigrations(this.db);
     }
     close() {
         this.db.close();
     }
-    /** Ensure a tool record exists, seeding it with an empty annotation. */
+    /**
+     * Ensure a tool record exists, seeding it with an empty annotation.
+     *
+     * - When `serverName` is omitted, reuses whatever record already exists for
+     *   that `toolName` (any server) rather than creating a second,
+     *   disconnected row — callers that don't know the server shouldn't
+     *   fragment a tool they've already ensured elsewhere with a known server.
+     * - When `serverName` is given but no exact match exists, "claims" an
+     *   unclaimed record (one created by a serverName-less caller, e.g. a human
+     *   annotation set before any execution was observed) instead of
+     *   fragmenting it into a second row — the first time a server becomes
+     *   known for a tool, its prior annotation/insights/recommendations carry
+     *   forward onto that server's row.
+     */
     ensureTool(toolName, serverName) {
-        const existing = this.getTool(toolName);
+        const existing = this.getTool(toolName, serverName);
         if (existing)
             return existing;
+        if (serverName !== undefined) {
+            const unclaimed = this.getTool(toolName, UNKNOWN_SERVER);
+            if (unclaimed)
+                return this.claimServer(unclaimed, serverName);
+        }
         const now = new Date().toISOString();
         const record = {
             toolName,
             serverName,
-            annotation: { toolName },
+            annotation: { toolName, serverName },
             insights: [],
             recommendations: [],
             stats: emptyStats(),
@@ -44,24 +84,47 @@ export class MemoryStore {
         this.db
             .prepare(`INSERT INTO tools (tool_name, server_name, annotation, insights, recommendations, stats, updated_at)
          VALUES (?, ?, ?, ?, ?, ?, ?)`)
-            .run(toolName, serverName ?? null, JSON.stringify(record.annotation), JSON.stringify(record.insights), JSON.stringify(record.recommendations), JSON.stringify(record.stats), now);
+            .run(toolName, serverName ?? UNKNOWN_SERVER, JSON.stringify(record.annotation), JSON.stringify(record.insights), JSON.stringify(record.recommendations), JSON.stringify(record.stats), now);
         return record;
     }
-    getTool(toolName) {
-        const row = this.db
-            .prepare(`SELECT * FROM tools WHERE tool_name = ?`)
-            .get(toolName);
+    /** Reassign an unclaimed row's `server_name` in place once it's learned. */
+    claimServer(record, serverName) {
+        const updated = {
+            ...record,
+            serverName,
+            annotation: { ...record.annotation, serverName },
+            updatedAt: new Date().toISOString(),
+        };
+        this.db
+            .prepare(`UPDATE tools SET server_name = ?, annotation = ?, updated_at = ? WHERE tool_name = ? AND server_name = ?`)
+            .run(serverName, JSON.stringify(updated.annotation), updated.updatedAt, record.toolName, UNKNOWN_SERVER);
+        return updated;
+    }
+    /**
+     * Read a single tool record. When `serverName` is given, looks up the exact
+     * `(toolName, serverName)` row. Otherwise falls back to the most recently
+     * updated row with that `toolName` — correct as long as the name isn't
+     * shared across servers, ambiguous (but non-crashing) if it is.
+     */
+    getTool(toolName, serverName) {
+        const row = serverName !== undefined
+            ? this.db
+                .prepare(`SELECT * FROM tools WHERE tool_name = ? AND server_name = ?`)
+                .get(toolName, serverName)
+            : this.db
+                .prepare(`SELECT * FROM tools WHERE tool_name = ? ORDER BY updated_at DESC LIMIT 1`)
+                .get(toolName);
         return row ? deserialize(row) : undefined;
     }
     allTools() {
         const rows = this.db
-            .prepare(`SELECT * FROM tools ORDER BY tool_name`)
+            .prepare(`SELECT * FROM tools ORDER BY tool_name, server_name`)
             .all();
         return rows.map(deserialize);
     }
     /** Persist a human-written annotation (the static metadata layer). */
     setAnnotation(annotation) {
-        const record = this.ensureTool(annotation.toolName);
+        const record = this.ensureTool(annotation.toolName, annotation.serverName);
         const updated = {
             ...record,
             annotation: { ...record.annotation, ...annotation },
@@ -72,7 +135,7 @@ export class MemoryStore {
     }
     /** Record a learned insight derived from observed behavior. */
     addInsight(insight) {
-        const record = this.ensureTool(insight.toolName);
+        const record = this.ensureTool(insight.toolName, insight.serverName);
         const insights = [...record.insights.filter((i) => i.key !== insight.key), insight];
         const updated = {
             ...record,
@@ -84,7 +147,7 @@ export class MemoryStore {
     }
     /** Store a suggested adaptation. */
     addRecommendation(rec) {
-        const record = this.ensureTool(rec.toolName);
+        const record = this.ensureTool(rec.toolName, rec.serverName);
         const updated = {
             ...record,
             recommendations: [...record.recommendations, rec],
@@ -98,8 +161,8 @@ export class MemoryStore {
      * orchestration, and approval packages so each adaptation pass recomputes its
      * own recommendations instead of appending duplicates on every observation.
      */
-    clearRecommendations(toolName, type) {
-        const record = this.ensureTool(toolName);
+    clearRecommendations(toolName, type, serverName) {
+        const record = this.ensureTool(toolName, serverName);
         const updated = {
             ...record,
             recommendations: record.recommendations.filter((r) => r.type !== type),
@@ -119,15 +182,226 @@ export class MemoryStore {
             updatedAt: new Date().toISOString(),
         };
         this.write(updated);
+        this.foldMetricCells(event);
         return updated;
     }
+    /**
+     * Read pre-aggregated metric cells (bounded dimensional rollups). This is the
+     * durable, queryable metadata layer that replaces a raw events table.
+     */
+    metricCells(options = {}) {
+        const clauses = [];
+        const params = [];
+        if (options.toolName !== undefined) {
+            clauses.push("tool_name = ?");
+            params.push(options.toolName);
+        }
+        if (options.serverName !== undefined) {
+            clauses.push("server_name = ?");
+            params.push(options.serverName);
+        }
+        const where = clauses.length > 0 ? ` WHERE ${clauses.join(" AND ")}` : "";
+        const rows = this.db
+            .prepare(`SELECT * FROM metric_cells${where} ORDER BY tool_name, server_name, dims_key`)
+            .all(...params);
+        return rows.map(deserializeMetricCell);
+    }
+    /** Pre-aggregate an event into the bounded set of metric cells it belongs to. */
+    foldMetricCells(event) {
+        const now = event.timestamp ?? new Date().toISOString();
+        const model = event.model !== undefined
+            ? this.capModel(event.toolName, event.serverName ?? UNKNOWN_SERVER, event.model)
+            : undefined;
+        for (const dimensions of cellDimensionsFor(event, model)) {
+            const key = dimsKey(dimensions);
+            // The overall `{}` cell also gets an hourly window (for drift); dimensioned
+            // cells keep only the lifetime aggregate to bound write amplification.
+            const windows = Object.keys(dimensions).length === 0 ? ["all", windowKey(now)] : ["all"];
+            for (const window of windows) {
+                const existing = this.readMetricCell(event.toolName, event.serverName ?? UNKNOWN_SERVER, window, key);
+                this.writeMetricCell(foldMetricCell(existing, event, dimensions, window, now), key);
+            }
+        }
+    }
+    /**
+     * Cardinality guardrail: fold new models past the per-tool cap into a single
+     * `other` bucket. Existing models and the bucket itself always pass through.
+     */
+    capModel(toolName, serverName, model) {
+        if (model === "other")
+            return model;
+        const rows = this.db
+            .prepare(`SELECT dims FROM metric_cells WHERE tool_name = ? AND server_name = ? AND window = 'all'`)
+            .all(toolName, serverName);
+        const models = new Set();
+        for (const row of rows) {
+            const dims = JSON.parse(row.dims);
+            if (dims.model)
+                models.add(dims.model);
+        }
+        if (models.has(model) || models.size < this.maxModelsPerTool)
+            return model;
+        return "other";
+    }
+    readMetricCell(toolName, serverName, window, dimsKeyValue) {
+        const row = this.db
+            .prepare(`SELECT * FROM metric_cells WHERE tool_name = ? AND server_name = ? AND window = ? AND dims_key = ?`)
+            .get(toolName, serverName, window, dimsKeyValue);
+        return row ? deserializeMetricCell(row) : undefined;
+    }
+    writeMetricCell(cell, dimsKeyValue) {
+        this.db
+            .prepare(`INSERT OR REPLACE INTO metric_cells (
+           tool_name, server_name, window, dims_key, dims,
+           invocations, failures, attempts, error_codes,
+           duration_sum, duration_count, duration_hist,
+           token_in_sum, token_out_sum, token_count, cost_sum,
+           ewma_failure_rate, ewma_duration_ms, first_seen, last_seen, exemplars
+         ) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+            .run(cell.toolName, cell.serverName ?? UNKNOWN_SERVER, cell.window, dimsKeyValue, JSON.stringify(cell.dimensions), cell.invocations, cell.failures, cell.attempts, JSON.stringify(cell.errorCodes), cell.durationSum, cell.durationCount, JSON.stringify(cell.durationHistogram), cell.tokenInSum, cell.tokenOutSum, cell.tokenCount, cell.costSum, cell.ewmaFailureRate ?? null, cell.ewmaDurationMs ?? null, cell.firstSeen, cell.lastSeen, JSON.stringify(cell.exemplars));
+    }
+    /** `server_name` is part of the primary key, so it's matched in WHERE, not reassigned in SET. */
     write(record) {
         this.db
             .prepare(`UPDATE tools
-         SET server_name = ?, annotation = ?, insights = ?, recommendations = ?, stats = ?, updated_at = ?
-         WHERE tool_name = ?`)
-            .run(record.serverName ?? null, JSON.stringify(record.annotation), JSON.stringify(record.insights), JSON.stringify(record.recommendations), JSON.stringify(record.stats), record.updatedAt, record.toolName);
+         SET annotation = ?, insights = ?, recommendations = ?, stats = ?, updated_at = ?
+         WHERE tool_name = ? AND server_name = ?`)
+            .run(JSON.stringify(record.annotation), JSON.stringify(record.insights), JSON.stringify(record.recommendations), JSON.stringify(record.stats), record.updatedAt, record.toolName, record.serverName ?? UNKNOWN_SERVER);
+    }
+    /** Record an execution node in the graph. */
+    recordExecutionNode(node) {
+        this.db
+            .prepare(`INSERT OR REPLACE INTO execution_nodes (id, tool_name, server_name, session_id, workflow_id, parent_id, children_ids, timestamp, duration_ms, status, input, output, error, model, cost, metadata)
+         VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)`)
+            .run(node.id, node.toolName, node.serverName ?? null, node.sessionId, node.workflowId ?? null, node.parentId ?? null, JSON.stringify(node.childrenIds ?? []), node.timestamp, node.durationMs ?? null, node.status, node.input ? JSON.stringify(node.input) : null, node.output ? JSON.stringify(node.output) : null, node.error ? JSON.stringify(node.error) : null, node.model ?? null, node.cost ? JSON.stringify(node.cost) : null, node.metadata ? JSON.stringify(node.metadata) : null);
+        this.maybeOpportunisticPrune();
+        return node;
+    }
+    /**
+     * Delete execution nodes older than `olderThanMs`. Does not cascade-clean
+     * dangling `parent_id`/`children_ids` references left on surviving rows —
+     * acceptable for a best-effort retention pass; callers relying on strict
+     * graph integrity should prune with generous windows.
+     */
+    pruneExecutionNodes(olderThanMs, now = Date.now()) {
+        const cutoff = new Date(now - olderThanMs).toISOString();
+        const result = this.db.prepare(`DELETE FROM execution_nodes WHERE timestamp < ?`).run(cutoff);
+        this.lastPrunedAt = now;
+        return { deleted: Number(result.changes) };
+    }
+    maybeOpportunisticPrune() {
+        if (!this.retention)
+            return;
+        const now = Date.now();
+        if (now - this.lastPrunedAt < RETENTION_CHECK_INTERVAL_MS)
+            return;
+        this.pruneExecutionNodes(this.retention.maxAgeMs, now);
+        this.pruneMetricCells(this.retention.maxAgeMs, now);
+    }
+    /** Delete hourly (non-`all`) metric cells older than `olderThanMs`; `all` is kept. */
+    pruneMetricCells(olderThanMs, now = Date.now()) {
+        const cutoff = new Date(now - olderThanMs).toISOString();
+        const result = this.db
+            .prepare(`DELETE FROM metric_cells WHERE window != 'all' AND last_seen < ?`)
+            .run(cutoff);
+        return { deleted: Number(result.changes) };
+    }
+    /** Get an execution node by ID. */
+    getExecutionNode(id) {
+        const row = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE id = ?`)
+            .get(id);
+        return row ? deserializeExecutionNode(row) : undefined;
+    }
+    /** Get all nodes for a session. */
+    getNodesBySession(sessionId) {
+        const rows = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE session_id = ? ORDER BY timestamp`)
+            .all(sessionId);
+        return rows.map(deserializeExecutionNode);
+    }
+    /** Get all nodes for a workflow (across sessions). */
+    getNodesByWorkflow(workflowId) {
+        const rows = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE workflow_id = ? ORDER BY timestamp`)
+            .all(workflowId);
+        return rows.map(deserializeExecutionNode);
     }
+    /** Get every distinct workflow ID that has at least one recorded execution node. */
+    getWorkflowIds() {
+        const rows = this.db
+            .prepare(`SELECT DISTINCT workflow_id FROM execution_nodes WHERE workflow_id IS NOT NULL`)
+            .all();
+        return rows.map((r) => r.workflow_id);
+    }
+    /** Get every distinct session ID that has at least one recorded execution node. */
+    getSessionIds() {
+        const rows = this.db
+            .prepare(`SELECT DISTINCT session_id FROM execution_nodes`)
+            .all();
+        return rows.map((r) => r.session_id);
+    }
+    /** Get children of a node. */
+    getChildren(parentId) {
+        const parent = this.getExecutionNode(parentId);
+        if (!parent)
+            return [];
+        const childIds = parent.childrenIds;
+        if (childIds.length === 0)
+            return [];
+        const placeholders = childIds.map(() => "?").join(",");
+        const rows = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE id IN (${placeholders})`)
+            .all(...childIds);
+        return rows.map(deserializeExecutionNode);
+    }
+    /** Get parent of a node. */
+    getParent(childId) {
+        const child = this.getExecutionNode(childId);
+        if (!child || !child.parentId)
+            return undefined;
+        return this.getExecutionNode(child.parentId);
+    }
+    /** Get root nodes (no parent) for a session. */
+    getRootNodes(sessionId) {
+        const rows = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE session_id = ? AND parent_id IS NULL ORDER BY timestamp`)
+            .all(sessionId);
+        return rows.map(deserializeExecutionNode);
+    }
+    /** Get leaf nodes (no children) for a session. */
+    getLeafNodes(sessionId) {
+        const rows = this.db
+            .prepare(`SELECT * FROM execution_nodes WHERE session_id = ? AND children_ids = '[]' ORDER BY timestamp`)
+            .all(sessionId);
+        return rows.map(deserializeExecutionNode);
+    }
+    /** Update children IDs of a parent node. */
+    updateChildrenIds(parentId, childrenIds) {
+        this.db
+            .prepare(`UPDATE execution_nodes SET children_ids = ? WHERE id = ?`)
+            .run(JSON.stringify(childrenIds), parentId);
+    }
+}
+function deserializeExecutionNode(row) {
+    return {
+        id: row.id,
+        toolName: row.tool_name,
+        serverName: row.server_name ?? undefined,
+        sessionId: row.session_id,
+        workflowId: row.workflow_id ?? undefined,
+        parentId: row.parent_id ?? undefined,
+        childrenIds: JSON.parse(row.children_ids),
+        timestamp: row.timestamp,
+        durationMs: row.duration_ms ?? undefined,
+        status: row.status,
+        input: row.input ? JSON.parse(row.input) : undefined,
+        output: row.output ? JSON.parse(row.output) : undefined,
+        error: row.error ? JSON.parse(row.error) : undefined,
+        model: row.model ?? undefined,
+        cost: row.cost ? JSON.parse(row.cost) : undefined,
+        metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
+    };
 }
 function emptyStats() {
     return {
@@ -137,6 +411,7 @@ function emptyStats() {
         avgDurationMs: null,
         totalCost: 0,
         lastObservedAt: null,
+        avgOutputTokens: undefined,
     };
 }
 function foldEvent(stats, event) {
@@ -148,6 +423,10 @@ function foldEvent(stats, event) {
         ? (prevAvg * (invocations - 1) + durations[0]) / invocations
         : stats.avgDurationMs;
     const totalCost = stats.totalCost + (event.cost?.amount ?? 0);
+    // Track average output tokens for context cost
+    const outputTokens = eventTokens(event).outputTokens ?? 0;
+    const prevAvgTokens = stats.avgOutputTokens ?? 0;
+    const avgOutputTokens = (prevAvgTokens * (invocations - 1) + outputTokens) / invocations;
     return {
         invocations,
         failures,
@@ -155,12 +434,13 @@ function foldEvent(stats, event) {
         avgDurationMs,
         totalCost,
         lastObservedAt: event.timestamp,
+        avgOutputTokens,
     };
 }
 function deserialize(row) {
     return {
         toolName: row.tool_name,
-        serverName: row.server_name ?? undefined,
+        serverName: row.server_name === UNKNOWN_SERVER ? undefined : row.server_name,
         annotation: JSON.parse(row.annotation),
         insights: JSON.parse(row.insights),
         recommendations: JSON.parse(row.recommendations),
@@ -168,4 +448,137 @@ function deserialize(row) {
         updatedAt: row.updated_at,
     };
 }
+function deserializeMetricCell(row) {
+    return {
+        toolName: row.tool_name,
+        serverName: row.server_name === UNKNOWN_SERVER ? undefined : row.server_name,
+        window: row.window,
+        dimensions: JSON.parse(row.dims),
+        invocations: row.invocations,
+        failures: row.failures,
+        attempts: row.attempts,
+        errorCodes: JSON.parse(row.error_codes),
+        durationSum: row.duration_sum,
+        durationCount: row.duration_count,
+        durationHistogram: JSON.parse(row.duration_hist),
+        tokenInSum: row.token_in_sum,
+        tokenOutSum: row.token_out_sum,
+        tokenCount: row.token_count,
+        costSum: row.cost_sum,
+        ewmaFailureRate: row.ewma_failure_rate ?? undefined,
+        ewmaDurationMs: row.ewma_duration_ms ?? undefined,
+        firstSeen: row.first_seen ?? "",
+        lastSeen: row.last_seen ?? "",
+        exemplars: JSON.parse(row.exemplars),
+    };
+}
+/** Fixed duration histogram buckets (upper bound in ms); the last bucket is overflow. */
+const DURATION_BUCKETS_MS = [50, 100, 250, 500, 1000, 2500, 5000, 10000];
+const DURATION_BUCKET_COUNT = DURATION_BUCKETS_MS.length + 1;
+/** EWMA smoothing factor for recency-weighted failure rate / duration. */
+const EWMA_ALPHA = 0.2;
+/** How many recent event ids a cell keeps for drill-down. */
+const EXEMPLAR_LIMIT = 5;
+/** Token usage, preferring the explicit `usage` field and falling back to `cost`. */
+function eventTokens(event) {
+    if (event.usage && (event.usage.inputTokens !== undefined || event.usage.outputTokens !== undefined)) {
+        return event.usage;
+    }
+    return { inputTokens: event.cost?.inputTokens, outputTokens: event.cost?.outputTokens };
+}
+/** The bounded set of dimension tuples an event contributes to. */
+function cellDimensionsFor(event, model = event.model) {
+    const dims = [{}];
+    if (model)
+        dims.push({ model });
+    if (event.decoding) {
+        dims.push({
+            ...(model ? { model } : {}),
+            decodingProfile: event.decoding.profile,
+            resolverVersion: event.decoding.resolverVersion,
+        });
+    }
+    return dims;
+}
+/** Stable key for a dimension tuple (sorted keys). */
+function dimsKey(dims) {
+    return JSON.stringify(Object.keys(dims)
+        .sort()
+        .map((key) => [key, dims[key]]));
+}
+/** Hourly retention-window key for an ISO timestamp (UTC). */
+function windowKey(iso) {
+    return `hour:${iso.slice(0, 13)}`;
+}
+function durationBucketIndex(ms) {
+    for (let i = 0; i < DURATION_BUCKETS_MS.length; i += 1) {
+        if (ms <= DURATION_BUCKETS_MS[i])
+            return i;
+    }
+    return DURATION_BUCKETS_MS.length;
+}
+/** Fold one event into a metric cell (creating it when absent). */
+function foldMetricCell(existing, event, dimensions, window, now) {
+    const failed = event.status === "failed";
+    const failure = failed ? 1 : 0;
+    const duration = typeof event.durationMs === "number" ? event.durationMs : undefined;
+    const tokens = eventTokens(event);
+    const hasTokens = tokens.inputTokens !== undefined || tokens.outputTokens !== undefined;
+    const cost = event.cost?.amount;
+    const base = existing ?? {
+        toolName: event.toolName,
+        serverName: event.serverName,
+        window,
+        dimensions,
+        invocations: 0,
+        failures: 0,
+        attempts: 0,
+        errorCodes: {},
+        durationSum: 0,
+        durationCount: 0,
+        durationHistogram: new Array(DURATION_BUCKET_COUNT).fill(0),
+        tokenInSum: 0,
+        tokenOutSum: 0,
+        tokenCount: 0,
+        costSum: 0,
+        firstSeen: now,
+        lastSeen: now,
+        exemplars: [],
+    };
+    const errorCodes = { ...base.errorCodes };
+    if (failed) {
+        const code = event.error?.code ?? "unknown";
+        errorCodes[code] = (errorCodes[code] ?? 0) + 1;
+    }
+    const histogram = [...base.durationHistogram];
+    while (histogram.length < DURATION_BUCKET_COUNT)
+        histogram.push(0);
+    if (duration !== undefined)
+        histogram[durationBucketIndex(duration)] = (histogram[durationBucketIndex(duration)] ?? 0) + 1;
+    return {
+        ...base,
+        dimensions,
+        invocations: base.invocations + 1,
+        failures: base.failures + failure,
+        attempts: base.attempts + (event.attempts ?? 1),
+        errorCodes,
+        durationSum: base.durationSum + (duration ?? 0),
+        durationCount: base.durationCount + (duration !== undefined ? 1 : 0),
+        durationHistogram: histogram,
+        tokenInSum: base.tokenInSum + (tokens.inputTokens ?? 0),
+        tokenOutSum: base.tokenOutSum + (tokens.outputTokens ?? 0),
+        tokenCount: base.tokenCount + (hasTokens ? 1 : 0),
+        costSum: base.costSum + (cost !== undefined && Number.isFinite(cost) ? cost : 0),
+        ewmaFailureRate: base.ewmaFailureRate === undefined
+            ? failure
+            : base.ewmaFailureRate + EWMA_ALPHA * (failure - base.ewmaFailureRate),
+        ewmaDurationMs: duration === undefined
+            ? base.ewmaDurationMs
+            : base.ewmaDurationMs === undefined
+                ? duration
+                : base.ewmaDurationMs + EWMA_ALPHA * (duration - base.ewmaDurationMs),
+        lastSeen: now,
+        exemplars: [...base.exemplars, event.id].slice(-EXEMPLAR_LIMIT),
+    };
+}
 //# sourceMappingURL=store.js.map

package/dist/store.js.map

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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@adaptivemcp/memory",
-  "version": "0.2.5",
+  "version": "0.4.0",
   "description": "Persistent operational knowledge for Adaptive MCP, backed by SQLite (node:sqlite).",
   "license": "MIT",
   "type": "module",
@@ -17,16 +17,16 @@
     "dist",
     "README.md"
   ],
-  "scripts": {
-    "build": "tsc -p tsconfig.json",
-    "test": "vitest run --config ../../vitest.config.ts"
-  },
   "dependencies": {
-    "@adaptivemcp/spec": "workspace:*"
+    "@adaptivemcp/spec": "0.4.0"
   },
   "devDependencies": {
     "@types/node": "^22.0.0",
     "typescript": "^5.6.0",
     "vitest": "^2.1.0"
+  },
+  "scripts": {
+    "build": "tsc -p tsconfig.json",
+    "test": "vitest run --config ../../vitest.config.ts"
   }
-}
+}