@abi-software/scaffoldvuer 1.16.0-beta.1 → 1.16.0

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@abi-software/scaffoldvuer",
-  "version": "1.16.0-beta.1",
+  "version": "1.16.0",
   "license": "Apache-2.0",
   "repository": {
     "type": "git",
@@ -41,7 +41,7 @@
     "*.js"
   ],
   "dependencies": {
-    "@abi-software/map-utilities": "1.8.2",
+    "@abi-software/map-utilities": "1.8.3",
     "@abi-software/sparc-annotation": "^0.3.2",
     "@abi-software/svg-sprite": "1.0.3",
     "@element-plus/icons-vue": "^2.3.1",
@@ -53,7 +53,7 @@
     "unplugin-vue-components": "^0.26.0",
     "vue": "^3.4.21",
     "vue-router": "^4.2.5",
-    "zincjs": "^1.19.3"
+    "zincjs": "1.20.0"
   },
   "devDependencies": {
     "@babel/eslint-parser": "^7.28.0",

package/src/App.vue

@@ -605,12 +605,51 @@ export default {
       testSlides(this.$refs.scaffold, texture_prefix);
     },
     multipleNifti: async function () {
+      const v1 = {
+        "id": "mesh-location-orientation",
+        "locations": [
+          {
+            "identifier": 1,
+            "label": "original",
+            "orientation": [1.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 1.0],
+            "position": [-283, -363, 1090],
+            "scale": [540, 540, 276],
+            "flipY": false,
+            "flipZ": true,
+            "reference_point": "corner"
+          }
+        ],
+        "settings": {
+          "slides": [
+            {
+              "direction": "x",
+              "value": 0.5
+            },
+            {
+              "direction": "y",
+              "value": 0.5
+            },
+            {
+              "direction": "z",
+              "value": 0.45
+            }
+          ]
+        },
+        "type": "slides"
+      }
+      const options = {
+        hideWhitePixel: false,
+        hideBlackPixel: false,
+        keepScalePosition: true,
+        filterByValue: true,
+        timeEnabled: true,
+      }
       const urls = [
         "https://mapcore-bucket1.s3.us-west-2.amazonaws.com/digital_twins/080626-demo/downsample_phase_1.nii.gz",
         "https://mapcore-bucket1.s3.us-west-2.amazonaws.com/digital_twins/080626-demo/downsample_phase_3.nii.gz",
         "https://mapcore-bucket1.s3.us-west-2.amazonaws.com/digital_twins/080626-demo/downsample_phase_5.nii.gz"
       ]
-      const newTexture = await this.$refs.scaffold.readNIFTIFromSource(urls, true, this.maskUrl);
+      const newTexture = await this.$refs.scaffold.readNIFTIFromSource(urls, true, this.maskUrl, v1, options, true);
       newTexture.timeEnabled = true;
       newTexture.setIsPickable(false);
       const scene = this.$refs.scaffold.$module.scene;

package/src/components/ScaffoldVuer.vue

@@ -3132,8 +3132,8 @@ export default {
         this.setMarkerModeForObjectsWithName(key, value, "on");
       }
     },
-    readNIFTIFromSource: async function(urls, useHeaderInfo, maskURL) {
-      const newTexture = await readNIFTIFromSource(urls, useHeaderInfo, maskURL);
+    readNIFTIFromSource: async function(urls, useHeaderInfo, maskURL, settings, options) {
+      const newTexture = await readNIFTIFromSource(urls, useHeaderInfo, maskURL, settings, options);
       return newTexture;
     },
   },

package/src/scripts/niftiHelper.js

@@ -1,81 +1,8 @@
 //import * as nifti from 'nifti-reader-js';
 import { createPrimitivesFromNIFTI } from "zincjs/src/loaders/niftiReader.js";
 
-const options = {
-  hideWhitePixel: false,
-  hideBlackPixel: false,
-  keepScalePosition: true,
-  filterByValue: true,
-  timeEnabled: true,
-}
-
-const textureSettings = {
-  v1: {
-    "id": "mesh-location-orientation",
-    "locations": [
-      {
-        "identifier": 1,
-        "label": "original",
-        "orientation": [1.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 1.0],
-        "position": [-283, -363, 1090],
-        "scale": [540, 540, 276],
-        "flipY": false,
-        "reference_point": "corner"
-      }
-    ],
-    "settings": {
-      "slides": [
-        {
-          "direction": "x",
-          "value": 0.5
-        },
-        {
-          "direction": "y",
-          "value": 0.5
-        },
-        {
-          "direction": "z",
-          "value": 0.45
-        }
-      ]
-    },
-    "type": "slides"
-  },
-  v2: {
-    "id": "mesh-location-orientation",
-    "locations": [
-      {
-        "identifier": 1,
-        "label": "original",
-        "orientation": [1.0, 0.0, 0.0, 0.0, 1.0, 0.0, 0.0, 0.0, 1.0],
-        "position": [-183, -343, 1034],
-        "scale": [520, 520, 235],
-        "flipY": false,
-        "reference_point": "corner"
-      }
-    ],
-    "settings": {
-      "slides": [
-        {
-          "direction": "x",
-          "value": 0.5
-        },
-        {
-          "direction": "y",
-          "value": 0.5
-        },
-        {
-          "direction": "z",
-          "value": 0.45
-        }
-      ]
-    },
-    "type": "slides"
-  }
-}
-
-const readNIFTIFromSource = async (url, useHeaderInfo, maskURL) => {
-  const images = await createPrimitivesFromNIFTI(url, useHeaderInfo, maskURL, textureSettings['v1'], options);
+const readNIFTIFromSource = async (url, useHeaderInfo, maskURL, settings, options) => {
+  const images = await createPrimitivesFromNIFTI(url, useHeaderInfo, maskURL, settings, options);
   return images;
 }