@abi-software/mapintegratedvuer 1.3.4-beta.1 → 1.3.4-beta.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/ContentMixin-e_R3pshi.js +584 -0
- package/dist/{Flatmap-BS0JbWf4.js → Flatmap-C5vT7xKS.js} +21 -16
- package/dist/{Iframe-BBXsetDo.js → Iframe-VUzwonAL.js} +2 -2
- package/dist/{MultiFlatmap-DbwZpIHe.js → MultiFlatmap-CmpC1OzB.js} +27 -19
- package/dist/{Plot-C-epDDs-.js → Plot-CmjKwdil.js} +2 -2
- package/dist/{Scaffold-BxKsRNwN.js → Scaffold-DCk59qIg.js} +7430 -7429
- package/dist/{Simulation-DKwIFKMK.js → Simulation-H03BonwT.js} +2 -2
- package/dist/{index-Ct_Hq2A5.js → index-fNKt5pKW.js} +7181 -6536
- package/dist/mapintegratedvuer.js +1 -1
- package/dist/mapintegratedvuer.umd.cjs +479 -479
- package/dist/{style-DWdSlu_q.js → style-DTVzdiHD.js} +2153 -2159
- package/dist/style.css +1 -1
- package/package.json +3 -3
- package/src/App.vue +4 -0
- package/src/components/MapContent.vue +10 -5
- package/src/components/viewers/Flatmap.vue +7 -2
- package/src/components/viewers/MultiFlatmap.vue +14 -3
- package/src/components/viewers/Scaffold.vue +12 -0
- package/src/mixins/ContentMixin.js +3 -27
- package/src/stores/index.js +1 -1
- package/src/stores/splitFlow.js +28 -0
- package/dist/ContentMixin-Cx9C1_Yu.js +0 -1218
@@ -1,1218 +0,0 @@
|
|
1
|
-
import { u as w, b as N, E as u, T as v } from "./index-Ct_Hq2A5.js";
|
2
|
-
import { mapStores as S } from "pinia";
|
3
|
-
const p = [
|
4
|
-
{
|
5
|
-
id: "ilxtr:neuron-type-keast-13",
|
6
|
-
centrelines: [
|
7
|
-
"n_71"
|
8
|
-
]
|
9
|
-
},
|
10
|
-
{
|
11
|
-
id: "ilxtr:neuron-type-keast-2",
|
12
|
-
centrelines: [
|
13
|
-
"bladder_n"
|
14
|
-
]
|
15
|
-
},
|
16
|
-
{
|
17
|
-
id: "ilxtr:neuron-type-keast-3",
|
18
|
-
centrelines: [
|
19
|
-
"bladder_n",
|
20
|
-
"hypogastric_n"
|
21
|
-
]
|
22
|
-
},
|
23
|
-
{
|
24
|
-
id: "ilxtr:neuron-type-keast-15",
|
25
|
-
centrelines: [
|
26
|
-
"n_73"
|
27
|
-
]
|
28
|
-
},
|
29
|
-
{
|
30
|
-
id: "ilxtr:neuron-type-keast-1",
|
31
|
-
centrelines: [
|
32
|
-
"bladder_n"
|
33
|
-
]
|
34
|
-
},
|
35
|
-
{
|
36
|
-
id: "ilxtr:neuron-type-keast-7",
|
37
|
-
centrelines: [
|
38
|
-
"L1_ventral_root_ramus",
|
39
|
-
"L1_spinal_n-1",
|
40
|
-
"lumbar_splanchnic_n",
|
41
|
-
"L2_spinal_n",
|
42
|
-
"L2_ventral_root_ramus"
|
43
|
-
]
|
44
|
-
},
|
45
|
-
{
|
46
|
-
id: "ilxtr:neuron-type-keast-9",
|
47
|
-
centrelines: [
|
48
|
-
"L6_spinal_n-1",
|
49
|
-
"L6_ventral_root",
|
50
|
-
"pudendal_n",
|
51
|
-
"L5_spinal_n",
|
52
|
-
"L5_ventral_root"
|
53
|
-
]
|
54
|
-
},
|
55
|
-
{
|
56
|
-
id: "ilxtr:neuron-type-keast-10",
|
57
|
-
centrelines: [
|
58
|
-
"S1_dorsal_root",
|
59
|
-
"S1_spinal_n-2",
|
60
|
-
"pelvic_splanchnic_n",
|
61
|
-
"L6_spinal_n-2",
|
62
|
-
"L6_dorsal_root",
|
63
|
-
"bladder_n"
|
64
|
-
]
|
65
|
-
},
|
66
|
-
{
|
67
|
-
id: "ilxtr:neuron-type-keast-11",
|
68
|
-
centrelines: [
|
69
|
-
"lumbar_splanchnic_n",
|
70
|
-
"L2_spinal_n",
|
71
|
-
"L1_spinal_n-1",
|
72
|
-
"hypogastric_n",
|
73
|
-
"bladder_n",
|
74
|
-
"L1_dorsal_root",
|
75
|
-
"L2_dorsal_root"
|
76
|
-
]
|
77
|
-
},
|
78
|
-
{
|
79
|
-
id: "ilxtr:neuron-type-keast-12",
|
80
|
-
centrelines: [
|
81
|
-
"L6_spinal_n-1",
|
82
|
-
"L6_dorsal_root",
|
83
|
-
"pudendal_n",
|
84
|
-
"S1_spinal_n-1",
|
85
|
-
"S1_dorsal_root"
|
86
|
-
]
|
87
|
-
},
|
88
|
-
{
|
89
|
-
id: "ilxtr:neuron-type-keast-8",
|
90
|
-
centrelines: [
|
91
|
-
"L1_ventral_root_paravertebral_ganglion",
|
92
|
-
"L1-L2_interganglionic_segment",
|
93
|
-
"sympathetic_trunk_T13-L1",
|
94
|
-
"L2_ventral_root_paravertebral_ganglion",
|
95
|
-
"sympathetic_trunk_L2-L3",
|
96
|
-
"sympathetic_trunk_L4-L5",
|
97
|
-
"sympathetic_trunk_L3-L4",
|
98
|
-
"sympathetic_trunk_L5-L6",
|
99
|
-
"sympathetic_trunk_T12-T13"
|
100
|
-
]
|
101
|
-
},
|
102
|
-
{
|
103
|
-
id: "ilxtr:neuron-type-keast-20",
|
104
|
-
centrelines: [
|
105
|
-
"T1_T2_cns",
|
106
|
-
"C8_T1_cns",
|
107
|
-
"T2_T3_cns",
|
108
|
-
"T10_T11_cns",
|
109
|
-
"T9_T10_cns",
|
110
|
-
"T11_T12_cns",
|
111
|
-
"T8_T9_cns",
|
112
|
-
"C7_C8_cns",
|
113
|
-
"C6_C7_cns",
|
114
|
-
"C4_C5_cns",
|
115
|
-
"C3_C4_cns",
|
116
|
-
"C5_C6_cns",
|
117
|
-
"medulla_C1_cns",
|
118
|
-
"pons_medulla_cns",
|
119
|
-
"C1_C2_cns",
|
120
|
-
"T5_T6_cns",
|
121
|
-
"T4_T5_cns",
|
122
|
-
"T6_T7_cns",
|
123
|
-
"L3_L4_cns",
|
124
|
-
"L2_L3_cns",
|
125
|
-
"L4_L5_cns",
|
126
|
-
"L5_L6_cns",
|
127
|
-
"T13_L1_cns",
|
128
|
-
"T12_T13_cns",
|
129
|
-
"L1_L2_cns",
|
130
|
-
"T3_T4_cns",
|
131
|
-
"n_69",
|
132
|
-
"C2_C3_cns",
|
133
|
-
"T7_T8_cns"
|
134
|
-
]
|
135
|
-
},
|
136
|
-
{
|
137
|
-
id: "ilxtr:neuron-type-keast-16",
|
138
|
-
centrelines: [
|
139
|
-
"n_74"
|
140
|
-
]
|
141
|
-
},
|
142
|
-
{
|
143
|
-
id: "ilxtr:neuron-type-keast-4",
|
144
|
-
centrelines: [
|
145
|
-
"sympathetic_trunk_L6-S1",
|
146
|
-
"L6_gray_ramus-spinal_n",
|
147
|
-
"sympathetic_trunk_L5-L6",
|
148
|
-
"S1_gray_ramus-spinal_n",
|
149
|
-
"S1_spinal_n-2",
|
150
|
-
"pelvic_splanchnic_n",
|
151
|
-
"L6_spinal_n-2",
|
152
|
-
"L1-L2_interganglionic_segment",
|
153
|
-
"sympathetic_trunk_T13-L1",
|
154
|
-
"sympathetic_trunk_L2-L3",
|
155
|
-
"bladder_n",
|
156
|
-
"sympathetic_trunk_L4-L5",
|
157
|
-
"sympathetic_trunk_L3-L4",
|
158
|
-
"sympathetic_trunk_T12-T13"
|
159
|
-
]
|
160
|
-
},
|
161
|
-
{
|
162
|
-
id: "ilxtr:neuron-type-keast-17",
|
163
|
-
centrelines: [
|
164
|
-
"n_75"
|
165
|
-
]
|
166
|
-
},
|
167
|
-
{
|
168
|
-
id: "ilxtr:neuron-type-keast-5",
|
169
|
-
centrelines: [
|
170
|
-
"S1_ventral_root",
|
171
|
-
"S1_spinal_n-2",
|
172
|
-
"pelvic_splanchnic_n",
|
173
|
-
"L6_spinal_n-2",
|
174
|
-
"L6_ventral_root"
|
175
|
-
]
|
176
|
-
},
|
177
|
-
{
|
178
|
-
id: "ilxtr:neuron-type-keast-18",
|
179
|
-
centrelines: [
|
180
|
-
"n_70"
|
181
|
-
]
|
182
|
-
},
|
183
|
-
{
|
184
|
-
id: "ilxtr:neuron-type-keast-6",
|
185
|
-
centrelines: [
|
186
|
-
"L1_ventral_root_ramus",
|
187
|
-
"L1_spinal_n-1",
|
188
|
-
"lumbar_splanchnic_n",
|
189
|
-
"L2_spinal_n",
|
190
|
-
"hypogastric_n",
|
191
|
-
"L2_ventral_root_ramus"
|
192
|
-
]
|
193
|
-
},
|
194
|
-
{
|
195
|
-
id: "ilxtr:neuron-type-keast-19",
|
196
|
-
centrelines: [
|
197
|
-
"n_69"
|
198
|
-
]
|
199
|
-
},
|
200
|
-
{
|
201
|
-
id: "ilxtr:neuron-type-keast-14",
|
202
|
-
centrelines: [
|
203
|
-
"n_72"
|
204
|
-
]
|
205
|
-
}
|
206
|
-
];
|
207
|
-
function f(e, a, n, i, s) {
|
208
|
-
let t = {};
|
209
|
-
if (t.dataset = n, t.scaffold = i, t.simulations = s, a ? t.title = a : t.title = e, t.description = "", t.actions = [], e)
|
210
|
-
switch (e) {
|
211
|
-
case "ICN":
|
212
|
-
t.title = "RNA", t.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.", t.actions = {
|
213
|
-
search: {
|
214
|
-
title: "Explore data",
|
215
|
-
resource: "icn",
|
216
|
-
type: "Search",
|
217
|
-
label: "ICN",
|
218
|
-
filter: {
|
219
|
-
facet: "genotype",
|
220
|
-
term: "heart"
|
221
|
-
}
|
222
|
-
},
|
223
|
-
plot: {
|
224
|
-
title: "View plot",
|
225
|
-
label: "ICN",
|
226
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
|
227
|
-
type: "Plot",
|
228
|
-
plotType: "heatmap",
|
229
|
-
datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
|
230
|
-
datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
|
231
|
-
datasetUrl: "https://discover.pennsieve.io/datasets/29",
|
232
|
-
datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
|
233
|
-
}
|
234
|
-
};
|
235
|
-
break;
|
236
|
-
}
|
237
|
-
else
|
238
|
-
t.actions = [];
|
239
|
-
return t;
|
240
|
-
}
|
241
|
-
function E(e, a, n, i, s) {
|
242
|
-
if (e || a) {
|
243
|
-
let t = {};
|
244
|
-
switch (e) {
|
245
|
-
case "UBERON:0001157":
|
246
|
-
t.title = "Colon", t.description = "", t.actions = {
|
247
|
-
search: {
|
248
|
-
title: "Explore data",
|
249
|
-
label: "Colon",
|
250
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
251
|
-
type: "Search",
|
252
|
-
filter: {
|
253
|
-
facet: "genotype",
|
254
|
-
term: "colon"
|
255
|
-
}
|
256
|
-
},
|
257
|
-
scaffold: {
|
258
|
-
title: "View 3D scaffold",
|
259
|
-
label: "Colon",
|
260
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/human/humanColon_metadata.json",
|
261
|
-
type: "Scaffold"
|
262
|
-
}
|
263
|
-
};
|
264
|
-
break;
|
265
|
-
case "UBERON:0000948":
|
266
|
-
case "UBERON:0002080":
|
267
|
-
t.title = "Heart", t.description = "", t.actions = {
|
268
|
-
search: {
|
269
|
-
title: "Explore data",
|
270
|
-
label: "Heart",
|
271
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
272
|
-
type: "Search",
|
273
|
-
filter: {
|
274
|
-
facet: "genotype",
|
275
|
-
term: "heart"
|
276
|
-
}
|
277
|
-
},
|
278
|
-
scaffold: {
|
279
|
-
title: "View 3D scaffold",
|
280
|
-
label: "Heart",
|
281
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/human/humanHeart_metadata.json",
|
282
|
-
type: "Scaffold"
|
283
|
-
}
|
284
|
-
};
|
285
|
-
break;
|
286
|
-
case "UBERON:0002048":
|
287
|
-
t.title = "Lung", t.description = "", t.actions = {
|
288
|
-
search: {
|
289
|
-
title: "Explore data",
|
290
|
-
label: "Lung",
|
291
|
-
resource: "https://sparc.science/data?type=dataset&q=lung",
|
292
|
-
type: "Search"
|
293
|
-
},
|
294
|
-
scaffold: {
|
295
|
-
title: "View 3D scaffold",
|
296
|
-
label: "Lung",
|
297
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/human/humanLeftLung_metadata.json",
|
298
|
-
type: "Scaffold"
|
299
|
-
}
|
300
|
-
};
|
301
|
-
break;
|
302
|
-
default:
|
303
|
-
t = f(e, a, n, i, s);
|
304
|
-
break;
|
305
|
-
}
|
306
|
-
return t;
|
307
|
-
}
|
308
|
-
}
|
309
|
-
function b(e, a, n, i, s) {
|
310
|
-
if (e || a) {
|
311
|
-
let t = {};
|
312
|
-
switch (e) {
|
313
|
-
case "UBERON:0000948":
|
314
|
-
case "UBERON:0002080":
|
315
|
-
s ? t = f(e, a, n, i, s) : (t.title = "Heart", t.description = "", t.actions = {
|
316
|
-
search: {
|
317
|
-
title: "Explore data",
|
318
|
-
label: "Heart",
|
319
|
-
resource: "https://sparc.science/data?type=dataset&q=heart",
|
320
|
-
type: "Search",
|
321
|
-
filter: {
|
322
|
-
facet: "genotype",
|
323
|
-
term: "heart"
|
324
|
-
}
|
325
|
-
},
|
326
|
-
scaffold: {
|
327
|
-
title: "View 3D scaffold",
|
328
|
-
label: "Heart",
|
329
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/rat/ratHeart_metadata.json",
|
330
|
-
type: "Scaffold"
|
331
|
-
},
|
332
|
-
simulation: {
|
333
|
-
title: "Explore simulations",
|
334
|
-
label: "Heart",
|
335
|
-
resource: "https://sparc.science/data?type=simulation&q=heart",
|
336
|
-
type: "URL"
|
337
|
-
}
|
338
|
-
});
|
339
|
-
break;
|
340
|
-
case "UBERON:0001156":
|
341
|
-
t.title = "Colon", t.description = "", t.actions = {
|
342
|
-
search: {
|
343
|
-
title: "Explore data",
|
344
|
-
label: "Colon",
|
345
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
346
|
-
type: "Search"
|
347
|
-
}
|
348
|
-
};
|
349
|
-
break;
|
350
|
-
case "UBERON:0002108":
|
351
|
-
t.title = "Small intestines", t.description = "", t.actions = {
|
352
|
-
search: {
|
353
|
-
title: "Explore data",
|
354
|
-
label: "Colon",
|
355
|
-
resource: "https://sparc.science/data?type=dataset&q=small+intestines",
|
356
|
-
type: "Search"
|
357
|
-
}
|
358
|
-
};
|
359
|
-
break;
|
360
|
-
case "UBERON:0001255":
|
361
|
-
t.title = "Urinary bladder", t.description = "", t.actions = {
|
362
|
-
search: {
|
363
|
-
title: "Explore data",
|
364
|
-
label: "Urinary Bladder",
|
365
|
-
resource: "https://sparc.science/data?type=dataset&q=bladder",
|
366
|
-
type: "Search"
|
367
|
-
},
|
368
|
-
scaffold: {
|
369
|
-
title: "View 3D scaffold",
|
370
|
-
label: "Bladder",
|
371
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Bladder/rat/ratBladder_metadata.json",
|
372
|
-
type: "Scaffold"
|
373
|
-
}
|
374
|
-
};
|
375
|
-
break;
|
376
|
-
case "UBERON:0002048":
|
377
|
-
t.title = "Lung", t.description = "", t.actions = {
|
378
|
-
search: {
|
379
|
-
title: "Explore data",
|
380
|
-
label: "Lung",
|
381
|
-
resource: "https://sparc.science/data?type=dataset&q=lung",
|
382
|
-
type: "Search"
|
383
|
-
}
|
384
|
-
};
|
385
|
-
break;
|
386
|
-
case "ICN":
|
387
|
-
t.title = "RNA", t.description = "The distribution of neurons in the intrinsic cardiac nervous system (ICN) were mapped and visualized in a 3D reconstruction of a male rat heart.", t.actions = {
|
388
|
-
search: {
|
389
|
-
title: "Explore data",
|
390
|
-
resource: "icn",
|
391
|
-
type: "Search"
|
392
|
-
},
|
393
|
-
plot: {
|
394
|
-
title: "View plot",
|
395
|
-
label: "ICN",
|
396
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/ISAN/csv-data/use-case-4/RNA_Seq.csv",
|
397
|
-
type: "Plot",
|
398
|
-
plotType: "heatmap",
|
399
|
-
datasetTitle: "Molecular Phenotype Distribution of Single Rat Intracardiac Neurons",
|
400
|
-
datasetDescription: "Images collected from serial cryostat sectioning of a cryopreserved heart was used to reconstruct the 3D context. Transcriptional profiles taken from isolated single neurons and mapped back into the previously generated 3D context.",
|
401
|
-
datasetUrl: "https://discover.pennsieve.io/datasets/29",
|
402
|
-
datasetImage: "https://assets.discover.pennsieve.io/dataset-assets/29/6/revisions/1/banner.jpg"
|
403
|
-
}
|
404
|
-
};
|
405
|
-
break;
|
406
|
-
case "UBERON:0000945":
|
407
|
-
case "UBERON:0001160":
|
408
|
-
case "UBERON:0001161":
|
409
|
-
t.title = "Stomach", t.description = "", t.actions = {
|
410
|
-
search: {
|
411
|
-
title: "Explore data",
|
412
|
-
label: "Stomach",
|
413
|
-
resource: "https://sparc.science/data?type=dataset&q=stomach",
|
414
|
-
type: "Search"
|
415
|
-
},
|
416
|
-
scaffold: {
|
417
|
-
title: "View 3D scaffold",
|
418
|
-
label: "Stomach",
|
419
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Stomach/rat/ratStomach_metadata.json",
|
420
|
-
type: "Scaffold"
|
421
|
-
}
|
422
|
-
};
|
423
|
-
break;
|
424
|
-
case "UBERON:0001759":
|
425
|
-
a ? t.title = a : t.title = "Vagus nerve", t.actions = {
|
426
|
-
search: {
|
427
|
-
title: "Explore data",
|
428
|
-
label: "Vagus nerve",
|
429
|
-
resource: "https://sparc.science/data?type=dataset&q=vagus+nerve",
|
430
|
-
type: "Search"
|
431
|
-
},
|
432
|
-
simulation: {
|
433
|
-
title: "Explore simulations",
|
434
|
-
label: "Vagus nerve",
|
435
|
-
resource: "https://sparc.science/data?type=simulation&q=vagus%20nerve",
|
436
|
-
type: "simulation"
|
437
|
-
}
|
438
|
-
};
|
439
|
-
break;
|
440
|
-
default:
|
441
|
-
t = f(e, a, n, i, s);
|
442
|
-
break;
|
443
|
-
}
|
444
|
-
return t;
|
445
|
-
}
|
446
|
-
}
|
447
|
-
function R(e, a, n, i, s) {
|
448
|
-
if (e || a) {
|
449
|
-
let t = {};
|
450
|
-
switch (e) {
|
451
|
-
case "UBERON:0001156":
|
452
|
-
t.title = "Colon", t.description = "", t.actions = {
|
453
|
-
search: {
|
454
|
-
title: "Explore data",
|
455
|
-
label: "Colon",
|
456
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
457
|
-
type: "Search"
|
458
|
-
},
|
459
|
-
scaffold: {
|
460
|
-
title: "View 3D scaffold",
|
461
|
-
label: "Colon",
|
462
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/mouse/mouseColon_metadata.json",
|
463
|
-
type: "Scaffold"
|
464
|
-
}
|
465
|
-
};
|
466
|
-
break;
|
467
|
-
case "UBERON:0002048":
|
468
|
-
t.title = "Lung", t.description = "", t.actions = {
|
469
|
-
search: {
|
470
|
-
title: "Explore data",
|
471
|
-
label: "Lung",
|
472
|
-
resource: "https://sparc.science/data?type=dataset&q=lung",
|
473
|
-
type: "Search"
|
474
|
-
},
|
475
|
-
scaffold: {
|
476
|
-
title: "View 3D scaffold",
|
477
|
-
label: "Lung",
|
478
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Lungs/mouse/mouseLeftLung_metadata.json",
|
479
|
-
type: "Scaffold"
|
480
|
-
}
|
481
|
-
};
|
482
|
-
break;
|
483
|
-
case "UBERON:0002108":
|
484
|
-
t.title = "Small intestines", t.description = "", t.actions = {
|
485
|
-
search: {
|
486
|
-
title: "Explore data",
|
487
|
-
label: "Colon",
|
488
|
-
resource: "https://sparc.science/data?type=dataset&q=small+intestines",
|
489
|
-
type: "Search"
|
490
|
-
}
|
491
|
-
};
|
492
|
-
break;
|
493
|
-
default:
|
494
|
-
t = f(e, a, n, i, s);
|
495
|
-
break;
|
496
|
-
}
|
497
|
-
return t;
|
498
|
-
}
|
499
|
-
}
|
500
|
-
function k(e, a, n, i, s) {
|
501
|
-
if (e || a) {
|
502
|
-
let t = {};
|
503
|
-
switch (e) {
|
504
|
-
case "UBERON:0008972":
|
505
|
-
t.title = "Colon", t.description = "", t.actions = {
|
506
|
-
search: {
|
507
|
-
title: "Explore data",
|
508
|
-
label: "Colon",
|
509
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
510
|
-
type: "Search"
|
511
|
-
},
|
512
|
-
scaffold: {
|
513
|
-
title: "View 3D scaffold",
|
514
|
-
label: "Colon",
|
515
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Colon/pig/pigColon_metadata.json",
|
516
|
-
type: "Scaffold"
|
517
|
-
}
|
518
|
-
};
|
519
|
-
break;
|
520
|
-
case "UBERON:0002108":
|
521
|
-
t.title = "Small intestines", t.description = "", t.actions = {
|
522
|
-
search: {
|
523
|
-
title: "Explore data",
|
524
|
-
label: "Colon",
|
525
|
-
resource: "https://sparc.science/data?type=dataset&q=small+intestines",
|
526
|
-
type: "Search"
|
527
|
-
}
|
528
|
-
};
|
529
|
-
break;
|
530
|
-
case "UBERON:0000948":
|
531
|
-
case "UBERON:0002080":
|
532
|
-
t.title = "Heart", t.description = "", t.actions = {
|
533
|
-
search: {
|
534
|
-
title: "Explore data",
|
535
|
-
label: "Heart",
|
536
|
-
resource: "https://sparc.science/data?type=dataset&q=colon",
|
537
|
-
type: "Search",
|
538
|
-
filter: {
|
539
|
-
facet: "genotype",
|
540
|
-
term: "heart"
|
541
|
-
}
|
542
|
-
},
|
543
|
-
scaffold: {
|
544
|
-
title: "View 3D scaffold",
|
545
|
-
label: "Heart",
|
546
|
-
resource: "https://mapcore-bucket1.s3-us-west-2.amazonaws.com/Generic+Scaffold/Heart/pig/pigHeart_metadata.json",
|
547
|
-
type: "Scaffold"
|
548
|
-
}
|
549
|
-
};
|
550
|
-
break;
|
551
|
-
default:
|
552
|
-
t = f(e, a, n, i, s);
|
553
|
-
break;
|
554
|
-
}
|
555
|
-
return t;
|
556
|
-
}
|
557
|
-
}
|
558
|
-
function B(e, a, n, i, s, t) {
|
559
|
-
switch (a) {
|
560
|
-
case "NCBITaxon:9606":
|
561
|
-
return E(e, n, i, s, t);
|
562
|
-
case "NCBITaxon:9823":
|
563
|
-
return k(e, n, i, s, t);
|
564
|
-
case "NCBITaxon:10090":
|
565
|
-
return R(e, n, i, s, t);
|
566
|
-
case "NCBITaxon:10114":
|
567
|
-
return b(e, n, i, s, t);
|
568
|
-
default:
|
569
|
-
return f(e, a, n, i, s);
|
570
|
-
}
|
571
|
-
}
|
572
|
-
function L() {
|
573
|
-
return [
|
574
|
-
{ id: "UBERON:0000948", name: "Heart", type: "simulation" },
|
575
|
-
{ id: "UBERON:0001156", name: "Colon", type: "simulation" },
|
576
|
-
{ id: "UBERON:0001255", name: "Bladder", type: "simulation" },
|
577
|
-
{ id: "UBERON:0000945", name: "Stomach", type: "simulation" },
|
578
|
-
{ id: "UBERON:0001759", name: "Vagus nerve", type: "simulation" },
|
579
|
-
{ id: "UBERON:0002108", name: "Small intestines", type: "simulation" },
|
580
|
-
{ id: "UBERON:0002107", name: "Liver", type: "simulation" }
|
581
|
-
];
|
582
|
-
}
|
583
|
-
function A() {
|
584
|
-
return L();
|
585
|
-
}
|
586
|
-
function _(e) {
|
587
|
-
if (e)
|
588
|
-
for (let a = 0; a < p.length; a++) {
|
589
|
-
if (p[a].id == e)
|
590
|
-
return p[a].centrelines;
|
591
|
-
if (p[a].centrelines.find((i) => i === e))
|
592
|
-
return [p[a].id];
|
593
|
-
}
|
594
|
-
return [];
|
595
|
-
}
|
596
|
-
function U(e) {
|
597
|
-
if (e) {
|
598
|
-
const a = e.toLowerCase();
|
599
|
-
if (a.includes("heart"))
|
600
|
-
return { id: "UBERON:0000948", name: "Heart" };
|
601
|
-
if (a.includes("liver"))
|
602
|
-
return { id: "UBERON:0002107", name: "Liver" };
|
603
|
-
if (a.includes("stomach"))
|
604
|
-
return { id: "UBERON:0000945", name: "Stomach" };
|
605
|
-
if (a.includes("colon"))
|
606
|
-
return { id: "UBERON:0001156", name: "Colon" };
|
607
|
-
if (a.includes("bladder"))
|
608
|
-
return { id: "UBERON:0001255", name: "Bladder" };
|
609
|
-
}
|
610
|
-
}
|
611
|
-
function O(e, a) {
|
612
|
-
if (e && e.resource) {
|
613
|
-
let n = e.resource;
|
614
|
-
Array.isArray(n) && n[0] && (n = n[0]);
|
615
|
-
let i, s, t, o, l, c = n.taxonomy;
|
616
|
-
if (n.data && n.data.id ? (i = n.data.id, s = n.data.id) : n.feature && (i = n.feature.models, s = n.feature.label, t = n.feature.dataset, o = n.feature.scaffold, l = n.feature.simulations), i || s) {
|
617
|
-
let d = B(i, c, s, t, o, l);
|
618
|
-
if (d && d.actions)
|
619
|
-
return d.actions[a];
|
620
|
-
}
|
621
|
-
}
|
622
|
-
}
|
623
|
-
let m = 7, r = 5;
|
624
|
-
const T = [
|
625
|
-
{
|
626
|
-
id: "UBERON:0000948",
|
627
|
-
name: "heart",
|
628
|
-
showAtZoom: 1
|
629
|
-
},
|
630
|
-
{
|
631
|
-
id: "UBERON:0001759",
|
632
|
-
name: "vagus nerve",
|
633
|
-
showAtZoom: 1
|
634
|
-
},
|
635
|
-
{
|
636
|
-
id: "UBERON:0001155",
|
637
|
-
name: "colon",
|
638
|
-
showAtZoom: 1
|
639
|
-
},
|
640
|
-
{
|
641
|
-
id: "UBERON:0000945",
|
642
|
-
name: "stomach",
|
643
|
-
showAtZoom: 1
|
644
|
-
},
|
645
|
-
{
|
646
|
-
id: "UBERON:0001013",
|
647
|
-
name: "adipose tissue",
|
648
|
-
showAtZoom: 1
|
649
|
-
},
|
650
|
-
{
|
651
|
-
id: "UBERON:0001255",
|
652
|
-
name: "urinary bladder",
|
653
|
-
showAtZoom: 1
|
654
|
-
},
|
655
|
-
{
|
656
|
-
id: "UBERON:0001348",
|
657
|
-
name: "brown adipose tissue",
|
658
|
-
showAtZoom: 6
|
659
|
-
},
|
660
|
-
{
|
661
|
-
id: "UBERON:0002008",
|
662
|
-
name: "cardiac nerve plexus",
|
663
|
-
showAtZoom: 1
|
664
|
-
},
|
665
|
-
{
|
666
|
-
id: "UBERON:0002240",
|
667
|
-
name: "spinal cord",
|
668
|
-
showAtZoom: 1
|
669
|
-
},
|
670
|
-
{
|
671
|
-
id: "UBERON:0002005",
|
672
|
-
name: "Enteric Nervous System",
|
673
|
-
showAtZoom: 4
|
674
|
-
},
|
675
|
-
{
|
676
|
-
id: "UBERON:0013702",
|
677
|
-
name: "body proper",
|
678
|
-
showAtZoom: 1
|
679
|
-
},
|
680
|
-
{
|
681
|
-
id: "UBERON:0002298",
|
682
|
-
name: "brainstem",
|
683
|
-
showAtZoom: 1
|
684
|
-
},
|
685
|
-
{
|
686
|
-
id: "UBERON:0002439",
|
687
|
-
name: "myenteric nerve plexus",
|
688
|
-
showAtZoom: 6
|
689
|
-
},
|
690
|
-
{
|
691
|
-
id: "UBERON:0000010",
|
692
|
-
name: "peripheral nervous system",
|
693
|
-
showAtZoom: 6
|
694
|
-
},
|
695
|
-
{
|
696
|
-
id: "UBERON:0002048",
|
697
|
-
name: "lung",
|
698
|
-
showAtZoom: 1
|
699
|
-
},
|
700
|
-
{
|
701
|
-
id: "UBERON:0002410",
|
702
|
-
name: "autonomic nervous system",
|
703
|
-
showAtZoom: 6
|
704
|
-
},
|
705
|
-
{
|
706
|
-
id: "UBERON:0002441",
|
707
|
-
name: "cervicothoracic ganglion",
|
708
|
-
showAtZoom: 6
|
709
|
-
},
|
710
|
-
{
|
711
|
-
id: "UBERON:0005363",
|
712
|
-
name: "inferior vagus X ganglion",
|
713
|
-
showAtZoom: 6
|
714
|
-
},
|
715
|
-
{
|
716
|
-
id: "UBERON:0001264",
|
717
|
-
name: "pancreas",
|
718
|
-
showAtZoom: 1
|
719
|
-
},
|
720
|
-
{
|
721
|
-
id: "UBERON:0001884",
|
722
|
-
name: "phrenic nerve",
|
723
|
-
showAtZoom: 6
|
724
|
-
},
|
725
|
-
{
|
726
|
-
id: "UBERON:0002059",
|
727
|
-
name: "submandibular ganglion",
|
728
|
-
showAtZoom: 7
|
729
|
-
},
|
730
|
-
{
|
731
|
-
id: "UBERON:0001347",
|
732
|
-
name: "white adipose tissue",
|
733
|
-
showAtZoom: 6
|
734
|
-
},
|
735
|
-
{
|
736
|
-
id: "UBERON:0001556",
|
737
|
-
name: "lower urinary tract",
|
738
|
-
showAtZoom: 1
|
739
|
-
},
|
740
|
-
{
|
741
|
-
id: "UBERON:0002262",
|
742
|
-
name: "celiac ganglion",
|
743
|
-
showAtZoom: 5
|
744
|
-
},
|
745
|
-
{
|
746
|
-
id: "UBERON:0000955",
|
747
|
-
name: "Brain",
|
748
|
-
showAtZoom: 1
|
749
|
-
},
|
750
|
-
{
|
751
|
-
id: "UBERON:0000160",
|
752
|
-
name: "intestine",
|
753
|
-
showAtZoom: 1
|
754
|
-
},
|
755
|
-
{
|
756
|
-
id: "UBERON:0001322",
|
757
|
-
name: "sciatic nerve",
|
758
|
-
showAtZoom: 1
|
759
|
-
},
|
760
|
-
{
|
761
|
-
id: "UBERON:0001649",
|
762
|
-
name: "glossopharyngeal nerve",
|
763
|
-
showAtZoom: 6
|
764
|
-
},
|
765
|
-
{
|
766
|
-
id: "UBERON:0002063",
|
767
|
-
name: "sinus venosus",
|
768
|
-
showAtZoom: 6
|
769
|
-
},
|
770
|
-
{
|
771
|
-
id: "UBERON:0002107",
|
772
|
-
name: "liver",
|
773
|
-
showAtZoom: 1
|
774
|
-
},
|
775
|
-
{
|
776
|
-
id: "UBERON:0002113",
|
777
|
-
name: "kidney",
|
778
|
-
showAtZoom: 1
|
779
|
-
},
|
780
|
-
{
|
781
|
-
id: "UBERON:0002481",
|
782
|
-
name: "bone tissue",
|
783
|
-
showAtZoom: 1
|
784
|
-
},
|
785
|
-
{
|
786
|
-
id: "UBERON:0004907",
|
787
|
-
name: "lower digestive tract",
|
788
|
-
showAtZoom: 4
|
789
|
-
},
|
790
|
-
{
|
791
|
-
id: "UBERON:0000044",
|
792
|
-
name: "Dorsal root ganglion",
|
793
|
-
showAtZoom: 5
|
794
|
-
},
|
795
|
-
// New levels from Keeran
|
796
|
-
{
|
797
|
-
id: "UBERON:0001736",
|
798
|
-
name: "Submandibular gland",
|
799
|
-
showAtZoom: m,
|
800
|
-
keyword: !0
|
801
|
-
},
|
802
|
-
{
|
803
|
-
id: "UBERON:0001103",
|
804
|
-
name: "Diaphragm",
|
805
|
-
showAtZoom: r,
|
806
|
-
keyword: !0
|
807
|
-
},
|
808
|
-
{
|
809
|
-
id: "UBERON:0001160",
|
810
|
-
name: "Fundus of stomach",
|
811
|
-
showAtZoom: r,
|
812
|
-
keyword: !0
|
813
|
-
},
|
814
|
-
{
|
815
|
-
id: "UBERON:0000955",
|
816
|
-
name: "Brain",
|
817
|
-
showAtZoom: r,
|
818
|
-
keyword: !0
|
819
|
-
},
|
820
|
-
{
|
821
|
-
id: "UBERON:0003708",
|
822
|
-
name: "Carotid sinus",
|
823
|
-
showAtZoom: m,
|
824
|
-
keyword: !0
|
825
|
-
},
|
826
|
-
{
|
827
|
-
id: "UBERON:0002079",
|
828
|
-
name: "Left cardiac atrium",
|
829
|
-
showAtZoom: r,
|
830
|
-
keyword: !0
|
831
|
-
},
|
832
|
-
{
|
833
|
-
id: "ILX:0485722",
|
834
|
-
name: "Nodose ganglion",
|
835
|
-
showAtZoom: m,
|
836
|
-
keyword: !0
|
837
|
-
},
|
838
|
-
{
|
839
|
-
id: "UBERON:0002078",
|
840
|
-
name: "Right cardiac atrium",
|
841
|
-
showAtZoom: r,
|
842
|
-
keyword: !0
|
843
|
-
},
|
844
|
-
{
|
845
|
-
id: "UBERON:0002084",
|
846
|
-
name: "Heart left ventricle",
|
847
|
-
showAtZoom: r,
|
848
|
-
keyword: !0
|
849
|
-
},
|
850
|
-
{
|
851
|
-
id: "UBERON:0002080",
|
852
|
-
name: "Heart right ventricle",
|
853
|
-
showAtZoom: r,
|
854
|
-
keyword: !0
|
855
|
-
},
|
856
|
-
{
|
857
|
-
id: "UBERON:0001508",
|
858
|
-
name: "Arch of Aorta",
|
859
|
-
showAtZoom: r,
|
860
|
-
keyword: !0
|
861
|
-
},
|
862
|
-
{
|
863
|
-
id: "UBERON:0001738",
|
864
|
-
name: "Thyroid cartilage",
|
865
|
-
showAtZoom: r,
|
866
|
-
keyword: !0
|
867
|
-
},
|
868
|
-
{
|
869
|
-
id: "UBERON:0000388",
|
870
|
-
name: "Epiglottis",
|
871
|
-
showAtZoom: r,
|
872
|
-
keyword: !0
|
873
|
-
}
|
874
|
-
];
|
875
|
-
function C(e) {
|
876
|
-
return e[0].toUpperCase() + e.substring(1);
|
877
|
-
}
|
878
|
-
const Z = {
|
879
|
-
emits: ["flatmap-provenance-ready", "resource-selected", "species-changed"],
|
880
|
-
props: {
|
881
|
-
/**
|
882
|
-
* Object containing information for
|
883
|
-
* the required viewing.
|
884
|
-
*/
|
885
|
-
entry: Object,
|
886
|
-
visible: {
|
887
|
-
type: Boolean,
|
888
|
-
default: !0
|
889
|
-
},
|
890
|
-
mouseHovered: {
|
891
|
-
type: Boolean,
|
892
|
-
default: !1
|
893
|
-
}
|
894
|
-
},
|
895
|
-
computed: {
|
896
|
-
...S(w, N),
|
897
|
-
syncMode() {
|
898
|
-
return this.splitFlowStore.syncMode;
|
899
|
-
},
|
900
|
-
useHelpModeDialog() {
|
901
|
-
return this.settingsStore.useHelpModeDialog;
|
902
|
-
},
|
903
|
-
connectivityInfoSidebar() {
|
904
|
-
return this.settingsStore.connectivityInfoSidebar;
|
905
|
-
}
|
906
|
-
},
|
907
|
-
mounted: function() {
|
908
|
-
u.on("startHelp", () => {
|
909
|
-
this.startHelp();
|
910
|
-
}), this.multiflatmapRef = this.$refs.multiflatmap, this.flatmapRef = this.$refs.flatmap, this.scaffoldRef = this.$refs.scaffold;
|
911
|
-
},
|
912
|
-
methods: {
|
913
|
-
toggleSyncMode: function() {
|
914
|
-
},
|
915
|
-
getState: function() {
|
916
|
-
},
|
917
|
-
openMap: function(e) {
|
918
|
-
e === "SYNC" ? (this.toggleSyncMode(), this.trackOpenMap("toggle_map_sync_mode")) : (u.emit("OpenNewMap", e), this.trackOpenMap(`open_new_${e}_map`)), this.onConnectivityInfoClose();
|
919
|
-
},
|
920
|
-
trackOpenMap: function(e) {
|
921
|
-
v.sendEvent({
|
922
|
-
event: "interaction_event",
|
923
|
-
event_name: "portal_maps_open_map",
|
924
|
-
category: e,
|
925
|
-
location: "open_new_map"
|
926
|
-
});
|
927
|
-
},
|
928
|
-
updateWithViewUrl: function() {
|
929
|
-
},
|
930
|
-
/**
|
931
|
-
* Perform a local search on this contentvuer
|
932
|
-
*/
|
933
|
-
search: function() {
|
934
|
-
return !1;
|
935
|
-
},
|
936
|
-
/**
|
937
|
-
* Get a list of search suggestions on this contentvuer
|
938
|
-
*/
|
939
|
-
searchSuggestions: function() {
|
940
|
-
},
|
941
|
-
/**
|
942
|
-
* Callback when the vuers emit a selected event.
|
943
|
-
*/
|
944
|
-
resourceSelected: function(e, a, n) {
|
945
|
-
var l, c, d;
|
946
|
-
if (this.resourceHasAction(a)) {
|
947
|
-
u.emit("PopoverActionClick", a);
|
948
|
-
return;
|
949
|
-
}
|
950
|
-
let i, s = "none", t = !1;
|
951
|
-
const o = {
|
952
|
-
paneIndex: this.entry.id,
|
953
|
-
type: e,
|
954
|
-
resource: a,
|
955
|
-
internalName: void 0,
|
956
|
-
eventType: void 0
|
957
|
-
};
|
958
|
-
if (e == "MultiFlatmap" || e == "Flatmap")
|
959
|
-
if (o.internalName = this.idNamePair[a.feature.models], a.eventType == "click")
|
960
|
-
if (o.eventType = "selected", a.feature.type == "marker") {
|
961
|
-
let y = this.idNamePair[a.feature.models], g = T.filter(
|
962
|
-
(h) => h.id === a.feature.models
|
963
|
-
);
|
964
|
-
this.settingsStore.isFeaturedMarkerIdentifier(
|
965
|
-
a.feature.id
|
966
|
-
) ? i = {
|
967
|
-
type: "Search",
|
968
|
-
term: this.settingsStore.featuredMarkerDoi(
|
969
|
-
a.feature.id
|
970
|
-
),
|
971
|
-
featuredDataset: !0
|
972
|
-
} : g.filter((h) => h.keyword).length > 0 ? i = {
|
973
|
-
type: "Search",
|
974
|
-
term: "http://purl.obolibrary.org/obo/" + a.feature.models.replace(":", "_")
|
975
|
-
} : i = {
|
976
|
-
type: "Facet",
|
977
|
-
facet: y,
|
978
|
-
facetPropPath: "anatomy.organ.category.name",
|
979
|
-
term: "Anatomical structure"
|
980
|
-
}, t = !0, e == "MultiFlatmap" && this.$refs.multiflatmap.getCurrentFlatmap().mapImp.clearSearchResults();
|
981
|
-
} else
|
982
|
-
a.feature.type == "feature" && (this.syncMode ? t = !0 : s = "scaffold");
|
983
|
-
else
|
984
|
-
a.eventType == "mouseenter" && (o.eventType = "highlighted", t = !0);
|
985
|
-
else
|
986
|
-
e == "Scaffold" && (a && a[0] && ((((l = a[0].data) == null ? void 0 : l.id) === void 0 || ((c = a[0].data) == null ? void 0 : c.id) === "") && (a[0].data.id = (d = a[0].data) == null ? void 0 : d.group), o.internalName = a[0].data.id, a[0].data.lastActionOnMarker === !0 && (i = {
|
987
|
-
type: "Facet",
|
988
|
-
facet: C(a[0].data.id),
|
989
|
-
facetPropPath: "anatomy.organ.category.name",
|
990
|
-
term: "Anatomical structure"
|
991
|
-
})), o.eventType = "selected", t = !0, s = "search");
|
992
|
-
i === void 0 && n && (i = O(o, s)), i && u.emit("PopoverActionClick", i), t && this.$emit("resource-selected", o);
|
993
|
-
},
|
994
|
-
resourceHasAction: function(e) {
|
995
|
-
return e.type === "URL" || e.type === "Search" || e.type === "Neuron Search" || e.type == "Facet" || e.type == "Facets";
|
996
|
-
},
|
997
|
-
/**
|
998
|
-
* Check if this viewer is currently visible
|
999
|
-
*/
|
1000
|
-
isVisible: function() {
|
1001
|
-
return this.splitFlowStore.getPaneNameById(this.entry.id) !== void 0;
|
1002
|
-
},
|
1003
|
-
displayTooltip: function() {
|
1004
|
-
},
|
1005
|
-
/**
|
1006
|
-
* Get the term to zoom/highlight in a synchronisation event,
|
1007
|
-
* if it cannot be found in the map, it will perform several
|
1008
|
-
* calls to try to ge a valid name/id.
|
1009
|
-
*/
|
1010
|
-
getNameAndIdFromSyncData: async function(e) {
|
1011
|
-
let a = e.internalName;
|
1012
|
-
a === void 0 && e.resource && (a = e.resource.label);
|
1013
|
-
let n;
|
1014
|
-
if (e.resource && e.resource.resource && (n = e.resource.resource[0]), this.entry.type === "Scaffold") {
|
1015
|
-
if (this.$refs.scaffold.findObjectsWithGroupName(a).length === 0) {
|
1016
|
-
if (e.resource && e.resource.feature) {
|
1017
|
-
const t = _(e.resource.feature.models);
|
1018
|
-
if (t.length > 0)
|
1019
|
-
return t;
|
1020
|
-
}
|
1021
|
-
let s = U(a);
|
1022
|
-
if (s)
|
1023
|
-
return s;
|
1024
|
-
if (n && e.eventType === "selected")
|
1025
|
-
return fetch(`${this.apiLocation}get-related-terms/${n}`).then((t) => t.json()).then((t) => {
|
1026
|
-
if (t.uberon.array.length > 0)
|
1027
|
-
return a = t.uberon.array[0].name.charAt(0).toUpperCase() + t.uberon.array[0].name.slice(1), n = t.uberon.array[0].id.toUpperCase(), { id: n, name: a };
|
1028
|
-
});
|
1029
|
-
}
|
1030
|
-
} else if (this.entry.type === "MultiFlatmap")
|
1031
|
-
if (a === "Bladder")
|
1032
|
-
a = "Urinary Bladder";
|
1033
|
-
else {
|
1034
|
-
const i = _(a);
|
1035
|
-
i.length > 0 && (a = i[0]);
|
1036
|
-
}
|
1037
|
-
return { id: n, name: a };
|
1038
|
-
},
|
1039
|
-
// Get the species and andaotmy info for the featured datasets
|
1040
|
-
getDatasetAnatomyInfo: function(e) {
|
1041
|
-
fetch(`${this.apiLocation}dataset_info/anatomy?identifier=${e}`).then((a) => a.json()).then((a) => {
|
1042
|
-
const n = a.result[0];
|
1043
|
-
let i;
|
1044
|
-
try {
|
1045
|
-
i = n.anatomy.organ[0].curie;
|
1046
|
-
} catch {
|
1047
|
-
i = void 0;
|
1048
|
-
}
|
1049
|
-
let s;
|
1050
|
-
try {
|
1051
|
-
s = n.item.curie;
|
1052
|
-
} catch {
|
1053
|
-
s = void 0;
|
1054
|
-
}
|
1055
|
-
let t;
|
1056
|
-
try {
|
1057
|
-
let o = 0, l = !1;
|
1058
|
-
for (; !l && o < n.organisms.subject.length; ) {
|
1059
|
-
const c = n.organisms.subject[o];
|
1060
|
-
c.species && (t = c.species.name, l = !0), o += 1;
|
1061
|
-
}
|
1062
|
-
} catch {
|
1063
|
-
t = void 0;
|
1064
|
-
}
|
1065
|
-
this.settingsStore.updateFeaturedMarker({
|
1066
|
-
identifier: e,
|
1067
|
-
marker: i,
|
1068
|
-
doi: s,
|
1069
|
-
species: t
|
1070
|
-
});
|
1071
|
-
});
|
1072
|
-
},
|
1073
|
-
// Check if the old featured dataset api has any info
|
1074
|
-
oldFeaturedDatasetApiHasInfo: async function() {
|
1075
|
-
let a = await (await fetch(`${this.apiLocation}get_featured_datasets_identifiers`)).json();
|
1076
|
-
return !a.identifiers || a.identifiers.length == 0 ? !1 : a.identifiers;
|
1077
|
-
},
|
1078
|
-
// Check if the new featured dataset api has any info
|
1079
|
-
newFeaturedDatasetApiHasInfo: async function() {
|
1080
|
-
let a = await (await fetch(`${this.apiLocation}get_featured_dataset`)).json();
|
1081
|
-
return !a.datasets || a.datasets.length == 0 ? !1 : a.datasets.map((n) => n.id);
|
1082
|
-
},
|
1083
|
-
/**
|
1084
|
-
* Get a list of featured datasets to display.
|
1085
|
-
*/
|
1086
|
-
getFeaturedDatasets: async function() {
|
1087
|
-
let e = [], a = await this.oldFeaturedDatasetApiHasInfo();
|
1088
|
-
if (a)
|
1089
|
-
e = a;
|
1090
|
-
else {
|
1091
|
-
let n = await this.newFeaturedDatasetApiHasInfo();
|
1092
|
-
n && (e = n);
|
1093
|
-
}
|
1094
|
-
this.settingsStore.updateFeatured(e), e.forEach((n) => {
|
1095
|
-
this.getDatasetAnatomyInfo(n);
|
1096
|
-
});
|
1097
|
-
},
|
1098
|
-
zoomToFeatures: function() {
|
1099
|
-
},
|
1100
|
-
handleSyncMouseEvent: async function(e) {
|
1101
|
-
let a = await this.getNameAndIdFromSyncData(e);
|
1102
|
-
e.eventType === "highlighted" ? this.highlightFeatures(a) : e.eventType === "selected" && this.displayTooltip(a);
|
1103
|
-
},
|
1104
|
-
/**
|
1105
|
-
* Handle sync pan zoom event
|
1106
|
-
*/
|
1107
|
-
handleSyncPanZoomEvent: function() {
|
1108
|
-
},
|
1109
|
-
highlightFeatures: function() {
|
1110
|
-
},
|
1111
|
-
receiveSynchronisedEvent: async function(e) {
|
1112
|
-
if (e.paneIndex !== this.entry.id)
|
1113
|
-
e.eventType == "panZoom" || this.handleSyncMouseEvent(e);
|
1114
|
-
else if (e.eventType == "selected") {
|
1115
|
-
let a = await this.getNameAndIdFromSyncData(e);
|
1116
|
-
this.zoomToFeatures(a, !1);
|
1117
|
-
}
|
1118
|
-
},
|
1119
|
-
requestSynchronisedEvent: function() {
|
1120
|
-
},
|
1121
|
-
getAvailableTerms: function() {
|
1122
|
-
let e = A();
|
1123
|
-
for (let a = 0; a < e.length; a++)
|
1124
|
-
this.idNamePair[e[a].id] = e[a].name;
|
1125
|
-
if (this.apiLocation) {
|
1126
|
-
this._controller && this._controller.abort(), this._controller = new AbortController();
|
1127
|
-
let a = this._controller.signal;
|
1128
|
-
fetch(`${this.apiLocation}get-organ-curies`, {
|
1129
|
-
signal: a
|
1130
|
-
}).then((n) => n.json()).then((n) => {
|
1131
|
-
this._controller = void 0, n.uberon.array.forEach((i) => {
|
1132
|
-
this.idNamePair[i.id.toUpperCase()] = i.name.charAt(0).toUpperCase() + i.name.slice(1);
|
1133
|
-
});
|
1134
|
-
});
|
1135
|
-
}
|
1136
|
-
},
|
1137
|
-
flatmapMarkerUpdate() {
|
1138
|
-
},
|
1139
|
-
onResize: function() {
|
1140
|
-
},
|
1141
|
-
startHelp: function() {
|
1142
|
-
this.isInHelp === !1 && (this.helpMode = !0, window.addEventListener("mousedown", this.checkEndHelpMouseDown), this.isInHelp = !0);
|
1143
|
-
},
|
1144
|
-
endHelp: function() {
|
1145
|
-
window.removeEventListener("mousedown", this.checkEndHelpMouseDown), this.helpMode = !1, setTimeout(() => {
|
1146
|
-
this.isInHelp = !1;
|
1147
|
-
}, 200);
|
1148
|
-
},
|
1149
|
-
onHelpModeShowNext: function() {
|
1150
|
-
this.helpModeActiveItem += 1;
|
1151
|
-
},
|
1152
|
-
onHelpModeLastItem: function(e) {
|
1153
|
-
e && (this.helpModeLastItem = !0);
|
1154
|
-
},
|
1155
|
-
onFinishHelpMode: function() {
|
1156
|
-
this.helpMode = !1, this.helpModeActiveItem = 0, this.helpModeLastItem = !1;
|
1157
|
-
},
|
1158
|
-
onTooltipShown: function() {
|
1159
|
-
this.$refs.multiflatmap && this.$refs.multiflatmapHelp && this.$refs.multiflatmapHelp.toggleTooltipHighlight(), this.$refs.flatmap && this.$refs.flatmapHelp && this.$refs.flatmapHelp.toggleTooltipHighlight(), this.$refs.scaffold && this.$refs.scaffoldHelp && this.$refs.scaffoldHelp.toggleTooltipHighlight();
|
1160
|
-
},
|
1161
|
-
onMapTooltipShown: function() {
|
1162
|
-
this.$refs.multiflatmap && this.$refs.multiflatmapHelp && this.$refs.multiflatmapHelp.toggleTooltipPinHighlight(), this.$refs.flatmap && this.$refs.flatmapHelp && this.$refs.flatmapHelp.toggleTooltipPinHighlight(), this.$refs.scaffold && this.$refs.scaffoldHelp && this.$refs.scaffoldHelp.toggleTooltipPinHighlight();
|
1163
|
-
},
|
1164
|
-
/**
|
1165
|
-
* End help-mode only if user clicks outside of help mode dialog.
|
1166
|
-
*/
|
1167
|
-
checkEndHelpMouseDown: function(e) {
|
1168
|
-
e.target.closest(".help-mode-dialog") || this.endHelp();
|
1169
|
-
},
|
1170
|
-
mapHoverHighlight: function(e) {
|
1171
|
-
if (this.visible) {
|
1172
|
-
const a = this.settingsStore.hoverAnatomies, n = this.settingsStore.hoverOrgans;
|
1173
|
-
a.length || n.length ? (clearTimeout(this.hoverDelay), this.multiflatmapRef || this.flatmapRef ? e == null || e.zoomToFeatures(a, { noZoomIn: !0 }) : this.scaffoldRef && (e == null || e.changeHighlightedByName(n, "", !1))) : this.hoverDelay = setTimeout(() => {
|
1174
|
-
this.multiflatmapRef || this.flatmapRef ? e == null || e.clearSearchResults() : this.scaffoldRef && (e == null || e.changeHighlightedByName(n, "", !1));
|
1175
|
-
}, 500);
|
1176
|
-
}
|
1177
|
-
},
|
1178
|
-
onConnectivityInfoOpen: function(e) {
|
1179
|
-
u.emit("connectivity-info-open", e);
|
1180
|
-
},
|
1181
|
-
onConnectivityInfoClose: function() {
|
1182
|
-
u.emit("connectivity-info-close");
|
1183
|
-
}
|
1184
|
-
},
|
1185
|
-
data: function() {
|
1186
|
-
return {
|
1187
|
-
apiLocation: void 0,
|
1188
|
-
activeSpecies: "Rat",
|
1189
|
-
scaffoldCamera: void 0,
|
1190
|
-
mainStyle: {
|
1191
|
-
height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
|
1192
|
-
width: "100%",
|
1193
|
-
bottom: "0px"
|
1194
|
-
},
|
1195
|
-
helpMode: !1,
|
1196
|
-
helpModeActiveItem: 0,
|
1197
|
-
helpModeLastItem: !1,
|
1198
|
-
multiflatmapRef: null,
|
1199
|
-
flatmapRef: null,
|
1200
|
-
scaffoldRef: null,
|
1201
|
-
idNamePair: {},
|
1202
|
-
scaffoldLoaded: !1,
|
1203
|
-
isInHelp: !1,
|
1204
|
-
hoverDelay: void 0
|
1205
|
-
};
|
1206
|
-
},
|
1207
|
-
created: function() {
|
1208
|
-
this.flatmapAPI = void 0, this.apiLocation = void 0, this.settingsStore.flatmapAPI && (this.flatmapAPI = this.settingsStore.flatmapAPI), this.settingsStore.sparcApi && (this.apiLocation = this.settingsStore.sparcApi);
|
1209
|
-
},
|
1210
|
-
watch: {
|
1211
|
-
helpMode: function(e) {
|
1212
|
-
e || (this.helpModeActiveItem = 0);
|
1213
|
-
}
|
1214
|
-
}
|
1215
|
-
};
|
1216
|
-
export {
|
1217
|
-
Z as C
|
1218
|
-
};
|