@abi-software/mapintegratedvuer 1.22.0 → 1.24.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{ConnectivityGraph-BBZ3Dgat.js → ConnectivityGraph-CCxk8vcE.js} +6 -6
- package/dist/{ContentMixin-B-O_IwPg.js → ContentMixin-Db8nqZax.js} +303 -247
- package/dist/{DynamicMarkerMixin-B9iqtP_f.js → DynamicMarkerMixin-LB2RYdSY.js} +1 -1
- package/dist/{Flatmap-BoEFI50b.js → Flatmap-CqUzOkdl.js} +5 -5
- package/dist/{Iframe-Slj-LQTF.js → Iframe-I-xdZ2FP.js} +2 -2
- package/dist/{MultiFlatmap-l6aBn6x3.js → MultiFlatmap-11L97ycJ.js} +6 -6
- package/dist/{Plot-CIhEip5b.js → Plot-Bd9RqyVD.js} +2 -2
- package/dist/{Scaffold-D5ZGCDvt.js → Scaffold-CySWXQxI.js} +46 -36
- package/dist/Simulation-ChUbGudZ.js +32 -0
- package/dist/{connectivities-Br3MpoAv.js → connectivities-LtlFwLOp.js} +6399 -5790
- package/dist/es-D-YkSGXX.js +436 -0
- package/dist/mapintegratedvuer.js +13061 -11664
- package/dist/mapintegratedvuer.umd.cjs +191 -190
- package/dist/style.css +1 -1
- package/package.json +7 -7
- package/src/assets/header-icon.scss +9 -3
- package/src/components/ContentBar.vue +172 -92
- package/src/components/ContentVuer.vue +41 -1
- package/src/components/ContextCard.vue +15 -3
- package/src/components/DatasetHeader.vue +4 -1
- package/src/components/DialogToolbarContent.vue +45 -4
- package/src/components/EventBus.js +8 -0
- package/src/components/MapContent.vue +85 -31
- package/src/components/ResizeSensor.vue +7 -9
- package/src/components/ScreenshotPopover.vue +526 -0
- package/src/components/SplitDialog.vue +94 -93
- package/src/components/SplitFlow.vue +158 -96
- package/src/components/scripts/utilities.js +56 -1
- package/src/components/viewers/Flatmap.vue +1 -0
- package/src/components/viewers/MultiFlatmap.vue +3 -0
- package/src/components/viewers/Scaffold.vue +25 -13
- package/src/components/viewers/Simulation.vue +23 -1
- package/src/components.d.ts +2 -0
- package/src/mixins/ContentMixin.js +23 -10
- package/src/services/screenshot.js +1186 -0
- package/src/stores/connectivities.js +38 -5
- package/src/stores/settings.js +18 -0
- package/vite.config.js +27 -4
- package/dist/Simulation-C5o5DXRb.js +0 -25
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import {
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import { markRaw as
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import { mapStores as
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import { A as e, D as t, I as n, U as r, b as i, i as a, m as o, n as s, p as c, r as l, s as u, t as d, u as f, y as p } from "./connectivities-LtlFwLOp.js";
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import { markRaw as m } from "vue";
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import { mapStores as h } from "pinia";
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//#region node_modules/@abi-software/flatmapvuer/src/services/flatmapQueries.js
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var
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var g = function(e) {
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if (!e) return [];
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let t = /* @__PURE__ */ new Set();
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return e.filter((e) => {
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let n = JSON.stringify(e);
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return !t.has(n) && (t.add(n), !0);
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});
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}, _ = function(e) {
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return new Set((e || []).map((e) => JSON.stringify(e)));
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}, v = function(e) {
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let t = /* @__PURE__ */ new Set(), n = [];
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return e.forEach((e) => {
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let { id: r, name: i } = e, a = `${r.toLowerCase()}:${i.toLowerCase()}`;
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t.has(a) || (t.add(a), n.push(e));
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},
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}, y = /* @__PURE__ */ new Map(), b = /* @__PURE__ */ new Map(), x = 100, S = /* @__PURE__ */ new Map(), C = function(e, t) {
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if (S.has(e)) {
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let t = S.get(e);
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return S.delete(e), S.set(e, t), t;
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}
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let n = t().catch((t) => {
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throw S.get(e) === n && S.delete(e), t;
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});
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return S.set(e, n), S.size > x && S.delete(S.keys().next().value), n;
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}, w = async function(e, t) {
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let n = [...new Set(t)], r = n.filter((e) => !y.has(e) && !b.has(e));
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if (r.length) {
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let t = e.queryLabels(r).then((e) => {
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(e || []).forEach((e) => {
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let { entity: t, label: n } = e;
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n === "Mammalia" && (n = "Mammalia not otherwise specified"), y.set(t, n);
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});
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}).finally(() => {
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r.forEach((e) => b.delete(e));
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});
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r.forEach((e) => b.set(e, t));
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}
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let i = new Set(n.map((e) => b.get(e)).filter(Boolean));
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return await Promise.all(i), n.filter((e) => y.has(e)).map((e) => ({
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taxon: e,
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label: y.get(e)
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}));
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}, T = (e, t) => {
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let n = e.name ?? e, r = t.name ?? t, i = n.toUpperCase(), a = r.toUpperCase();
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return i < a ? -1 : +(i > a);
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},
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}, E = function() {
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return {
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destinations: [],
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origins: [],
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components: [],
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destinationsWithDatasets: [],
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originsWithDatasets: [],
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componentsWithDatasets: [],
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destinationsCombinations: [],
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originsCombinations: [],
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componentsCombinations: [],
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singleConnectivityList: [],
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rawURLs: [],
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expertConsultants: []
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};
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}, D = function(e, t, n, r) {
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let { sckanNodeId: i, sckanNodeLabel: a, mapNodeId: o, mapNodeLabel: s } = n;
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e.push({
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sckanId: i,
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sckanLabel: a,
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mapId: o,
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mapLabel: s
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}), o.forEach((e, n) => {
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let i = typeof e == "string" ? e : e[0];
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i && t.push({
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id: i,
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name: r[n]
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});
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});
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}, O = function() {
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this.initialise = function(e) {
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this.flatmapAPI = e,
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}, this.
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let n;
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n = t.feature.hyperlinks && t.feature.hyperlinks.length > 0 ? t.feature.hyperlinks : this.rawURLs;
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this.flatmapAPI = e, Object.assign(this, E()), this.hasSingleConnectivityList = !1, this.controller = void 0, this.uberons = [], this.lookUp = [], this.connectivitySource = "map", this.noMapConnectivity = !1, this._requestId = 0;
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}, this._buildTooltipData = async function(e, t, n) {
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r = n.feature?.hyperlinks && n.feature.hyperlinks.length > 0 ? n.feature.hyperlinks : e.rawURLs;
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let i;
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if (n.provenanceTaxonomy) {
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i = [];
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try {
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let { label: t } = e;
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r.push(t);
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(await w(t, n.provenanceTaxonomy)).forEach((e) => {
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i.push(e.label);
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});
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} catch (e) {
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}
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return {
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destinations:
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origins:
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components:
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destinationsWithDatasets:
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originsWithDatasets:
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componentsWithDatasets:
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destinationsCombinations:
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originsCombinations:
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componentsCombinations:
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hasSingleConnectivityList:
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title:
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featureId:
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hyperlinks:
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destinations: e.destinations,
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origins: e.origins,
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components: e.components,
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destinationsWithDatasets: v(e.destinationsWithDatasets),
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originsWithDatasets: v(e.originsWithDatasets),
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componentsWithDatasets: v(e.componentsWithDatasets),
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destinationsCombinations: e.destinationsCombinations,
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originsCombinations: e.originsCombinations,
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componentsCombinations: e.componentsCombinations,
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hasSingleConnectivityList: e.singleConnectivityList.length > 0,
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title: n.label,
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featureId: n.resource,
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hyperlinks: r,
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"expert-consultants": e.expertConsultants,
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provenanceTaxonomy: n.provenanceTaxonomy,
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provenanceTaxonomyLabel: i,
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connectivitySource: e.connectivitySource,
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noMapConnectivity: e.noMapConnectivity
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};
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}, this.createTooltipData = async function(e, t) {
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return this._buildTooltipData(this, e, t);
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}, this.queryTooltipData = async function(e, t) {
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let n = t.resource, r = {
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...E(),
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connectivitySource: "map",
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noMapConnectivity: !1
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};
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if (n && n.length > 0 && n[0]) {
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let { state: t } = await this._fetchConnectivity(e, n[0], "map", !0);
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r = {
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...r,
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...t
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};
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}
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return this._buildTooltipData(r, e, t);
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return {
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...e,
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origins: this.origins,
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originsWithDatasets:
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originsWithDatasets: v(this.originsWithDatasets),
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components: this.components,
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componentsWithDatasets:
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componentsWithDatasets: v(this.componentsWithDatasets),
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destinations: this.destinations,
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destinationsWithDatasets:
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destinationsWithDatasets: v(this.destinationsWithDatasets),
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destinationsCombinations: this.destinationsCombinations,
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originsCombinations: this.originsCombinations,
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componentsCombinations: this.componentsCombinations,
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return e.forEach((e) => {
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n.push(this.createLabelFromNeuralNode(e[0]), t), e.length === 2 && n.push(this.createLabelFromNeuralNode(e[1]), t);
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}), n;
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}, this.
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let { taxon: t, label: r } = e;
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n[t] = r, this.uberons.push({
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}, this._buildLabelLookup = async function(e, t) {
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lookUp: n,
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uberons: r
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};
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}, this.createLabelLookup = async function(e, t) {
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}, this.buildConnectivitySqlStatement = function(e) {
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}, this.findAllIdsFromConnectivity = function(e) {
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});
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}, this.retrieveFlatmapKnowledgeForEvent = async function(e, t) {
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this.controller && this.controller.abort(), this.controller = new AbortController(), this._requestId++;
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if (Object.assign(this, E()), !(!n || n.length === 0 || !n[0])) return [await this.queryForConnectivityNew(e, n[0])];
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|
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|
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this.origins = r.map((t) => this.createLabelFromNeuralNode(t, e)).sort(v), this.components = o.map((t) => this.createLabelFromNeuralNode(t, e)).sort(v), this.destinations = i.map((t) => this.createLabelFromNeuralNode(t, e)).sort(v), this.flattenAndFindDatasets(r, o, i), n({
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|
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|
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|
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|
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|
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|
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|
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|
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|
|
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|
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|
|
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|
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|
|
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|
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|
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|
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|
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|
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|
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|
|
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|
+
};
|
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|
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if (i.length > 0) {
|
|
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|
+
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|
|
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|
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i.forEach((e) => {
|
|
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|
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|
|
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|
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r.has(t) && D(c.destinationsCombinations, c.destinationsWithDatasets, e, n), a.has(t) && D(c.originsCombinations, c.originsWithDatasets, e, n), o.has(t) && D(c.componentsCombinations, c.componentsWithDatasets, e, n);
|
|
259
275
|
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|
|
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|
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}
|
|
276
|
+
}
|
|
277
|
+
return c;
|
|
278
|
+
}, this.flattenAndFindDatasets = function(e, t, n) {
|
|
279
|
+
Object.assign(this, this._findDatasets(e, t, n, this.uberons, this.singleConnectivityList));
|
|
280
|
+
}, this._processConnectivity = async function(e, t, n) {
|
|
281
|
+
let r = [], i = [], a;
|
|
282
|
+
t && t["node-phenotypes"] ? (["ilxtr:hasSomaLocatedIn"].forEach((e) => {
|
|
283
|
+
e in t["node-phenotypes"] && r.push(...t["node-phenotypes"][e]);
|
|
284
|
+
}), r = g(r), ["ilxtr:hasAxonPresynapticElementIn", "ilxtr:hasAxonSensorySubcellularElementIn"].forEach((e) => {
|
|
285
|
+
e in t["node-phenotypes"] && i.push(...t["node-phenotypes"][e]);
|
|
286
|
+
}), i = g(i)) : (i = g(t.axons), t.somas && t.somas.length > 0 && r.push(...t.somas), t.dendrites && t.dendrites.length > 0 && r.push(...t.dendrites), r = g(r), a = t.somas);
|
|
287
|
+
let o = this.findComponents(t, i, r, a), s = this.findAllIdsFromConnectivity(t), { lookUp: c, uberons: l } = await this._buildLabelLookup(e, s), u = r.map((e) => this.createLabelFromNeuralNode(e, c)).sort(T), d = o.map((e) => this.createLabelFromNeuralNode(e, c)).sort(T), f = i.map((e) => this.createLabelFromNeuralNode(e, c)).sort(T);
|
|
288
|
+
return {
|
|
289
|
+
state: {
|
|
290
|
+
uberons: l,
|
|
291
|
+
origins: u,
|
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292
|
+
components: d,
|
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293
|
+
destinations: f,
|
|
294
|
+
...this._findDatasets(r, o, i, l, n)
|
|
295
|
+
},
|
|
296
|
+
value: {
|
|
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|
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ids: {
|
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|
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dendrites: r,
|
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299
|
+
components: o,
|
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|
+
axons: i
|
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|
+
},
|
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|
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labels: {
|
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|
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|
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|
+
components: d,
|
|
305
|
+
destinations: f
|
|
306
|
+
}
|
|
307
|
+
}
|
|
308
|
+
};
|
|
309
|
+
}, this.processConnectivity = async function(e, t) {
|
|
310
|
+
let { state: n, value: r } = await this._processConnectivity(e, t, this.singleConnectivityList);
|
|
311
|
+
return Object.assign(this, n), r;
|
|
261
312
|
}, this.buildPubmedSqlStatement = function(e) {
|
|
262
313
|
let t = "select distinct publication from publications where entity in (";
|
|
263
314
|
if (e.length === 1) t += `'${e[0]}')`;
|
|
@@ -279,7 +330,7 @@ var p = function(e) {
|
|
|
279
330
|
if ("error" in i) throw TypeError(i.error);
|
|
280
331
|
return i.values;
|
|
281
332
|
};
|
|
282
|
-
},
|
|
333
|
+
}, k = [
|
|
283
334
|
{
|
|
284
335
|
id: 0,
|
|
285
336
|
nerve_id: "ILX:0793723",
|
|
@@ -1164,9 +1215,9 @@ var p = function(e) {
|
|
|
1164
1215
|
"FMA subclasses (in human nerves)": ["FMA:6892", "FMA:6893"],
|
|
1165
1216
|
"subclass labels": ["Right T9 grey ramus communicans", "Left T9 grey ramus communicans"]
|
|
1166
1217
|
}
|
|
1167
|
-
],
|
|
1218
|
+
], A = () => {
|
|
1168
1219
|
let e = {};
|
|
1169
|
-
return
|
|
1220
|
+
return k.forEach((t) => {
|
|
1170
1221
|
let n = t.nerve_id, r = t.label.toLowerCase(), i = t["subclass labels"];
|
|
1171
1222
|
if (n && r !== "nerve") {
|
|
1172
1223
|
if (!i.length) return;
|
|
@@ -1178,13 +1229,13 @@ var p = function(e) {
|
|
|
1178
1229
|
};
|
|
1179
1230
|
}
|
|
1180
1231
|
}), e;
|
|
1181
|
-
},
|
|
1232
|
+
}, j = () => {
|
|
1182
1233
|
let e = [], t = {
|
|
1183
1234
|
key: "scaffold.connectivity.nerve",
|
|
1184
1235
|
label: "Nerves",
|
|
1185
1236
|
children: []
|
|
1186
1237
|
}, n = [];
|
|
1187
|
-
for (let e of
|
|
1238
|
+
for (let e of k) {
|
|
1188
1239
|
if (e.label === "nerve") continue;
|
|
1189
1240
|
let t = {
|
|
1190
1241
|
facetPropPath: "scaffold.connectivity.nerve",
|
|
@@ -1201,14 +1252,15 @@ var p = function(e) {
|
|
|
1201
1252
|
};
|
|
1202
1253
|
//#endregion
|
|
1203
1254
|
//#region src/mixins/ContentMixin.js
|
|
1204
|
-
function
|
|
1255
|
+
function M(e) {
|
|
1205
1256
|
return e[0].toUpperCase() + e.substring(1);
|
|
1206
1257
|
}
|
|
1207
|
-
var
|
|
1258
|
+
var N = {
|
|
1208
1259
|
emits: [
|
|
1209
1260
|
"flatmap-provenance-ready",
|
|
1210
1261
|
"resource-selected",
|
|
1211
|
-
"species-changed"
|
|
1262
|
+
"species-changed",
|
|
1263
|
+
"viewer-ready"
|
|
1212
1264
|
],
|
|
1213
1265
|
props: {
|
|
1214
1266
|
entry: Object,
|
|
@@ -1229,7 +1281,7 @@ var w = {
|
|
|
1229
1281
|
showIdInTooltip: { default: !0 }
|
|
1230
1282
|
},
|
|
1231
1283
|
computed: {
|
|
1232
|
-
...
|
|
1284
|
+
...h(l, n, s, d),
|
|
1233
1285
|
idNamePair() {
|
|
1234
1286
|
return this.splitFlowStore.idNamePair;
|
|
1235
1287
|
},
|
|
@@ -1247,10 +1299,10 @@ var w = {
|
|
|
1247
1299
|
}
|
|
1248
1300
|
},
|
|
1249
1301
|
beforeUnmount: function() {
|
|
1250
|
-
this.alive = !1;
|
|
1302
|
+
this.alive = !1, window.removeEventListener("mousedown", this.checkEndHelpMouseDown), clearTimeout(this.highlightDelay);
|
|
1251
1303
|
},
|
|
1252
1304
|
mounted: function() {
|
|
1253
|
-
this.$refs.multiflatmap && (this.multiflatmapRef =
|
|
1305
|
+
this.$refs.multiflatmap && (this.multiflatmapRef = m(this.$refs.multiflatmap)), this.$refs.flatmap && (this.flatmapRef = m(this.$refs.flatmap)), this.$refs.iframe && (this.iframeRef = m(this.$refs.iframe)), this.$refs.plot && (this.plotRef = m(this.$refs.plot)), this.$refs.simulation && (this.simulationRef = m(this.$refs.simulation)), (this.iframeRef || this.plotRef || this.simulationRef) && this.loadExplorerConfig(), this.connectivityKnowledge = this.connectivitiesStore.globalConnectivities, this.connectivityFilterOptions = this.connectivitiesStore.filterOptions, this.connectivityFilterSources = this.connectivitiesStore.filterSources;
|
|
1254
1306
|
},
|
|
1255
1307
|
methods: {
|
|
1256
1308
|
toggleMinimap: function(e, t) {
|
|
@@ -1276,14 +1328,18 @@ var w = {
|
|
|
1276
1328
|
}
|
|
1277
1329
|
},
|
|
1278
1330
|
getState: function() {},
|
|
1331
|
+
getScreenshotSources: async function(e) {
|
|
1332
|
+
let t = this.getFlatmapImp?.()?.map;
|
|
1333
|
+
return t ? [await r(t, e)] : [];
|
|
1334
|
+
},
|
|
1279
1335
|
openMap: function(e) {
|
|
1280
|
-
|
|
1336
|
+
i.emit("OpenNewMap", e), this.trackOpenMap(`open_new_${e}_map`);
|
|
1281
1337
|
},
|
|
1282
1338
|
onMapmanagerLoaded: function(e) {
|
|
1283
1339
|
this.settingsStore.updateMapManager(e);
|
|
1284
1340
|
},
|
|
1285
1341
|
trackOpenMap: function(e) {
|
|
1286
|
-
|
|
1342
|
+
p.sendEvent({
|
|
1287
1343
|
event: "interaction_event",
|
|
1288
1344
|
event_name: "portal_maps_open_map",
|
|
1289
1345
|
category: e,
|
|
@@ -1301,52 +1357,52 @@ var w = {
|
|
|
1301
1357
|
return !1;
|
|
1302
1358
|
},
|
|
1303
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|
searchSuggestions: function() {},
|
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-
resourceSelected: function(e,
|
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-
let
|
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1306
|
-
if (this.resourceHasAction(
|
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|
-
|
|
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|
+
resourceSelected: function(e, t) {
|
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+
let n = t[0];
|
|
1362
|
+
if (this.resourceHasAction(n)) {
|
|
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i.emit("PopoverActionClick", n);
|
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1364
|
return;
|
|
1309
1365
|
}
|
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1310
|
-
let
|
|
1366
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+
let r, a = !1, o = {
|
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1367
|
paneIndex: this.entry.id,
|
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|
type: e,
|
|
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|
-
resource:
|
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+
resource: t,
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|
internalName: void 0,
|
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|
eventType: void 0
|
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|
};
|
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|
if (e == "MultiFlatmap" || e == "Flatmap") {
|
|
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|
-
if (o.internalName =
|
|
1319
|
-
if (o.eventType = "selected",
|
|
1374
|
+
if (o.internalName = n?.feature?.label ? n.feature.label : this.idNamePair[n.feature.models], n.eventType == "click") {
|
|
1375
|
+
if (o.eventType = "selected", n.feature.type == "marker") {
|
|
1320
1376
|
let t = o.internalName;
|
|
1321
|
-
if (this.settingsStore.isFeaturedMarkerIdentifier(
|
|
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|
+
if (this.settingsStore.isFeaturedMarkerIdentifier(n.feature.id)) r = {
|
|
1322
1378
|
type: "Search",
|
|
1323
|
-
term: this.settingsStore.featuredMarkerDoi(
|
|
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|
+
term: this.settingsStore.featuredMarkerDoi(n.feature.id),
|
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1380
|
featuredDataset: !0
|
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1381
|
};
|
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|
else {
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-
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+
r = {
|
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|
type: "Facet",
|
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|
facets: [t]
|
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|
};
|
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1387
|
let e = /* @__PURE__ */ new Set();
|
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if (
|
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+
if (n.feature["dataset-terms"].forEach((t) => {
|
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|
e.add(t.label ? t.label : t.term);
|
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|
-
}), e.size === 0 && e.add(t),
|
|
1390
|
+
}), e.size === 0 && e.add(t), r.facets = [...e], this.settingsStore.hasAppliedFacets(e) && this.settingsStore.appliedFacets.length <= e.size) return;
|
|
1335
1391
|
if (this.settingsStore.appliedFacets.length) {
|
|
1336
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|
if (!this.settingsStore.hasAppliedFacets(e)) {
|
|
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|
let t = [.../* @__PURE__ */ new Set([...this.settingsStore.appliedFacets, ...e])];
|
|
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|
this.settingsStore.updateAppliedFacets(t);
|
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|
}
|
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1340
|
-
} else e.size > 1 && (
|
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+
} else e.size > 1 && (r.type = "Facets"), this.settingsStore.updateAppliedFacets(r.facets);
|
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|
}
|
|
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|
a = !0, e == "MultiFlatmap" && this.$refs.multiflatmap.getCurrentFlatmap().mapImp.clearSearchResults();
|
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|
}
|
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-
} else
|
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-
} else e == "Scaffold" && (
|
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1400
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+
} else n.eventType == "mouseenter" && (o.eventType = "highlighted", a = !0);
|
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+
} else e == "Scaffold" && (n && ((n.data?.id === void 0 || n.data?.id === "") && (n.data.id = n.data?.group), o.internalName = n.data.id, n.data.lastActionOnMarker === !0 && (r = {
|
|
1346
1402
|
type: "Facet",
|
|
1347
|
-
facets: [
|
|
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|
+
facets: [M(n.data.id)]
|
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1348
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|
})), o.eventType = "selected", a = !0);
|
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1349
|
-
|
|
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|
+
r && i.emit("PopoverActionClick", r), a && this.$emit("resource-selected", o);
|
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|
},
|
|
1351
1407
|
resourceHasAction: function(e) {
|
|
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|
return e && (e.type === "URL" || e.type === "Search" || e.type === "Neuron Search" || e.type == "Facet" || e.type == "Facets");
|
|
@@ -1399,7 +1455,7 @@ var w = {
|
|
|
1399
1455
|
t.forEach((e) => {
|
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1400
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|
let { models: t } = e.feature;
|
|
1401
1457
|
n.push(t);
|
|
1402
|
-
}),
|
|
1458
|
+
}), p.sendEvent({
|
|
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1459
|
event: "interaction_event",
|
|
1404
1460
|
event_name: "portal_maps_connectivity",
|
|
1405
1461
|
category: n.join(", "),
|
|
@@ -1480,40 +1536,40 @@ var w = {
|
|
|
1480
1536
|
}
|
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1481
1537
|
},
|
|
1482
1538
|
onAnnotationOpen: function(e) {
|
|
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|
-
|
|
1539
|
+
i.emit("annotation-open", e);
|
|
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1540
|
},
|
|
1485
1541
|
onAnnotationClose: function() {
|
|
1486
|
-
|
|
1542
|
+
i.emit("sidebar-annotation-close");
|
|
1487
1543
|
},
|
|
1488
1544
|
updateOfflineAnnotationEnabled: function(e) {
|
|
1489
|
-
|
|
1545
|
+
i.emit("update-offline-annotation-enabled", e);
|
|
1490
1546
|
},
|
|
1491
1547
|
onConnectivityInfoOpen: function(e) {
|
|
1492
|
-
|
|
1548
|
+
i.emit("connectivity-info-open", e);
|
|
1493
1549
|
},
|
|
1494
1550
|
onConnectivityError: function(e) {
|
|
1495
|
-
|
|
1551
|
+
i.emit("connectivity-error", e);
|
|
1496
1552
|
},
|
|
1497
1553
|
onConnectivityInfoClose: function() {
|
|
1498
|
-
|
|
1554
|
+
i.emit("connectivity-info-close");
|
|
1499
1555
|
},
|
|
1500
1556
|
onSidebarAnnotationClose: function() {},
|
|
1501
1557
|
onNeuronConnectionFeatureClick: function(e) {
|
|
1502
|
-
|
|
1558
|
+
i.emit("neuron-connection-feature-click", e);
|
|
1503
1559
|
},
|
|
1504
1560
|
showConnectivity: function() {},
|
|
1505
1561
|
showConnectivityTooltips: function() {},
|
|
1506
1562
|
setVisibilityFilter: function() {},
|
|
1507
1563
|
loadExplorerConfig: async function() {
|
|
1508
|
-
this.flatmapService = await this.mockUpFlatmapService(), this.loadConnectivityExplorerConfig(this.flatmapService);
|
|
1564
|
+
this.flatmapService = m(await this.mockUpFlatmapService()), this.loadConnectivityExplorerConfig(this.flatmapService);
|
|
1509
1565
|
},
|
|
1510
1566
|
mockUpFlatmapService: async function() {
|
|
1511
|
-
let
|
|
1512
|
-
this.flatmapQueries =
|
|
1567
|
+
let e = await o(this.flatmapAPI, "human-flatmap_male"), n = e.uuid, r = e.sckan["knowledge-source"], i = await c(this.flatmapAPI, n);
|
|
1568
|
+
this.flatmapQueries = m(new O()), this.flatmapQueries.initialise(this.flatmapAPI);
|
|
1513
1569
|
let a = {
|
|
1514
1570
|
mapMetadata: {
|
|
1515
1571
|
uuid: n,
|
|
1516
|
-
connectivity: { ...
|
|
1572
|
+
connectivity: { ...e.sckan }
|
|
1517
1573
|
},
|
|
1518
1574
|
pathways: i,
|
|
1519
1575
|
resource: this.entry.resource,
|
|
@@ -1533,42 +1589,42 @@ var w = {
|
|
|
1533
1589
|
}
|
|
1534
1590
|
return a;
|
|
1535
1591
|
}
|
|
1536
|
-
},
|
|
1592
|
+
}, s = j();
|
|
1537
1593
|
return {
|
|
1538
1594
|
mockup: !0,
|
|
1539
|
-
getFilterOptions: async (
|
|
1540
|
-
let r = await
|
|
1541
|
-
return [...
|
|
1595
|
+
getFilterOptions: async (e, n) => {
|
|
1596
|
+
let r = await t(this.flatmapAPI, e, n, void 0);
|
|
1597
|
+
return [...s, ...r];
|
|
1542
1598
|
},
|
|
1543
|
-
getTermNerveMaps:
|
|
1599
|
+
getTermNerveMaps: A,
|
|
1544
1600
|
mapImp: a
|
|
1545
1601
|
};
|
|
1546
1602
|
},
|
|
1547
1603
|
loadConnectivityExplorerConfig: async function(e) {
|
|
1548
|
-
let
|
|
1549
|
-
if (!this.connectivityKnowledge[
|
|
1550
|
-
this.flatmapQueries =
|
|
1551
|
-
let e = await
|
|
1552
|
-
this.connectivityKnowledge[
|
|
1604
|
+
let t = e.mapImp, n = a(t), r = e.mockup ? t.resource : t.uuid, o = [];
|
|
1605
|
+
if (!this.connectivityKnowledge[n]) {
|
|
1606
|
+
this.flatmapQueries = m(new O()), this.flatmapQueries.initialise(this.flatmapAPI);
|
|
1607
|
+
let e = await u(t, this.flatmapQueries);
|
|
1608
|
+
this.connectivityKnowledge[n] = e.filter((e) => e.connectivity?.length).sort((e, t) => e.label.localeCompare(t.label));
|
|
1553
1609
|
}
|
|
1554
|
-
if (!this.connectivityKnowledge[
|
|
1555
|
-
let e =
|
|
1556
|
-
this.connectivityKnowledge[
|
|
1610
|
+
if (!this.connectivityKnowledge[r]) {
|
|
1611
|
+
let e = t.pathways?.paths || {};
|
|
1612
|
+
this.connectivityKnowledge[r] = this.connectivityKnowledge[n].filter((t) => t.id in e);
|
|
1557
1613
|
}
|
|
1558
|
-
if (!this.connectivityFilterOptions[
|
|
1559
|
-
let
|
|
1560
|
-
this.connectivityKnowledge[
|
|
1561
|
-
let
|
|
1614
|
+
if (!this.connectivityFilterOptions[r] && !e.mockup && (this.connectivityFilterOptions[r] = await e.getFilterOptions(t, this.connectivityKnowledge[r])), e.mockup) {
|
|
1615
|
+
let n = e.getTermNerveMaps() || {}, i = JSON.parse(JSON.stringify(this.connectivityKnowledge[r]));
|
|
1616
|
+
this.connectivityKnowledge[r] = i.map((e) => {
|
|
1617
|
+
let t = e;
|
|
1562
1618
|
if (e.nerves?.length) {
|
|
1563
|
-
let r = e.nerves.flat(Infinity).reduce((e,
|
|
1564
|
-
r?.length && (
|
|
1619
|
+
let r = e.nerves.flat(Infinity).reduce((e, t) => (t in n && e.push(n[t]), e), []);
|
|
1620
|
+
r?.length && (o.push(...r), t["nerve-label"] = r.sort((e, t) => e.nerve.localeCompare(t.nerve)));
|
|
1565
1621
|
}
|
|
1566
|
-
return
|
|
1567
|
-
}).filter((e) => e["nerve-label"]), this.connectivityFilterOptions[
|
|
1568
|
-
let
|
|
1569
|
-
this.connectivityFilterOptions[
|
|
1622
|
+
return t;
|
|
1623
|
+
}).filter((e) => e["nerve-label"]), this.connectivityFilterOptions[r] || (this.connectivityFilterOptions[r] = await e.getFilterOptions(t, this.connectivityKnowledge[r])), o = o.map((e) => e.nerve.toLowerCase());
|
|
1624
|
+
let a = JSON.parse(JSON.stringify(this.connectivityFilterOptions[r]));
|
|
1625
|
+
this.connectivityFilterOptions[r] = a.map((e) => {
|
|
1570
1626
|
if (e.key === "scaffold.connectivity.nerve") {
|
|
1571
|
-
let t = e.children.filter((e) =>
|
|
1627
|
+
let t = e.children.filter((e) => o.includes(e.label.toLowerCase()));
|
|
1572
1628
|
return {
|
|
1573
1629
|
...e,
|
|
1574
1630
|
children: t
|
|
@@ -1576,8 +1632,8 @@ var w = {
|
|
|
1576
1632
|
}
|
|
1577
1633
|
return e;
|
|
1578
1634
|
});
|
|
1579
|
-
} else this.connectivityFilterSources[
|
|
1580
|
-
this.connectivitiesStore.updateFilterOptions(this.connectivityFilterOptions), this.connectivitiesStore.updateGlobalConnectivities(this.connectivityKnowledge),
|
|
1635
|
+
} else this.connectivityFilterSources[r] || (this.connectivityFilterSources[r] = e.getFilterSources()), this.connectivitiesStore.updateFilterSources(this.connectivityFilterSources);
|
|
1636
|
+
this.connectivitiesStore.updateFilterOptions(this.connectivityFilterOptions), this.connectivitiesStore.updateGlobalConnectivities(this.connectivityKnowledge), i.emit("species-layout-connectivity-update");
|
|
1581
1637
|
},
|
|
1582
1638
|
knowledgeTooltipQuery: async function(e) {
|
|
1583
1639
|
await this.flatmapQueries.retrieveFlatmapKnowledgeForEvent(this.flatmapService.mapImp, { resource: [e.id] });
|
|
@@ -1587,24 +1643,24 @@ var w = {
|
|
|
1587
1643
|
provenanceTaxonomy: e.taxons,
|
|
1588
1644
|
feature: []
|
|
1589
1645
|
});
|
|
1590
|
-
return t.knowledgeSource =
|
|
1646
|
+
return t.knowledgeSource = a(this.flatmapService.mapImp), t.mapId = this.flatmapService.mapImp.mapMetadata.id, t.mapuuid = this.flatmapService.mapImp.mapMetadata.uuid, t["nerve-label"] = e["nerve-label"], t.ready = !0, t;
|
|
1591
1647
|
},
|
|
1592
1648
|
getKnowledgeTooltip: async function(e) {
|
|
1593
1649
|
this.tooltipEntry = [], e.data.forEach((e) => this.tooltipEntry.push({
|
|
1594
1650
|
title: e.label,
|
|
1595
1651
|
featureId: [e.id],
|
|
1596
1652
|
ready: !1
|
|
1597
|
-
})),
|
|
1598
|
-
let
|
|
1599
|
-
for (let
|
|
1600
|
-
this.tooltipEntry = await Promise.all(
|
|
1653
|
+
})), i.emit("connectivity-info-open", this.tooltipEntry);
|
|
1654
|
+
let t = [];
|
|
1655
|
+
for (let n = 0; n < e.data.length; n++) t.push(await this.knowledgeTooltipQuery(e.data[n]));
|
|
1656
|
+
this.tooltipEntry = await Promise.all(t), this.tooltipEntry.map((e) => e.featureId[0]).length > 0 && i.emit("connectivity-info-open", this.tooltipEntry);
|
|
1601
1657
|
},
|
|
1602
|
-
changeConnectivitySource: async function(e,
|
|
1603
|
-
let { entry:
|
|
1604
|
-
|
|
1658
|
+
changeConnectivitySource: async function(e, t) {
|
|
1659
|
+
let { entry: n, connectivitySource: r } = e, a = this?.flatmapService?.mapImp?.mapMetadata.uuid;
|
|
1660
|
+
t.includes(a) || (t.push(a), await this.flatmapQueries.queryForConnectivityNew(this.flatmapService.mapImp, n.featureId[0], r), this.tooltipEntry = this.tooltipEntry.map((e) => e.featureId[0] === n.featureId[0] ? this.flatmapQueries.updateTooltipData(e) : e), i.emit("connectivity-info-open", this.tooltipEntry));
|
|
1605
1661
|
},
|
|
1606
1662
|
trackEvent: function(e) {
|
|
1607
|
-
|
|
1663
|
+
p.sendEvent(e);
|
|
1608
1664
|
},
|
|
1609
1665
|
tooltipPathLabelProvider: function(e) {
|
|
1610
1666
|
if (!(this.showLongLabel?.value ?? this.showLongLabel)) return null;
|
|
@@ -1620,7 +1676,7 @@ var w = {
|
|
|
1620
1676
|
], s = [...this.showIdInTooltip ? a : [], ...r ? o : []].join(";");
|
|
1621
1677
|
if (e && e["long-label"]) {
|
|
1622
1678
|
let r = [];
|
|
1623
|
-
r.push(`<div style="${s}">${
|
|
1679
|
+
r.push(`<div style="${s}">${M(e["long-label"])}</div>`), this.showIdInTooltip && r.push(`<span class="id-tag">${t}</span>`), n.push(r.join(""));
|
|
1624
1680
|
}
|
|
1625
1681
|
}
|
|
1626
1682
|
}
|
|
@@ -1630,7 +1686,7 @@ var w = {
|
|
|
1630
1686
|
data: function() {
|
|
1631
1687
|
return {
|
|
1632
1688
|
apiLocation: void 0,
|
|
1633
|
-
activeSpecies:
|
|
1689
|
+
activeSpecies: f,
|
|
1634
1690
|
scaffoldCamera: void 0,
|
|
1635
1691
|
mainStyle: {
|
|
1636
1692
|
height: this.entry.datasetTitle ? "calc(100% - 30px)" : "100%",
|
|
@@ -1667,4 +1723,4 @@ var w = {
|
|
|
1667
1723
|
} }
|
|
1668
1724
|
};
|
|
1669
1725
|
//#endregion
|
|
1670
|
-
export {
|
|
1726
|
+
export { N as t };
|