@abi-software/mapintegratedvuer 1.6.0-sim2-1 → 1.6.1

package/dist/{ContentMixin-BPFt-RUj.js → ContentMixin-BTXCMWvE.js}

@@ -1,4 +1,5 @@
-import { u as p, d as g, E as l, T as y, e as m, f as w } from "./index-Fw8GJEyq.js";
+import "vue";
+import { u as p, b as g, E as l, T as y, d as m, e as w } from "./index-D_VgD-w_.js";
 import { mapStores as A } from "pinia";
 let c = 7, s = 5;
 const N = [
@@ -285,6 +286,9 @@ const B = {
     },
     connectivityInfoSidebar() {
       return this.settingsStore.connectivityInfoSidebar;
+    },
+    annotationSidebar() {
+      return this.settingsStore.annotationSidebar;
     }
   },
   mounted: function() {
@@ -537,6 +541,12 @@ const B = {
         }, 500);
       }
     },
+    onAnnotationOpen: function(e) {
+      l.emit("annotation-open", e);
+    },
+    onAnnotationClose: function() {
+      l.emit("annotation-close");
+    },
     onConnectivityInfoOpen: function(e) {
       l.emit("connectivity-info-open", e);
     },

package/dist/{Flatmap-qGnhSBev.js → Flatmap-BPYW-zJs.js}

@@ -1,8 +1,8 @@
-import { _ as c, C as h, t as u, T as s, E as l } from "./index-Fw8GJEyq.js";
-import { C as I } from "./ContentMixin-BPFt-RUj.js";
-import { D as y, L as g } from "./style-yUf7xZ7d.js";
+import { _ as c, $ as h, t as u, T as s, E as l } from "./index-D_VgD-w_.js";
+import { C as I } from "./ContentMixin-BTXCMWvE.js";
+import { D as y, Q as g } from "./style-ZSZlDMUI.js";
 import { resolveComponent as p, openBlock as r, createElementBlock as M, createVNode as v, createBlock as S, createCommentVNode as C } from "vue";
-const w = {
+const F = {
   name: "Flatmap",
   mixins: [I, y],
   components: {
@@ -106,10 +106,10 @@ const w = {
       });
     });
   }
-}, F = { class: "viewer-container" };
-function H(e, t, o, a, n, i) {
+}, w = { class: "viewer-container" };
+function $(e, t, o, a, n, i) {
   const m = p("FlatmapVuer"), f = p("HelpModeDialog");
-  return r(), M("div", F, [
+  return r(), M("div", w, [
     v(m, {
       state: e.entry.state,
       entry: e.entry.resource,
@@ -149,7 +149,7 @@ function H(e, t, o, a, n, i) {
     }, null, 8, ["flatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : C("", !0)
   ]);
 }
-const P = /* @__PURE__ */ c(w, [["render", H], ["__scopeId", "data-v-d49919d0"]]);
+const P = /* @__PURE__ */ c(F, [["render", $], ["__scopeId", "data-v-d49919d0"]]);
 export {
   P as default
 };

package/dist/{Iframe-BlUcXHyz.js → Iframe-BZW4KSMI.js}

@@ -1,6 +1,6 @@
-import { C as r } from "./ContentMixin-BPFt-RUj.js";
+import { C as r } from "./ContentMixin-BTXCMWvE.js";
 import { openBlock as o, createElementBlock as t, createElementVNode as s } from "vue";
-import { _ as n } from "./index-Fw8GJEyq.js";
+import { _ as n } from "./index-D_VgD-w_.js";
 const a = {
   name: "Iframe",
   mixins: [r]

package/dist/{MultiFlatmap-BHpWg0EN.js → MultiFlatmap-DIlQi9RY.js}

@@ -1,8 +1,8 @@
-import { _ as u, C as h, a as y, g, E as s, t as M, T as p } from "./index-Fw8GJEyq.js";
-import { C as v } from "./ContentMixin-BPFt-RUj.js";
-import { D as I, a as S } from "./style-yUf7xZ7d.js";
-import { resolveComponent as f, openBlock as c, createElementBlock as C, createVNode as F, createBlock as k, createCommentVNode as w } from "vue";
-const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', d = (e) => {
+import { _ as M, $ as I, a as C, g as S, E as r, t as F, T as f, c as u } from "./index-D_VgD-w_.js";
+import { C as k } from "./ContentMixin-BTXCMWvE.js";
+import { D as b, P as w } from "./style-ZSZlDMUI.js";
+import { resolveComponent as d, openBlock as h, createElementBlock as R, createVNode as H, createBlock as $, createCommentVNode as P } from "vue";
+const T = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><path d="M11.0748 3.25583C11.4141 2.42845 12.5859 2.42845 12.9252 3.25583L14.6493 7.45955C14.793 7.80979 15.1221 8.04889 15.4995 8.07727L20.0303 8.41798C20.922 8.48504 21.2841 9.59942 20.6021 10.1778L17.1369 13.1166C16.8482 13.3614 16.7225 13.7483 16.8122 14.1161L17.8882 18.5304C18.1 19.3992 17.152 20.0879 16.3912 19.618L12.5255 17.2305C12.2034 17.0316 11.7966 17.0316 11.4745 17.2305L7.60881 19.618C6.84796 20.0879 5.90001 19.3992 6.1118 18.5304L7.18785 14.1161C7.2775 13.7483 7.1518 13.3614 6.86309 13.1166L3.3979 10.1778C2.71588 9.59942 3.07796 8.48504 3.96971 8.41798L8.50046 8.07727C8.87794 8.04889 9.20704 7.80979 9.35068 7.45955L11.0748 3.25583Z" stroke="#000000" stroke-width="2"/></svg>', g = (e) => {
   const t = [
     {
       display: "Open AC Map",
@@ -28,21 +28,21 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       break;
   }
   return t;
-}, b = {
+}, L = {
   name: "MultiFlatmap",
-  mixins: [v, I],
+  mixins: [k, b],
   components: {
-    MultiFlatmapVuer: S,
-    HelpModeDialog: h
+    MultiFlatmapVuer: w,
+    HelpModeDialog: I
   },
   data: function() {
     return {
       zoomLevel: 6,
       flatmapReady: !1,
-      availableSpecies: y(),
+      availableSpecies: C(),
       scaffoldResource: {},
       showStarInLegend: !1,
-      openMapOptions: d("Human Male")
+      openMapOptions: g("Human Male")
     };
   },
   methods: {
@@ -60,7 +60,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
           title: "View 3D scaffold",
           layout: "2horpanel",
           type: "SyncMap"
-        } : (this.activeSpecies === "Human Male" || this.activeSpecies === "Human Female") && ("human" in this.scaffoldResource || (this.scaffoldResource.human = await g(this.apiLocation, "human")), e = {
+        } : (this.activeSpecies === "Human Male" || this.activeSpecies === "Human Female") && ("human" in this.scaffoldResource || (this.scaffoldResource.human = await S(this.apiLocation, "human")), e = {
           contextCardUrl: this.scaffoldResource.human.datasetInfo.contextCardUrl,
           discoverId: this.scaffoldResource.human.datasetInfo.discoverId,
           s3uri: this.scaffoldResource.human.datasetInfo.s3uri,
@@ -71,9 +71,9 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
           layout: "2vertpanel",
           type: "SyncMap",
           isBodyScaffold: !0
-        }), e && s.emit("SyncModeRequest", { flag: !0, action: e });
+        }), e && r.emit("SyncModeRequest", { flag: !0, action: e });
       } else
-        s.emit("SyncModeRequest", { flag: !1 });
+        r.emit("SyncModeRequest", { flag: !1 });
     },
     getState: function() {
       if (this.flatmapReady) return this.$refs.multiflatmap.getState();
@@ -100,10 +100,13 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
      */
     searchSuggestions: function(e, t) {
       const a = this.$refs.multiflatmap.getCurrentFlatmap();
-      e && a.mapImp && a.mapImp.search(e).__featureIds.forEach((o) => {
-        const i = a.mapImp.annotation(o);
-        i && i.label && t.push(i.label);
-      });
+      if (e && a.mapImp) {
+        const n = a.mapImp.search(e);
+        (n.__featureIds || n.featureIds).forEach((i) => {
+          const l = a.mapImp.annotation(i);
+          l && l.label && t.push(l.label);
+        });
+      }
     },
     flatmaprResourceSelected: function(e, t) {
       const a = this.$refs.multiflatmap.getCurrentFlatmap();
@@ -114,8 +117,8 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
           featureId: t.feature.featureId || "",
           taxonomy: t.taxonomy || "",
           resources: t.resource.join(", ")
-        }, o = M(n);
-        p.sendEvent({
+        }, o = F(n);
+        f.sendEvent({
           event: "interaction_event",
           event_name: "portal_maps_connectivity",
           category: o,
@@ -125,7 +128,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
     },
     onPathwaySelectionChanged: function(e) {
       const { label: t, property: a, checked: n, selectionsTitle: o } = e;
-      p.sendEvent({
+      f.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_pathway_change",
         category: t + " [" + a + "] " + n,
@@ -133,7 +136,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       });
     },
     onOpenPubmedUrl: function(e) {
-      p.sendEvent({
+      f.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_pubmed_url",
         file_path: e,
@@ -146,12 +149,12 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
     handleSyncPanZoomEvent: function(e) {
       if (!this.mouseHovered && e.type !== this.entry.type) {
         const t = e.payload.zoom, a = e.payload.target, n = this.$el.clientHeight, o = this.$el.clientWidth, i = Math.max(o, n);
-        let r = o / i / t;
-        const l = n / i / t, m = [
-          a[0] / 2 + 0.5 - r / 2,
-          0.5 - a[1] / 2 - l / 2
+        let l = o / i / t;
+        const s = n / i / t, p = [
+          a[0] / 2 + 0.5 - l / 2,
+          0.5 - a[1] / 2 - s / 2
         ];
-        this.$refs.multiflatmap.getCurrentFlatmap().mapImp.panZoomTo(m, [r, l]);
+        this.$refs.multiflatmap.getCurrentFlatmap().mapImp.panZoomTo(p, [l, s]);
       }
     },
     displayTooltip: function(e) {
@@ -185,7 +188,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       }
     },
     flatmapChanged: async function(e) {
-      this.activeSpecies = e, this.openMapOptions = d(e), this.$emit("species-changed", e), this.entry.state && this.entry.state.species === this.activeSpecies || this.syncMode == !0 && await this.toggleSyncMode(), this.updateProvCard(), this.onConnectivityInfoClose(), p.sendEvent({
+      this.activeSpecies = e, this.openMapOptions = g(e), this.$emit("species-changed", e), this.entry.state && this.entry.state.species === this.activeSpecies || this.syncMode == !0 && await this.toggleSyncMode(), this.updateProvCard(), this.onConnectivityInfoClose(), f.sendEvent({
         event: "interaction_event",
         event_name: "portal_maps_species_change",
         category: this.activeSpecies
@@ -195,7 +198,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       if (e) {
         e.enablePanZoomEvents(!0), this.flatmapReady = !0;
         const t = e.mapImp;
-        this.flatmapMarkerUpdate(t), this.updateProvCard(), s.emit("mapLoaded", e);
+        this.flatmapMarkerUpdate(t), this.updateProvCard(), r.emit("mapLoaded", e);
       }
     },
     getFlatmapImp: function() {
@@ -208,7 +211,7 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
         label: "Unused",
         val: this.getFlatmapImp().visibleMarkerAnatomicalIds().map((n) => this.idNamePair[n])
       };
-      s.emit("PopoverActionClick", a);
+      r.emit("PopoverActionClick", a);
     },
     restoreFeaturedMarkers: function(e) {
       this.settingsStore.resetFeaturedMarkerIdentifier();
@@ -229,15 +232,15 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
       let o = a;
       if (o || (o = this.getFlatmapImp()), o) {
         let i = document.createElement("div");
-        i.innerHTML = R;
-        const r = o.addMarker(e, {
+        i.innerHTML = T;
+        const l = o.addMarker(e, {
           element: i,
           className: "highlight-marker",
           cluster: !1
         });
         return this.settingsStore.updateFeaturedMarkerIdentifier({
           index: t,
-          markerIdentifier: r
+          markerIdentifier: l
         }), !0;
       }
       return !1;
@@ -247,6 +250,73 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
      */
     changeViewingMode: function(e) {
       this.$refs.multiflatmap.getCurrentFlatmap().changeViewingMode(e);
+    },
+    removeConnectivityTooltips: function() {
+      const e = this.$refs.multiflatmap.getCurrentFlatmap();
+      e != null && e.$el && e.$el.querySelectorAll(".flatmap-tooltip-popup").forEach((a) => a.remove());
+    },
+    createTooltipForConnectivity: function(e, t) {
+      const a = document.createElement("div");
+      a.classList.add("flatmap-feature-label"), e.forEach((n, o) => {
+        const { label: i } = n;
+        if (a.append(u(i)), o + 1 < e.length) {
+          const l = document.createElement("hr");
+          a.appendChild(l);
+        }
+      }), t.showPopup(
+        e[0].featureId,
+        a,
+        {
+          className: "custom-popup flatmap-tooltip-popup",
+          positionAtLastClick: !1,
+          preserveSelection: !0
+        }
+      );
+    },
+    emitConnectivityGraphError: function(e) {
+      if (e.length) {
+        const t = [...new Set(e)];
+        let a = "";
+        t.forEach((n, o) => {
+          const { label: i } = n;
+          a += o === 0 ? u(i) : i, t.length > 1 && (o + 2 === t.length ? a += " and " : o + 1 < t.length && (a += ", "));
+        }), a += " cannot be found on the map!", r.emit("connectivity-graph-error", {
+          data: a
+        });
+      }
+    },
+    showConnectivityTooltips: function(e) {
+      const { connectivityInfo: t, data: a } = e, n = [], o = [], i = [], l = [];
+      if (!a.length)
+        this.removeConnectivityTooltips();
+      else if (typeof a[0] == "object")
+        a.forEach((s) => {
+          o.push({
+            id: s.id,
+            label: s.name
+          });
+        });
+      else
+        for (let s = 0; s < a.length / 2; s++)
+          o.push({
+            id: a[s],
+            label: a[s + a.length / 2]
+          });
+      if (t && t.featureId && n.push(...t.featureId), this.flatmapReady) {
+        const s = this.$refs.multiflatmap.getCurrentFlatmap();
+        s.mapImp && (o.forEach((p, A) => {
+          const { id: c, label: y } = p, m = s.mapImp.search(c);
+          if (m != null && m.results.length) {
+            const v = m == null ? void 0 : m.results[0].featureId;
+            i.push({
+              featureId: v,
+              id: c,
+              label: y
+            }), n.push(c);
+          } else
+            l.push(p);
+        }), i.length ? this.createTooltipForConnectivity(i, s.mapImp) : (l.push(...o), this.removeConnectivityTooltips()), this.emitConnectivityGraphError(l), s.mapImp.zoomToFeatures(n, { noZoomIn: !0 }));
+      }
     }
   },
   computed: {
@@ -266,7 +336,9 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
     }
   },
   mounted: function() {
-    this.getFeaturedDatasets(), s.on("show-connectivity", (e) => {
+    this.getFeaturedDatasets(), r.on("annotation-close", (e) => {
+      e != null && e.tabClose && this.$refs.multiflatmap.getCurrentFlatmap() && this.$refs.multiflatmap.getCurrentFlatmap().annotationEventCallback({}, { type: "aborted" });
+    }), r.on("show-connectivity", (e) => {
       const { featureIds: t, offset: a } = e;
       if (this.flatmapReady && this.$refs.multiflatmap) {
         const n = this.$refs.multiflatmap.getCurrentFlatmap();
@@ -275,22 +347,24 @@ const R = '<svg width="72px" height="72px" viewBox="0 0 24 24" fill="yellow"><pa
           zoom: 4
         });
       }
-    }), s.on("markerUpdate", () => {
+    }), r.on("connectivity-component-click", (e) => {
+      this.showConnectivityTooltips(e);
+    }), r.on("markerUpdate", () => {
       this.flatmapReady && this.flatmapMarkerUpdate(this.$refs.multiflatmap.getCurrentFlatmap().mapImp);
-    }), s.on("hoverUpdate", () => {
+    }), r.on("hoverUpdate", () => {
       this.flatmapReady && this.mapHoverHighlight(this.$refs.multiflatmap.getCurrentFlatmap().mapImp);
     });
   }
-}, H = { class: "viewer-container" };
-function L(e, t, a, n, o, i) {
-  const r = f("MultiFlatmapVuer"), l = f("HelpModeDialog");
-  return c(), C("div", H, [
-    F(r, {
+}, E = { class: "viewer-container" };
+function O(e, t, a, n, o, i) {
+  const l = d("MultiFlatmapVuer"), s = d("HelpModeDialog");
+  return h(), R("div", E, [
+    H(l, {
       availableSpecies: e.availableSpecies,
       onFlatmapChanged: i.flatmapChanged,
       onReady: i.multiFlatmapReady,
       state: e.entry.state,
-      onResourceSelected: t[0] || (t[0] = (m) => i.flatmaprResourceSelected(e.entry.type, m)),
+      onResourceSelected: t[0] || (t[0] = (p) => i.flatmaprResourceSelected(e.entry.type, p)),
       style: { height: "100%", width: "100%" },
       initial: e.entry.resource,
       helpMode: e.helpMode,
@@ -299,6 +373,9 @@ function L(e, t, a, n, o, i) {
       onHelpModeLastItem: e.onHelpModeLastItem,
       onShownTooltip: e.onTooltipShown,
       onShownMapTooltip: e.onMapTooltipShown,
+      onAnnotationOpen: e.onAnnotationOpen,
+      onAnnotationClose: e.onAnnotationClose,
+      annotationSidebar: e.annotationSidebar,
       onConnectivityInfoOpen: e.onConnectivityInfoOpen,
       onConnectivityInfoClose: e.onConnectivityInfoClose,
       connectivityInfoSidebar: e.connectivityInfoSidebar,
@@ -314,18 +391,18 @@ function L(e, t, a, n, o, i) {
       onFinishHelpMode: e.endHelp,
       onPathwaySelectionChanged: i.onPathwaySelectionChanged,
       onOpenPubmedUrl: i.onOpenPubmedUrl
-    }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onConnectivityInfoOpen", "onConnectivityInfoClose", "connectivityInfoSidebar", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl"]),
-    e.helpMode && e.useHelpModeDialog ? (c(), k(l, {
+    }, null, 8, ["availableSpecies", "onFlatmapChanged", "onReady", "state", "initial", "helpMode", "helpModeActiveItem", "helpModeDialog", "onHelpModeLastItem", "onShownTooltip", "onShownMapTooltip", "onAnnotationOpen", "onAnnotationClose", "annotationSidebar", "onConnectivityInfoOpen", "onConnectivityInfoClose", "connectivityInfoSidebar", "showStarInLegend", "openMapOptions", "flatmapAPI", "sparcAPI", "onPanZoomCallback", "onOpenMap", "onFinishHelpMode", "onPathwaySelectionChanged", "onOpenPubmedUrl"]),
+    e.helpMode && e.useHelpModeDialog ? (h(), $(s, {
       key: 0,
       ref: "multiflatmapHelp",
       multiflatmapRef: e.multiflatmapRef,
       lastItem: e.helpModeLastItem,
       onShowNext: e.onHelpModeShowNext,
       onFinishHelpMode: e.onFinishHelpMode
-    }, null, 8, ["multiflatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : w("", !0)
+    }, null, 8, ["multiflatmapRef", "lastItem", "onShowNext", "onFinishHelpMode"])) : P("", !0)
   ]);
 }
-const D = /* @__PURE__ */ u(b, [["render", L], ["__scopeId", "data-v-2900d620"]]);
+const Z = /* @__PURE__ */ M(L, [["render", O], ["__scopeId", "data-v-9e95f83d"]]);
 export {
-  D as default
+  Z as default
 };

package/dist/Plot-BHrtko8L.js

@@ -0,0 +1,24 @@
+import { y as o } from "./plotvuer-DSwGHaaa.js";
+import { C as a } from "./ContentMixin-BTXCMWvE.js";
+import { resolveComponent as r, openBlock as n, createBlock as s } from "vue";
+import { _ as m } from "./index-D_VgD-w_.js";
+const p = {
+  name: "Plot",
+  mixins: [a],
+  components: {
+    PlotVuer: o
+  }
+};
+function l(e, c, u, d, i, f) {
+  const t = r("PlotVuer");
+  return n(), s(t, {
+    "data-source": e.entry.resource.dataSource,
+    metadata: e.entry.resource.metadata,
+    "supplemental-data": e.entry.resource.supplementalData,
+    style: { overflow: "hidden" }
+  }, null, 8, ["data-source", "metadata", "supplemental-data"]);
+}
+const C = /* @__PURE__ */ m(p, [["render", l]]);
+export {
+  C as default
+};