@abi-software/mapintegratedvuer 1.9.1 → 1.9.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
@@ -1,17 +1,17 @@
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- import { markRaw as w } from "vue";
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- import { u as b, p as C, q as I, E as h, T as M, r as S, s as F, v as A, x as $ } from "./index-qckfB1dl.js";
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- import { mapStores as H } from "pinia";
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+ import { markRaw as v } from "vue";
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+ import { u as b, p as M, q as A, E as f, T as C, r as S, s as F, v as $, x as H } from "./index-BcpVBq1h.js";
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+ import { mapStores as I } from "pinia";
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  const d = function(e) {
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  return e ? [...new Set(e.map((t) => JSON.stringify(t)))].map(
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  (t) => JSON.parse(t)
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  ) : [];
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- }, g = [], v = async function(e, t) {
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- const i = t.filter(
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+ }, g = [], w = async function(e, t) {
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+ const n = t.filter(
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  (s) => g.some((a) => a.taxon === s)
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- ), n = g.filter(
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- (s) => i.includes(s.taxon)
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+ ), i = g.filter(
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+ (s) => n.includes(s.taxon)
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  ), o = t.filter(
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- (s) => !i.includes(s)
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+ (s) => !n.includes(s)
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  );
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  if (o.length) {
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  const s = await e.queryLabels(o);
@@ -20,32 +20,32 @@ const d = function(e) {
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  let { entity: r, label: l } = a;
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  l === "Mammalia" && (l = "Mammalia not otherwise specified");
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  const c = { taxon: r, label: l };
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- n.push(c), g.push(c);
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- }), n;
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+ i.push(c), g.push(c);
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+ }), i;
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  } else
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- return n;
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+ return i;
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  }, y = function(e, t) {
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  if (!e || !t) return !1;
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- let i = JSON.stringify(e), n = JSON.stringify(t);
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- return i.indexOf(n) !== -1;
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+ let n = JSON.stringify(e), i = JSON.stringify(t);
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+ return n.indexOf(i) !== -1;
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  }, p = (e, t) => {
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- const i = e.name ?? e, n = t.name ?? t, o = i.toUpperCase(), s = n.toUpperCase();
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+ const n = e.name ?? e, i = t.name ?? t, o = n.toUpperCase(), s = i.toUpperCase();
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  return o < s ? -1 : o > s ? 1 : 0;
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  };
35
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  let N = function() {
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  this.initialise = function(e) {
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  this.flatmapAPI = e, this.destinations = [], this.origins = [], this.components = [], this.rawURLs = [], this.controller = void 0, this.uberons = [], this.lookUp = [], this.connectivitySource = "sckan";
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  }, this.createTooltipData = async function(e, t) {
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- let i = [];
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- t.feature.hyperlinks && t.feature.hyperlinks.length > 0 ? i = t.feature.hyperlinks : i = this.rawURLs;
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- let n;
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+ let n = [];
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+ t.feature.hyperlinks && t.feature.hyperlinks.length > 0 ? n = t.feature.hyperlinks : n = this.rawURLs;
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+ let i;
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  if (t.provenanceTaxonomy) {
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- n = [];
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+ i = [];
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  try {
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- const s = await v(e, t.provenanceTaxonomy);
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+ const s = await w(e, t.provenanceTaxonomy);
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  s.length && s.forEach((a) => {
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  const { label: r } = a;
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- n.push(r);
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+ i.push(r);
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  });
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  } catch (s) {
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  console.log(s);
@@ -60,9 +60,9 @@ let N = function() {
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  componentsWithDatasets: this.componentsWithDatasets,
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  title: t.label,
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  featureId: t.resource,
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- hyperlinks: i,
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+ hyperlinks: n,
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  provenanceTaxonomy: t.provenanceTaxonomy,
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- provenanceTaxonomyLabel: n,
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+ provenanceTaxonomyLabel: i,
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  connectivitySource: this.connectivitySource
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  };
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  }, this.updateTooltipData = function(e) {
@@ -77,66 +77,66 @@ let N = function() {
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  connectivitySource: this.connectivitySource
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  };
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  }, this.createComponentsLabelList = function(e, t) {
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- let i = [];
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- return e.forEach((n) => {
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- i.push(this.createLabelFromNeuralNode(n[0]), t), n.length === 2 && i.push(this.createLabelFromNeuralNode(n[1]), t);
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- }), i;
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+ let n = [];
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+ return e.forEach((i) => {
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+ n.push(this.createLabelFromNeuralNode(i[0]), t), i.length === 2 && n.push(this.createLabelFromNeuralNode(i[1]), t);
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+ }), n;
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  }, this.createLabelLookup = function(e, t) {
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- return new Promise(async (i) => {
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- let n = {};
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+ return new Promise(async (n) => {
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+ let i = {};
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  this.uberons = [];
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- const o = await v(e, t);
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+ const o = await w(e, t);
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  o.length && (o.forEach((s) => {
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  const { taxon: a, label: r } = s;
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- n[a] = r, this.uberons.push({
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+ i[a] = r, this.uberons.push({
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  id: a,
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  name: r
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  });
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- }), i(n));
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+ }), n(i));
96
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  });
97
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  }, this.buildConnectivitySqlStatement = function(e) {
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  let t = "select knowledge from knowledge where entity in (";
99
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  if (e.length === 1)
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  t += `'${e[0]}')`;
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  else if (e.length > 1)
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- for (let i in e)
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- t += `'${e[i]}'${i >= e.length - 1 ? ")" : ","} `;
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+ for (let n in e)
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+ t += `'${e[n]}'${n >= e.length - 1 ? ")" : ","} `;
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  return t;
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  }, this.buildLabelSqlStatement = function(e) {
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  let t = "select entity, label from labels where entity in (";
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  if (e.length === 1)
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  t += `'${e[0]}')`;
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  else if (e.length > 1)
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- for (let i in e)
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- t += `'${e[i]}'${i >= e.length - 1 ? ")" : ","} `;
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+ for (let n in e)
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+ t += `'${e[n]}'${n >= e.length - 1 ? ")" : ","} `;
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  return t;
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  }, this.findAllIdsFromConnectivity = function(e) {
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- let t = e.connectivity.flat(), i = [...new Set(t)], n = [];
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- return i.forEach((o) => {
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- Array.isArray(o) ? n.push(o.flat()) : n.push(o);
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- }), [...new Set(n.flat())];
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+ let t = e.connectivity.flat(), n = [...new Set(t)], i = [];
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+ return n.forEach((o) => {
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+ Array.isArray(o) ? i.push(o.flat()) : i.push(o);
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+ }), [...new Set(i.flat())];
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  }, this.flattenConnectivity = function(e) {
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- let t = e.flat(), i = [...new Set(t)], n = [];
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- return i.forEach((o) => {
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- Array.isArray(o) ? n.push(o.flat()) : n.push(o);
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- }), n.flat();
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- }, this.findComponents = function(e, t, i, n) {
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+ let t = e.flat(), n = [...new Set(t)], i = [];
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+ return n.forEach((o) => {
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+ Array.isArray(o) ? i.push(o.flat()) : i.push(o);
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+ }), i.flat();
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+ }, this.findComponents = function(e, t, n, i) {
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  let o = e.connectivity.flat(), s = d(o), a = [], r = !1;
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  return s.forEach((l) => {
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- r = !1, y(t, l) && (r = !0), n && y(n, l) && (r = !0), y(i, l) && (r = !0), r || a.push(l);
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+ r = !1, y(t, l) && (r = !0), i && y(i, l) && (r = !0), y(n, l) && (r = !0), r || a.push(l);
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  }), a;
128
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  }, this.retrieveFlatmapKnowledgeForEvent = async function(e, t) {
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  this.controller && this.controller.abort(), this.controller = new AbortController(), this.controller.signal;
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- const i = t.resource;
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- if (this.destinations = [], this.origins = [], this.components = [], this.rawURLs = [], !i || i.length === 0 || !i[0]) return;
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- let n = this.queryForConnectivityNew(e, i[0]);
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- return await Promise.all([n]);
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- }, this.queryForConnectivityNew = function(e, t, i = "sckan", n = !0) {
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- return this.connectivitySource = i, new Promise((o) => {
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- (i === "map" ? this.queryMapConnectivity(e.provenance.uuid, t) : e.queryKnowledge(t)).then((a) => {
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+ const n = t.resource;
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+ if (this.destinations = [], this.origins = [], this.components = [], this.rawURLs = [], !n || n.length === 0 || !n[0]) return;
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+ let i = this.queryForConnectivityNew(e, n[0]);
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+ return await Promise.all([i]);
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+ }, this.queryForConnectivityNew = function(e, t, n = "sckan", i = !0) {
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+ return this.connectivitySource = n, new Promise((o) => {
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+ (n === "map" ? this.queryMapConnectivity(e.provenance.uuid, t) : e.queryKnowledge(t)).then((a) => {
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  if (this.checkConnectivityExists(a)) {
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  let r = a;
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- n ? this.processConnectivity(e, r).then((l) => {
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+ i ? this.processConnectivity(e, r).then((l) => {
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  a.references && (this.rawURLs = [...a.references]), o(l);
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  }) : o(r);
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  } else
@@ -146,40 +146,40 @@ let N = function() {
146
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  });
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  });
148
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  }, this.queryMapConnectivity = async function(e, t) {
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- const i = this.flatmapAPI + `flatmap/${e}/connectivity/${t}`;
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- try {
151
- const n = await fetch(i);
152
- if (!n.ok)
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- throw new Error(`Response status: ${n.status}`);
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- return await n.json();
155
- } catch (n) {
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- throw new Error(n);
157
- }
158
- }, this.queryMapPaths = async function(e) {
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- const t = this.flatmapAPI + `flatmap/${e}/pathways`;
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+ const n = this.flatmapAPI + `flatmap/${e}/connectivity/${t}`;
160
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  try {
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- const i = await fetch(t);
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+ const i = await fetch(n);
162
152
  if (!i.ok)
163
153
  throw new Error(`Response status: ${i.status}`);
164
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  return await i.json();
165
155
  } catch (i) {
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  throw new Error(i);
167
157
  }
168
- }, this.queryForConnectivity = function(e, t, i, n = !0) {
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+ }, this.queryMapPaths = async function(e) {
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+ const t = this.flatmapAPI + `flatmap/${e}/pathways`;
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+ try {
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+ const n = await fetch(t);
162
+ if (!n.ok)
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+ throw new Error(`Response status: ${n.status}`);
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+ return await n.json();
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+ } catch (n) {
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+ throw new Error(n);
167
+ }
168
+ }, this.queryForConnectivity = function(e, t, n, i = !0) {
169
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  const o = { sql: this.buildConnectivitySqlStatement(t) }, s = {
170
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  method: "POST",
171
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  headers: {
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  "Content-Type": "application/json"
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  },
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  body: JSON.stringify(o),
175
- ...i ? { signal: i } : {}
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+ ...n ? { signal: n } : {}
176
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  // add signal to header if it exists
177
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  };
178
178
  return new Promise((a) => {
179
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  fetch(`${this.flatmapAPI}knowledge/query/`, s).then((r) => r.json()).then((r) => {
180
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  if (this.connectivityExists(r)) {
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  let l = JSON.parse(r.values[0][0]);
182
- n ? this.processConnectivity(e, l).then((c) => {
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+ i ? this.processConnectivity(e, l).then((c) => {
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  a(c);
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  }) : a(l);
185
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  } else
@@ -196,45 +196,45 @@ let N = function() {
196
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  }, this.findIfNodeIsSingle = function(e) {
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  return e.length === 1 ? (console.error("Server returns a single node", e), e[0]) : e.length === 2 && e[1].length === 0 ? e[0] : !1;
198
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  }, this.createLabelFromNeuralNode = function(e, t) {
199
- let i = this.findIfNodeIsSingle(e);
200
- if (i)
201
- return t[i];
202
- let n = t[e[0]];
199
+ let n = this.findIfNodeIsSingle(e);
200
+ if (n)
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+ return t[n];
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+ let i = t[e[0]];
203
203
  return e.length === 2 && e[1].length > 0 && e[1].forEach((o) => {
204
- t[o] == null ? n += `, ${o}` : n += `, ${t[o]}`;
205
- }), n;
206
- }, this.flattenAndFindDatasets = function(e, t, i) {
207
- let n = this.flattenConnectivity(e), o = this.flattenConnectivity(t), s = this.flattenConnectivity(i);
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+ t[o] == null ? i += `, ${o}` : i += `, ${t[o]}`;
205
+ }), i;
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+ }, this.flattenAndFindDatasets = function(e, t, n) {
207
+ let i = this.flattenConnectivity(e), o = this.flattenConnectivity(t), s = this.flattenConnectivity(n);
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208
  this.originsWithDatasets = this.uberons.filter(
209
- (a) => n.indexOf(a.id) !== -1
209
+ (a) => i.indexOf(a.id) !== -1
210
210
  ).sort(p), this.componentsWithDatasets = this.uberons.filter(
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  (a) => o.indexOf(a.id) !== -1
212
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  ).sort(p), this.destinationsWithDatasets = this.uberons.filter(
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  (a) => s.indexOf(a.id) !== -1
214
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  ).sort(p);
215
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  }, this.processConnectivity = function(e, t) {
216
- return new Promise((i) => {
217
- let n = [], o = [], s;
216
+ return new Promise((n) => {
217
+ let i = [], o = [], s;
218
218
  if (t && t["node-phenotypes"]) {
219
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  const l = ["ilxtr:hasSomaLocatedIn"], c = ["ilxtr:hasAxonPresynapticElementIn", "ilxtr:hasAxonSensorySubcellularElementIn"];
220
- l.forEach((u) => {
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- n.push(...t["node-phenotypes"][u]);
222
- }), n = d(n), c.forEach((u) => {
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- o.push(...t["node-phenotypes"][u]);
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+ l.forEach((h) => {
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+ i.push(...t["node-phenotypes"][h]);
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+ }), i = d(i), c.forEach((h) => {
223
+ o.push(...t["node-phenotypes"][h]);
224
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  }), o = d(o);
225
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  } else
226
- o = d(t.axons), t.somas && t.somas.length > 0 && n.push(...t.somas), t.dendrites && t.dendrites.length > 0 && n.push(...t.dendrites), n = d(n), s = t.somas;
227
- const a = this.findComponents(t, o, n, s), r = this.findAllIdsFromConnectivity(t);
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+ o = d(t.axons), t.somas && t.somas.length > 0 && i.push(...t.somas), t.dendrites && t.dendrites.length > 0 && i.push(...t.dendrites), i = d(i), s = t.somas;
227
+ const a = this.findComponents(t, o, i, s), r = this.findAllIdsFromConnectivity(t);
228
228
  this.createLabelLookup(e, r).then((l) => {
229
- this.origins = n.map(
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+ this.origins = i.map(
230
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  (c) => this.createLabelFromNeuralNode(c, l)
231
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  ).sort(p), this.components = a.map(
232
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  (c) => this.createLabelFromNeuralNode(c, l)
233
233
  ).sort(p), this.destinations = o.map(
234
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  (c) => this.createLabelFromNeuralNode(c, l)
235
- ).sort(p), this.flattenAndFindDatasets(n, a, o), i({
235
+ ).sort(p), this.flattenAndFindDatasets(i, a, o), n({
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236
  ids: {
237
- dendrites: n,
237
+ dendrites: i,
238
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  components: a,
239
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  axons: o
240
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  },
@@ -251,8 +251,8 @@ let N = function() {
251
251
  if (e.length === 1)
252
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  t += `'${e[0]}')`;
253
253
  else if (e.length > 1)
254
- for (let i in e)
255
- t += `'${e[i]}'${i >= e.length - 1 ? ")" : ","} `;
254
+ for (let n in e)
255
+ t += `'${e[n]}'${n >= e.length - 1 ? ")" : ","} `;
256
256
  return t;
257
257
  }, this.buildPubmedSqlStatementForModels = function(e) {
258
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  return `select distinct publication from publications where entity = '${e}'`;
@@ -264,8 +264,8 @@ let N = function() {
264
264
  "Content-Type": "application/json"
265
265
  },
266
266
  body: JSON.stringify(t)
267
- }).then((i) => i.json()).catch((i) => {
268
- console.error("Error:", i);
267
+ }).then((n) => n.json()).catch((n) => {
268
+ console.error("Error:", n);
269
269
  });
270
270
  };
271
271
  };
@@ -290,7 +290,7 @@ const D = {
290
290
  }
291
291
  },
292
292
  computed: {
293
- ...H(b, C, I),
293
+ ...I(b, M, A),
294
294
  idNamePair() {
295
295
  return this.splitFlowStore.idNamePair;
296
296
  },
@@ -308,7 +308,7 @@ const D = {
308
308
  }
309
309
  },
310
310
  mounted: function() {
311
- h.on("startHelp", () => {
311
+ f.on("startHelp", () => {
312
312
  this.startHelp();
313
313
  }), this.multiflatmapRef = this.$refs.multiflatmap, this.flatmapRef = this.$refs.flatmap, this.scaffoldRef = this.$refs.scaffold, this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities;
314
314
  },
@@ -318,13 +318,13 @@ const D = {
318
318
  getState: function() {
319
319
  },
320
320
  openMap: function(e) {
321
- e === "SYNC" ? (this.toggleSyncMode(), this.trackOpenMap("toggle_map_sync_mode")) : (h.emit("OpenNewMap", e), this.trackOpenMap(`open_new_${e}_map`));
321
+ e === "SYNC" ? (this.toggleSyncMode(), this.trackOpenMap("toggle_map_sync_mode")) : (f.emit("OpenNewMap", e), this.trackOpenMap(`open_new_${e}_map`));
322
322
  },
323
323
  onMapmanagerLoaded: function(e) {
324
324
  this.settingsStore.updateMapManager(e);
325
325
  },
326
326
  trackOpenMap: function(e) {
327
- M.sendEvent({
327
+ C.sendEvent({
328
328
  event: "interaction_event",
329
329
  event_name: "portal_maps_open_map",
330
330
  category: e,
@@ -349,12 +349,12 @@ const D = {
349
349
  */
350
350
  resourceSelected: function(e, t) {
351
351
  var a, r, l, c;
352
- const i = t[0];
353
- if (this.resourceHasAction(i)) {
354
- h.emit("PopoverActionClick", i);
352
+ const n = t[0];
353
+ if (this.resourceHasAction(n)) {
354
+ f.emit("PopoverActionClick", n);
355
355
  return;
356
356
  }
357
- let n, o = !1;
357
+ let i, o = !1;
358
358
  const s = {
359
359
  paneIndex: this.entry.id,
360
360
  type: e,
@@ -363,41 +363,41 @@ const D = {
363
363
  eventType: void 0
364
364
  };
365
365
  if (e == "MultiFlatmap" || e == "Flatmap")
366
- if (s.internalName = (a = i == null ? void 0 : i.feature) != null && a.label ? i.feature.label : this.idNamePair[i.feature.models], i.eventType == "click")
367
- if (s.eventType = "selected", i.feature.type == "marker") {
368
- let u = s.internalName;
369
- if (this.settingsStore.isFeaturedMarkerIdentifier(i.feature.id))
370
- n = {
366
+ if (s.internalName = (a = n == null ? void 0 : n.feature) != null && a.label ? n.feature.label : this.idNamePair[n.feature.models], n.eventType == "click")
367
+ if (s.eventType = "selected", n.feature.type == "marker") {
368
+ let h = s.internalName;
369
+ if (this.settingsStore.isFeaturedMarkerIdentifier(n.feature.id))
370
+ i = {
371
371
  type: "Search",
372
- term: this.settingsStore.featuredMarkerDoi(i.feature.id),
372
+ term: this.settingsStore.featuredMarkerDoi(n.feature.id),
373
373
  featuredDataset: !0
374
374
  };
375
375
  else {
376
- n = {
376
+ i = {
377
377
  type: "Facet",
378
- facet: u,
378
+ facet: h,
379
379
  facetPropPath: "anatomy.organ.category.name",
380
380
  facetSubPropPath: "anatomy.organ.name",
381
381
  term: "Anatomical structure"
382
382
  };
383
- let f = /* @__PURE__ */ new Set();
384
- i.feature["marker-terms"].forEach((m) => {
385
- f.add(m.label);
386
- }), f.add(u), f.size > 0 && (n = {
383
+ let u = /* @__PURE__ */ new Set();
384
+ n.feature["marker-terms"].forEach((m) => {
385
+ u.add(m.label);
386
+ }), u.add(h), u.size > 0 && (i = {
387
387
  type: "Facets",
388
- labels: [...f]
388
+ labels: [...u]
389
389
  });
390
390
  }
391
391
  o = !0, e == "MultiFlatmap" && this.$refs.multiflatmap.getCurrentFlatmap().mapImp.clearSearchResults();
392
- } else i.feature.type == "feature" && this.syncMode && (o = !0);
393
- else i.eventType == "mouseenter" && (s.eventType = "highlighted", o = !0);
394
- else e == "Scaffold" && (i && ((((r = i.data) == null ? void 0 : r.id) === void 0 || ((l = i.data) == null ? void 0 : l.id) === "") && (i.data.id = (c = i.data) == null ? void 0 : c.group), s.internalName = i.data.id, i.data.lastActionOnMarker === !0 && (n = {
392
+ } else n.feature.type == "feature" && this.syncMode && (o = !0);
393
+ else n.eventType == "mouseenter" && (s.eventType = "highlighted", o = !0);
394
+ else e == "Scaffold" && (n && ((((r = n.data) == null ? void 0 : r.id) === void 0 || ((l = n.data) == null ? void 0 : l.id) === "") && (n.data.id = (c = n.data) == null ? void 0 : c.group), s.internalName = n.data.id, n.data.lastActionOnMarker === !0 && (i = {
395
395
  type: "Facet",
396
- facet: P(i.data.id),
396
+ facet: P(n.data.id),
397
397
  facetPropPath: "anatomy.organ.category.name",
398
398
  term: "Anatomical structure"
399
399
  })), s.eventType = "selected", o = !0);
400
- n && h.emit("PopoverActionClick", n), o && this.$emit("resource-selected", s);
400
+ i && f.emit("PopoverActionClick", i), o && this.$emit("resource-selected", s);
401
401
  },
402
402
  resourceHasAction: function(e) {
403
403
  return e.type === "URL" || e.type === "Search" || e.type === "Neuron Search" || e.type == "Facet" || e.type == "Facets";
@@ -418,8 +418,8 @@ const D = {
418
418
  getNameAndIdFromSyncData: async function(e) {
419
419
  let t = e.internalName;
420
420
  t === void 0 && e.resource && (t = e.resource.label);
421
- let i;
422
- if (e.resource && e.resource.resource && (i = e.resource.resource[0]), this.entry.type === "Scaffold") {
421
+ let n;
422
+ if (e.resource && e.resource.resource && (n = e.resource.resource[0]), this.entry.type === "Scaffold") {
423
423
  if (this.$refs.scaffold.findObjectsWithGroupName(t).length === 0) {
424
424
  if (e.resource && e.resource.feature) {
425
425
  const s = S(e.resource.feature.models);
@@ -428,43 +428,43 @@ const D = {
428
428
  let o = F(t);
429
429
  if (o)
430
430
  return o;
431
- if (i && e.eventType === "selected")
432
- return fetch(`${this.apiLocation}get-related-terms/${i}`).then((s) => s.json()).then((s) => {
431
+ if (n && e.eventType === "selected")
432
+ return fetch(`${this.apiLocation}get-related-terms/${n}`).then((s) => s.json()).then((s) => {
433
433
  var a;
434
434
  if (((a = s.uberon) == null ? void 0 : a.array.length) > 0)
435
- return t = s.uberon.array[0].name.charAt(0).toUpperCase() + s.uberon.array[0].name.slice(1), i = s.uberon.array[0].id.toUpperCase(), { id: i, name: t };
435
+ return t = s.uberon.array[0].name.charAt(0).toUpperCase() + s.uberon.array[0].name.slice(1), n = s.uberon.array[0].id.toUpperCase(), { id: n, name: t };
436
436
  });
437
437
  }
438
438
  } else if (this.entry.type === "MultiFlatmap")
439
439
  if (t === "Bladder")
440
440
  t = "Urinary Bladder";
441
441
  else {
442
- const n = S(t);
443
- n.length > 0 && (t = n[0]);
442
+ const i = S(t);
443
+ i.length > 0 && (t = i[0]);
444
444
  }
445
- return { id: i, name: t };
445
+ return { id: n, name: t };
446
446
  },
447
447
  // Get the species and andaotmy info for the featured datasets
448
448
  getDatasetAnatomyInfo: function(e) {
449
449
  fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${e}`).then((t) => t.json()).then((t) => {
450
- const i = t.result[0];
451
- let n;
450
+ const n = t.result[0];
451
+ let i;
452
452
  try {
453
- n = i.anatomy.organ[0].curie;
453
+ i = n.anatomy.organ[0].curie;
454
454
  } catch {
455
- n = void 0;
455
+ i = void 0;
456
456
  }
457
457
  let o;
458
458
  try {
459
- o = i.item.curie;
459
+ o = n.item.curie;
460
460
  } catch {
461
461
  o = void 0;
462
462
  }
463
463
  let s;
464
464
  try {
465
465
  let a = 0, r = !1;
466
- for (; !r && a < i.organisms.subject.length; ) {
467
- const l = i.organisms.subject[a];
466
+ for (; !r && a < n.organisms.subject.length; ) {
467
+ const l = n.organisms.subject[a];
468
468
  l.species && (s = l.species.name, r = !0), a += 1;
469
469
  }
470
470
  } catch {
@@ -472,7 +472,7 @@ const D = {
472
472
  }
473
473
  this.settingsStore.updateFeaturedMarker({
474
474
  identifier: e,
475
- marker: n,
475
+ marker: i,
476
476
  doi: o,
477
477
  species: s
478
478
  });
@@ -486,7 +486,7 @@ const D = {
486
486
  // Check if the new featured dataset api has any info
487
487
  newFeaturedDatasetApiHasInfo: async function() {
488
488
  let t = await (await fetch(`${this.apiLocation}get_featured_dataset`)).json();
489
- return !t.datasets || t.datasets.length == 0 ? !1 : t.datasets.map((i) => i.id);
489
+ return !t.datasets || t.datasets.length == 0 ? !1 : t.datasets.map((n) => n.id);
490
490
  },
491
491
  /**
492
492
  * Get a list of featured datasets to display.
@@ -495,11 +495,11 @@ const D = {
495
495
  let e = [], t = await this.oldFeaturedDatasetApiHasInfo();
496
496
  if (t) e = t;
497
497
  else {
498
- let i = await this.newFeaturedDatasetApiHasInfo();
499
- i && (e = i);
498
+ let n = await this.newFeaturedDatasetApiHasInfo();
499
+ n && (e = n);
500
500
  }
501
- this.settingsStore.updateFeatured(e), e.forEach((i) => {
502
- this.getDatasetAnatomyInfo(i);
501
+ this.settingsStore.updateFeatured(e), e.forEach((n) => {
502
+ this.getDatasetAnatomyInfo(n);
503
503
  });
504
504
  },
505
505
  zoomToFeatures: function() {
@@ -558,15 +558,15 @@ const D = {
558
558
  checkEndHelpMouseDown: function(e) {
559
559
  e.target.closest(".help-mode-dialog") || this.endHelp();
560
560
  },
561
- flatmapHighlight: async function(e, t, i, n) {
562
- let o = [...t, ...n];
561
+ flatmapHighlight: async function(e, t, n, i) {
562
+ let o = [...t, ...i];
563
563
  const s = this.settingsStore.globalSettings;
564
564
  if (s.highlightConnectedPaths) {
565
- const a = t.length ? t : n.length ? n : [], r = await e.retrieveConnectedPaths(a);
565
+ const a = t.length ? t : i.length ? i : [], r = await e.retrieveConnectedPaths(a);
566
566
  r && o.push(...r);
567
567
  }
568
568
  if (s.highlightDOIPaths) {
569
- const a = await e.searchConnectivitiesByReference(i);
569
+ const a = await e.searchConnectivitiesByReference(n);
570
570
  a && o.push(...a);
571
571
  }
572
572
  return o = [...new Set(o)], o;
@@ -574,87 +574,56 @@ const D = {
574
574
  cardHoverHighlight: function() {
575
575
  var e;
576
576
  if (this.visible) {
577
- const t = this.settingsStore.hoverAnatomies, i = this.settingsStore.hoverOrgans, n = this.settingsStore.hoverDOI, o = this.settingsStore.hoverConnectivity;
577
+ const t = this.settingsStore.hoverAnatomies, n = this.settingsStore.hoverOrgans, i = this.settingsStore.hoverDOI, o = this.settingsStore.hoverConnectivity;
578
578
  let s = null, a = null;
579
- this.flatmapRef && (s = this.flatmapRef), this.multiflatmapRef && (s = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (a = this.scaffoldRef), clearTimeout(this.highlightDelay), !t.length && !i.length && !n && !o.length && ((this.multiflatmapRef || this.flatmapRef) && s ? (e = s.mapImp) == null || e.clearSearchResults() : this.scaffoldRef && a && a.changeHighlightedByName(i, "", !1)), this.highlightDelay = setTimeout(() => {
580
- (t.length || i.length || n || o.length) && ((this.multiflatmapRef || this.flatmapRef) && s ? this.flatmapHighlight(s, t, n, o).then((r) => {
579
+ this.flatmapRef && (s = this.flatmapRef), this.multiflatmapRef && (s = this.multiflatmapRef.getCurrentFlatmap()), this.scaffoldRef && (a = this.scaffoldRef), clearTimeout(this.highlightDelay), !t.length && !n.length && !i && !o.length && ((this.multiflatmapRef || this.flatmapRef) && s ? (e = s.mapImp) == null || e.clearSearchResults() : this.scaffoldRef && a && a.changeHighlightedByName(n, "", !1)), this.highlightDelay = setTimeout(() => {
580
+ (t.length || n.length || i || o.length) && ((this.multiflatmapRef || this.flatmapRef) && s ? this.flatmapHighlight(s, t, i, o).then((r) => {
581
581
  try {
582
582
  s.zoomToFeatures(r);
583
583
  } catch (l) {
584
584
  if (console.log(l), o.length && s.mapImp) {
585
585
  const c = s.mapImp.uuid;
586
586
  r.every(
587
- (f) => this.connectivityKnowledge[c].some(
588
- (m) => m.id === f
587
+ (u) => this.connectivityKnowledge[c].some(
588
+ (m) => m.id === u
589
589
  )
590
590
  ) || s.mapImp.clearSearchResults();
591
591
  }
592
592
  }
593
- }) : this.scaffoldRef && a && a.changeHighlightedByName(i, "", !1));
593
+ }) : this.scaffoldRef && a && a.changeHighlightedByName(n, "", !1));
594
594
  }, 100);
595
595
  }
596
596
  },
597
597
  onAnnotationOpen: function(e) {
598
- h.emit("annotation-open", e);
598
+ f.emit("annotation-open", e);
599
599
  },
600
600
  onAnnotationClose: function() {
601
- h.emit("annotation-close");
601
+ f.emit("annotation-close");
602
602
  },
603
603
  onConnectivityInfoOpen: function(e) {
604
- h.emit("connectivity-info-open", e);
604
+ f.emit("connectivity-info-open", e);
605
605
  },
606
606
  onConnectivityError: function(e) {
607
- h.emit("connectivity-error", e);
607
+ f.emit("connectivity-error", e);
608
608
  },
609
609
  onConnectivityInfoClose: function() {
610
- h.emit("connectivity-info-close");
610
+ f.emit("connectivity-info-close");
611
611
  },
612
612
  loadConnectivityKnowledge: async function(e) {
613
- const t = A(e), i = w(new N());
614
- i.initialise(this.flatmapAPI);
615
- const n = await $(e, i), o = e.uuid;
616
- if (this.connectivityKnowledge[t] || (this.connectivityKnowledge[t] = n.filter((s) => {
613
+ const t = $(e), n = v(new N());
614
+ n.initialise(this.flatmapAPI);
615
+ const i = await H(e, n), o = e.uuid;
616
+ if (this.connectivityKnowledge[t] || (this.connectivityKnowledge[t] = i.filter((s) => {
617
617
  var a;
618
618
  return s.source === t && ((a = s.connectivity) == null ? void 0 : a.length);
619
619
  }).sort((s, a) => s.label.localeCompare(a.label))), !this.connectivitiesStore.globalConnectivities[o]) {
620
- const s = await i.queryMapPaths(o), a = s ? s.paths : {};
621
- this.connectivityKnowledge[o] = n.filter((r) => {
620
+ const s = await n.queryMapPaths(o), a = s ? s.paths : {};
621
+ this.connectivityKnowledge[o] = i.filter((r) => {
622
622
  var l;
623
623
  return r.source === t && ((l = r.connectivity) == null ? void 0 : l.length) && r.id in a;
624
624
  }).sort((r, l) => r.label.localeCompare(l.label));
625
625
  }
626
- this.connectivitiesStore.updateGlobalConnectivities(this.connectivityKnowledge), h.emit("species-layout-connectivity-update");
627
- },
628
- getSearchedId: function(e, t) {
629
- let i = [];
630
- const n = e.mapImp.search(t);
631
- return (n.__featureIds || n.featureIds).forEach((s) => {
632
- var r;
633
- const a = e.mapImp.annotation(s);
634
- (r = a.label) != null && r.toLowerCase().includes(t.toLowerCase()) && a.models && !i.includes(a.models) && i.push(a.models);
635
- }), i;
636
- },
637
- connectivityQueryFilter: async function(e, t) {
638
- const i = this.connectivitiesStore.getUniqueConnectivitiesByKeys;
639
- if (e.$el.checkVisibility()) {
640
- let n = {
641
- state: "default",
642
- data: [...i]
643
- };
644
- if (t && (t.type === "query-update" ? (this.query !== t.value && (this.target = []), this.query = t.value) : t.type === "filter-update" && (this.filter = t.value)), this.query) {
645
- n.state = "processed";
646
- let o = [], s = {};
647
- const a = this.query.split(",").map((f) => f.trim());
648
- for (let f = 0; f < a.length; f++)
649
- o.push(this.getSearchedId(e, a[f]));
650
- const r = await Promise.all(o), l = [...new Set(r.flat())];
651
- let c = await e.retrieveConnectedPaths(l, s);
652
- c = [...l, ...c.filter((f) => !l.includes(f))];
653
- let u = i.filter((f) => c.includes(f.id));
654
- n.data = u;
655
- }
656
- h.emit("connectivity-knowledge", n);
657
- }
626
+ this.connectivitiesStore.updateGlobalConnectivities(this.connectivityKnowledge), f.emit("species-layout-connectivity-update");
658
627
  }
659
628
  },
660
629
  data: function() {
@@ -677,8 +646,6 @@ const D = {
677
646
  isInHelp: !1,
678
647
  mapManager: void 0,
679
648
  connectivityKnowledge: {},
680
- query: "",
681
- filter: [],
682
649
  highlightDelay: void 0
683
650
  };
684
651
  },