@abi-software/mapintegratedvuer 1.9.0-beta.3 → 1.9.0-beta.4

package/dist/{ContentMixin-EguyU2f9.js → ContentMixin-DhjA4yzK.js}

@@ -1,14 +1,14 @@
 import { markRaw as b } from "vue";
-import { u as I, b as M, E as h, T as F, c as w, d as A } from "./index-BxnKKH6I.js";
-import { mapStores as C } from "pinia";
+import { u as I, o as M, a as h, T as F, p as y, q as C } from "./index-DyEtZe9i.js";
+import { mapStores as A } from "pinia";
 const d = function(e) {
   return e ? [...new Set(e.map((t) => JSON.stringify(t)))].map(
     (t) => JSON.parse(t)
   ) : [];
-}, g = [], S = async function(e, t) {
+}, m = [], w = async function(e, t) {
   const n = t.filter(
-    (o) => g.some((a) => a.taxon === o)
-  ), i = g.filter(
+    (o) => m.some((a) => a.taxon === o)
+  ), i = m.filter(
     (o) => n.includes(o.taxon)
   ), s = t.filter(
     (o) => !n.includes(o)
@@ -20,11 +20,11 @@ const d = function(e) {
         let { entity: r, label: l } = a;
         l === "Mammalia" && (l = "Mammalia not otherwise specified");
         const c = { taxon: r, label: l };
-        i.push(c), g.push(c);
+        i.push(c), m.push(c);
       }), i;
   } else
     return i;
-}, y = function(e, t) {
+}, g = function(e, t) {
   if (!e || !t) return !1;
   let n = JSON.stringify(e), i = JSON.stringify(t);
   return n.indexOf(i) !== -1;
@@ -42,7 +42,7 @@ let $ = function() {
     if (t.provenanceTaxonomy) {
       i = [];
       try {
-        const o = await S(e, t.provenanceTaxonomy);
+        const o = await w(e, t.provenanceTaxonomy);
         o.length && o.forEach((a) => {
           const { label: r } = a;
           i.push(r);
@@ -85,7 +85,7 @@ let $ = function() {
     return new Promise(async (n) => {
       let i = {};
       this.uberons = [];
-      const s = await S(e, t);
+      const s = await w(e, t);
       s.length && (s.forEach((o) => {
         const { taxon: a, label: r } = o;
         i[a] = r, this.uberons.push({
@@ -123,7 +123,7 @@ let $ = function() {
   }, this.findComponents = function(e, t, n, i) {
     let s = e.connectivity.flat(), o = d(s), a = [], r = !1;
     return o.forEach((l) => {
-      r = !1, y(t, l) && (r = !0), i && y(i, l) && (r = !0), y(n, l) && (r = !0), r || a.push(l);
+      r = !1, g(t, l) && (r = !0), i && g(i, l) && (r = !0), g(n, l) && (r = !0), r || a.push(l);
     }), a;
   }, this.retrieveFlatmapKnowledgeForEvent = async function(e, t) {
     this.controller && this.controller.abort(), this.controller = new AbortController(), this.controller.signal;
@@ -269,7 +269,7 @@ let $ = function() {
     });
   };
 };
-function v(e) {
+function S(e) {
   var n;
   let t = "";
   if ((n = e.provenance) != null && n.connectivity) {
@@ -279,10 +279,10 @@ function v(e) {
   return t;
 }
 async function H(e, t) {
-  const n = v(e), i = `select knowledge from knowledge
+  const n = S(e), i = `select knowledge from knowledge
     where source="${n}"
     order by source desc`;
-  E();
+  P();
   const s = sessionStorage.getItem("flatmap-knowledge"), o = sessionStorage.getItem("flatmap-knowledge-source");
   if (!s || o !== n) {
     const l = (await t.flatmapQuery(i)).values.map((c) => c[0]).map((c) => JSON.parse(c));
@@ -303,14 +303,14 @@ function T() {
     sessionStorage.removeItem(t);
   });
 }
-function E() {
+function P() {
   const e = sessionStorage.getItem("flatmap-knowledge-expiry");
   (/* @__PURE__ */ new Date()).getTime() > e && T();
 }
-function P(e) {
+function E(e) {
   return e[0].toUpperCase() + e.substring(1);
 }
-const k = {
+const x = {
   emits: ["flatmap-provenance-ready", "resource-selected", "species-changed"],
   props: {
     /**
@@ -328,7 +328,7 @@ const k = {
     }
   },
   computed: {
-    ...C(I, M),
+    ...A(I, M),
     idNamePair() {
       return this.splitFlowStore.idNamePair;
     },
@@ -419,8 +419,8 @@ const k = {
                 term: "Anatomical structure"
               };
               let f = /* @__PURE__ */ new Set();
-              n.feature["marker-terms"].forEach((m) => {
-                f.add(m.label);
+              n.feature["marker-terms"].forEach((v) => {
+                f.add(v.label);
               }), f.add(u), f.size > 0 && (i = {
                 type: "Facets",
                 labels: [...f]
@@ -431,7 +431,7 @@ const k = {
         else n.eventType == "mouseenter" && (o.eventType = "highlighted", s = !0);
       else e == "Scaffold" && (n && ((((r = n.data) == null ? void 0 : r.id) === void 0 || ((l = n.data) == null ? void 0 : l.id) === "") && (n.data.id = (c = n.data) == null ? void 0 : c.group), o.internalName = n.data.id, n.data.lastActionOnMarker === !0 && (i = {
         type: "Facet",
-        facet: P(n.data.id),
+        facet: E(n.data.id),
         facetPropPath: "anatomy.organ.category.name",
         term: "Anatomical structure"
       })), o.eventType = "selected", s = !0);
@@ -460,10 +460,10 @@ const k = {
       if (e.resource && e.resource.resource && (n = e.resource.resource[0]), this.entry.type === "Scaffold") {
         if (this.$refs.scaffold.findObjectsWithGroupName(t).length === 0) {
           if (e.resource && e.resource.feature) {
-            const o = w(e.resource.feature.models);
+            const o = y(e.resource.feature.models);
             if (o.length > 0) return o;
           }
-          let s = A(t);
+          let s = C(t);
           if (s)
             return s;
           if (n && e.eventType === "selected")
@@ -477,7 +477,7 @@ const k = {
         if (t === "Bladder")
           t = "Urinary Bladder";
         else {
-          const i = w(t);
+          const i = y(t);
           i.length > 0 && (t = i[0]);
         }
       return { id: n, name: t };
@@ -634,17 +634,17 @@ const k = {
     onConnectivityInfoOpen: function(e) {
       h.emit("connectivity-info-open", e);
     },
-    onConnectivityGraphError: function(e) {
-      h.emit("connectivity-graph-error", e);
+    onConnectivityError: function(e) {
+      h.emit("connectivity-error", e);
     },
     loadConnectivityKnowledge: async function(e) {
-      const t = v(e), n = b(new $());
+      const t = S(e), n = b(new $());
       n.initialise(this.flatmapAPI);
       const i = await H(e, n), s = e.uuid, o = await n.queryMapPaths(s), a = o ? o.paths : {};
       this.connectivityKnowledge[s] = i.filter((r) => {
         var l;
-        return !!(r.source === t && ((l = r.connectivity) != null && l.length) && r.id in a);
-      }), h.emit("connectivity-knowledge", { type: "default", data: this.connectivityKnowledge[s] });
+        return r.source === t && ((l = r.connectivity) == null ? void 0 : l.length) && r.id in a;
+      }).sort((r, l) => r.label.localeCompare(l.label)), h.emit("connectivity-knowledge", { data: this.connectivityKnowledge[s] });
     },
     getSearchedId: function(e, t) {
       let n = [];
@@ -671,7 +671,7 @@ const k = {
         let c = await e.retrieveConnectedPaths(l, o);
         c = [...l, ...c.filter((f) => !l.includes(f))];
         let u = this.connectivityKnowledge[n].filter((f) => c.includes(f.id));
-        u.sort((f, m) => c.indexOf(f.id) - c.indexOf(m.id)), i.data = u;
+        i.data = u;
       }
       h.emit("connectivity-knowledge", i);
     }
@@ -711,5 +711,5 @@ const k = {
   }
 };
 export {
-  k as C
+  x as C
 };

package/dist/{Flatmap-B2rxO-O0.js → Flatmap-CuufZrlg.js}

@@ -1,7 +1,7 @@
-import { _ as c, G as h, t as u, T as l, E as r } from "./index-BxnKKH6I.js";
-import { C as g } from "./ContentMixin-EguyU2f9.js";
-import { D as M, p as I } from "./style-DTctIWuz.js";
-import { resolveComponent as p, openBlock as s, createElementBlock as y, createVNode as v, createBlock as S, createCommentVNode as C } from "vue";
+import { _ as c, E as h, t as u, T as l, a as r } from "./index-DyEtZe9i.js";
+import { C as g } from "./ContentMixin-DhjA4yzK.js";
+import { D as M, N as I } from "./style-DouK-b65.js";
+import { resolveComponent as s, openBlock as p, createElementBlock as y, createVNode as v, createBlock as S, createCommentVNode as C } from "vue";
 const F = {
   name: "Flatmap",
   mixins: [g, M],
@@ -116,8 +116,8 @@ const F = {
   }
 }, w = { class: "viewer-container" };
 function b(e, a, n, t, i, o) {
-  const m = p("FlatmapVuer"), f = p("HelpModeDialog");
-  return s(), y("div", w, [
+  const m = s("FlatmapVuer"), f = s("HelpModeDialog");
+  return p(), y("div", w, [
     v(m, {
       state: e.entry.state,
       entry: e.entry.resource,
@@ -138,7 +138,7 @@ function b(e, a, n, t, i, o) {
       onAnnotationClose: e.onAnnotationClose,
       annotationSidebar: e.annotationSidebar,
       onConnectivityInfoOpen: e.onConnectivityInfoOpen,
-      onConnectivityGraphError: e.onConnectivityGraphError,
+      onConnectivityError: e.onConnectivityError,
       connectivityInfoSidebar: e.connectivityInfoSidebar,
       pathControls: !0,
       ref: "flatmap",
@@ -151,8 +151,8 @@ function b(e, a, n, t, i, o) {
       onOpenMap: e.openMap,
       onPathwaySelectionChanged: o.onPathwaySelectionChanged,
       onMapmanagerLoaded: e.onMapmanagerLoaded
-    }, null, 8, ["state", "entry", "mapManager", "onPanZoomCallback", "name", "minZoom", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityGraphError", "connectivityInfoSidebar", "onReady", "flatmapAPI", "sparcAPI", "onOpenMap", "onPathwaySelectionChanged", "onMapmanagerLoaded"]),
-    e.helpMode && e.useHelpModeDialog ? (s(), S(f, {
+    }, null, 8, ["state", "entry", "mapManager", "onPanZoomCallback", "name", "minZoom", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "connectivityInfoSidebar", "onReady", "flatmapAPI", "sparcAPI", "onOpenMap", "onPathwaySelectionChanged", "onMapmanagerLoaded"]),
+    e.helpMode && e.useHelpModeDialog ? (p(), S(f, {
       key: 0,
       ref: "flatmapHelp",
       flatmapRef: e.flatmapRef,
@@ -162,7 +162,7 @@ function b(e, a, n, t, i, o) {
     }, null, 8, ["flatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : C("", !0)
   ]);
 }
-const k = /* @__PURE__ */ c(F, [["render", b], ["__scopeId", "data-v-393c126c"]]);
+const k = /* @__PURE__ */ c(F, [["render", b], ["__scopeId", "data-v-b420acb4"]]);
 export {
   k as default
 };

package/dist/{Iframe-BPdpAMF2.js → Iframe-Bapq0lQY.js}

@@ -1,6 +1,6 @@
-import { C as r } from "./ContentMixin-EguyU2f9.js";
+import { C as r } from "./ContentMixin-DhjA4yzK.js";
 import { openBlock as o, createElementBlock as t, createElementVNode as s } from "vue";
-import { _ as n } from "./index-BxnKKH6I.js";
+import { _ as n } from "./index-DyEtZe9i.js";
 const a = {
   name: "Iframe",
   mixins: [r]

package/dist/{MultiFlatmap-DeEDa4_P.js → MultiFlatmap-DXrn4QYP.js}

@@ -1,6 +1,6 @@
-import { _ as u, G as h, a as y, g, E as s, t as M, T as p } from "./index-BxnKKH6I.js";
-import { C as v } from "./ContentMixin-EguyU2f9.js";
-import { D as I, A as C } from "./style-DTctIWuz.js";
+import { _ as u, E as h, b as y, g, a as s, t as M, T as p } from "./index-DyEtZe9i.js";
+import { C as v } from "./ContentMixin-DhjA4yzK.js";
+import { D as I, F as C } from "./style-DouK-b65.js";
 import { resolveComponent as f, openBlock as c, createElementBlock as S, createVNode as F, createBlock as w, createCommentVNode as k } from "vue";
 const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', d = (e) => {
   const t = [
@@ -329,7 +329,7 @@ function L(e, t, a, n, o, i) {
       onAnnotationClose: e.onAnnotationClose,
       annotationSidebar: e.annotationSidebar,
       onConnectivityInfoOpen: e.onConnectivityInfoOpen,
-      onConnectivityGraphError: e.onConnectivityGraphError,
+      onConnectivityError: e.onConnectivityError,
       connectivityInfoSidebar: e.connectivityInfoSidebar,
       ref: "multiflatmap",
       displayMinimap: !0,
@@ -344,7 +344,7 @@ function L(e, t, a, n, o, i) {
       onPathwaySelectionChanged: i.onPathwaySelectionChanged,
       onOpenPubmedUrl: i.onOpenPubmedUrl,
       onMapmanagerLoaded: e.onMapmanagerLoaded
-    }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "mapManager", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityGraphError", "connectivityInfoSidebar", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl", "onMapmanagerLoaded"]),
+    }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "mapManager", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityError", "connectivityInfoSidebar", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl", "onMapmanagerLoaded"]),
     e.helpMode && e.useHelpModeDialog ? (c(), w(l, {
       key: 0,
       ref: "multiflatmapHelp",
@@ -355,7 +355,7 @@ function L(e, t, a, n, o, i) {
     }, null, 8, ["multiflatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : k("", !0)
   ]);
 }
-const T = /* @__PURE__ */ u(b, [["render", L], ["__scopeId", "data-v-7b3be366"]]);
+const T = /* @__PURE__ */ u(b, [["render", L], ["__scopeId", "data-v-5da34951"]]);
 export {
   T as default
 };

package/dist/{Plot-C6R5QybS.js → Plot-aSDizBaA.js}

@@ -1,7 +1,7 @@
 import { PlotVuer as o } from "@abi-software/plotvuer";
-import { C as r } from "./ContentMixin-EguyU2f9.js";
+import { C as r } from "./ContentMixin-DhjA4yzK.js";
 import { resolveComponent as a, openBlock as n, createBlock as s } from "vue";
-import { _ as m } from "./index-BxnKKH6I.js";
+import { _ as m } from "./index-DyEtZe9i.js";
 const p = {
   name: "Plot",
   mixins: [r],