@abi-software/mapintegratedvuer 1.21.1 → 1.21.2

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Files changed (68) hide show
  1. package/README.md +23 -5
  2. package/assets/location-icon.html +33 -1
  3. package/assets/styleguide.css +18 -18
  4. package/cypress.config.js +7 -9
  5. package/dist/{ConnectivityGraph-CZMROk9r.js → ConnectivityGraph-DrSaFEDd.js} +3 -3
  6. package/dist/{ContentMixin-Vn34n5t2.js → ContentMixin-Xg0PjBqG.js} +2 -2
  7. package/dist/{DynamicMarkerMixin-BS6t7w_i.js → DynamicMarkerMixin-D5Ruu_hd.js} +1 -1
  8. package/dist/{Flatmap-BejxA0uz.js → Flatmap-CxN8TbnS.js} +4 -4
  9. package/dist/{Iframe-BWbhTjCR.js → Iframe-CkgbLfJt.js} +4 -4
  10. package/dist/{MultiFlatmap-nlmsH-Ib.js → MultiFlatmap-CkejvAJe.js} +4 -4
  11. package/dist/{Plot-ChbPsDZX.js → Plot-BfwoipSl.js} +2 -2
  12. package/dist/{Scaffold-C6f7c7Ha.js → Scaffold-DCqsTKpg.js} +4 -4
  13. package/dist/{Simulation-DcJScRYo.js → Simulation-BOtU3kTT.js} +2 -2
  14. package/dist/{connectivities-UXTqf7_0.js → connectivities-DyeS8w0c.js} +126 -95
  15. package/dist/index.html +9 -6
  16. package/dist/mapintegratedvuer.js +5489 -5578
  17. package/dist/mapintegratedvuer.umd.cjs +196 -196
  18. package/dist/style.css +1 -1
  19. package/eslint.config.js +39 -15
  20. package/package.json +11 -5
  21. package/public/index.html +9 -6
  22. package/src/App.vue +234 -249
  23. package/src/assets/_variables.scss +12 -10
  24. package/src/assets/header-icon.scss +8 -9
  25. package/src/assets/mapicon-species-style.css +10 -8
  26. package/src/assets/styles.scss +1 -1
  27. package/src/components/ContentBar.vue +98 -106
  28. package/src/components/ContentVuer.vue +36 -39
  29. package/src/components/ContextCard.vue +238 -199
  30. package/src/components/ContextHelp.vue +22 -26
  31. package/src/components/CustomSplitter.vue +32 -43
  32. package/src/components/DatasetHeader.vue +37 -41
  33. package/src/components/DialogToolbarContent.vue +292 -256
  34. package/src/components/FlatmapContextCard.vue +52 -57
  35. package/src/components/MapContent.vue +90 -86
  36. package/src/components/ResizeSensor.vue +8 -13
  37. package/src/components/SearchControls.vue +26 -35
  38. package/src/components/SimulatedData.js +196 -219
  39. package/src/components/SplitDialog.vue +139 -129
  40. package/src/components/SplitFlow.vue +421 -237
  41. package/src/components/index.js +1 -3
  42. package/src/components/scripts/simulation_data.js +393 -397
  43. package/src/components/scripts/utilities.js +108 -78
  44. package/src/components/viewers/CellDLViewer.vue +9 -9
  45. package/src/components/viewers/ConnectivityGraph.vue +9 -12
  46. package/src/components/viewers/Flatmap.vue +23 -25
  47. package/src/components/viewers/Iframe.vue +8 -10
  48. package/src/components/viewers/MultiFlatmap.vue +59 -69
  49. package/src/components/viewers/Plot.vue +6 -7
  50. package/src/components/viewers/Scaffold.vue +73 -63
  51. package/src/components/viewers/Simulation.vue +10 -15
  52. package/src/main.js +16 -21
  53. package/src/mixins/ContentMixin.js +208 -178
  54. package/src/mixins/DynamicMarkerMixin.js +14 -18
  55. package/src/mixins/RetrieveContextCardMixin.js +35 -30
  56. package/src/mixins/S3Bucket.vue +10 -13
  57. package/src/services/knowledgeMapping.js +53 -53
  58. package/src/services/tagging.js +4 -4
  59. package/src/stores/connectivities.js +46 -8
  60. package/src/stores/entries.js +7 -9
  61. package/src/stores/index.js +7 -7
  62. package/src/stores/settings.js +23 -31
  63. package/src/stores/splitFlow.js +364 -298
  64. package/vite.bundle-build.js +24 -26
  65. package/vite.config.js +22 -21
  66. package/vite.static-build.js +4 -4
  67. package/vitest.workspace.js +1 -3
  68. package/vuese-generator.js +47 -55
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- t && t.esearchresult && (e.id = (t.esearchresult.idlist || [])[0], e.type = "pmid");
33965
+ t && t.esearchresult && (e.id = (t.esearchresult.idlist || [])[0], e.type = "pmid", this.generateCitationText(e, this.citationType));
33967
33966
  });
33968
33967
  }
33969
33968
  }), this.formatNonPubMedReferences(t).then((e) => {
@@ -33980,28 +33979,37 @@ var HH = /*#__PURE__*/ Zv(zH, [["render", VH], ["__scopeId", "data-v-50dbc534"]]
33980
33979
  }), t;
33981
33980
  },
33982
33981
  formatNonPubMedReferences: async function(e) {
33983
- let t = [], n = e.filter((e) => e.indexOf("isbn") !== -1), r = n.map((e) => "ISBN:" + e.split("/").pop()), i = r.join(","), a = r.slice(), o = (e) => n.find((t) => t.includes(e)), s = `https://openlibrary.org/api/books?bibkeys=${i}&format=json`, c = await this.fetchData(s);
33984
- for (let e in c) {
33985
- let n = a.indexOf(e);
33986
- a.splice(n, 1);
33987
- let r = c[e].info_url, i = r.split("/"), s = i[i.indexOf("books") + 1], l = e.split(":")[1], u = o(l);
33988
- t.push({
33989
- id: l,
33990
- type: "openlib",
33991
- url: r,
33992
- bookId: s,
33993
- resource: u
33994
- });
33995
- }
33996
- return a.forEach((e) => {
33997
- let n = e.split(":")[1], r = `https://isbndb.com/book/${n}`, i = o(n);
33998
- t.push({
33999
- id: n,
34000
- url: r,
34001
- type: "isbndb",
34002
- resource: i
34003
- });
34004
- }), t;
33982
+ let t = [], n = e.filter((e) => e.indexOf("isbn") !== -1), r = n.map((e) => e.split("/").pop()), i = (e) => n.find((t) => t.includes(e));
33983
+ return await Promise.all(r.map(async (e) => {
33984
+ let n = i(e);
33985
+ try {
33986
+ let { url: r, bookId: i } = await this.getBookInfoByISBN(e);
33987
+ t.push({
33988
+ id: e,
33989
+ type: "openlib",
33990
+ url: r,
33991
+ bookId: i,
33992
+ resource: n
33993
+ });
33994
+ } catch {
33995
+ let r = `https://isbndb.com/book/${e}`;
33996
+ t.push({
33997
+ id: e,
33998
+ url: r,
33999
+ type: "isbndb",
34000
+ resource: n
34001
+ });
34002
+ }
34003
+ })), t;
34004
+ },
34005
+ getBookInfoByISBN: async function(e) {
34006
+ let t = `https://openlibrary.org/isbn/${e}.json`, n = await fetch(t);
34007
+ if (!n.ok) throw Error(`Response status: ${n.status}`);
34008
+ let r = n.url.split("/"), i = r[r.indexOf("books") + 1].replace(/\.json$/, "");
34009
+ return {
34010
+ url: `https://openlibrary.org/books/${i}`,
34011
+ bookId: i
34012
+ };
34005
34013
  },
34006
34014
  extractPublicationIdFromURLString: function(e) {
34007
34015
  if (!e) return;
@@ -34038,7 +34046,7 @@ var HH = /*#__PURE__*/ Zv(zH, [["render", VH], ["__scopeId", "data-v-50dbc534"]]
34038
34046
  this.getCitationTextByDOI(a).then((n) => {
34039
34047
  let r = this.replaceLinkInText(n);
34040
34048
  e.citation[t] = r, this.updateCopyContents();
34041
- }).catch((n) => {
34049
+ }).catch(() => {
34042
34050
  e.citation.error = {
34043
34051
  type: t,
34044
34052
  ref: "doi"
@@ -34050,7 +34058,7 @@ var HH = /*#__PURE__*/ Zv(zH, [["render", VH], ["__scopeId", "data-v-50dbc534"]]
34050
34058
  if (a) e.doi = a, this.getCitationTextByDOI(a).then((n) => {
34051
34059
  let r = this.replaceLinkInText(n);
34052
34060
  e.citation[t] = r, this.updateCopyContents();
34053
- }).catch((n) => {
34061
+ }).catch(() => {
34054
34062
  e.citation.error = {
34055
34063
  type: t,
34056
34064
  ref: "doi"
@@ -34066,7 +34074,7 @@ var HH = /*#__PURE__*/ Zv(zH, [["render", VH], ["__scopeId", "data-v-50dbc534"]]
34066
34074
  e.citation[t] = c, this.updateCopyContents();
34067
34075
  }
34068
34076
  }
34069
- }).catch((n) => {
34077
+ }).catch(() => {
34070
34078
  e.citation.error = {
34071
34079
  type: t,
34072
34080
  ref: "pubmed"
@@ -34159,11 +34167,11 @@ var HH = /*#__PURE__*/ Zv(zH, [["render", VH], ["__scopeId", "data-v-50dbc534"]]
34159
34167
  if (!n.ok) throw Error(`Response status: ${n.status}`);
34160
34168
  return t === "text" ? await n.text() : await n.json();
34161
34169
  } catch (e) {
34162
- throw Error(e);
34170
+ throw Error(e, { cause: e });
34163
34171
  }
34164
34172
  },
34165
34173
  onCopied: function(e, t) {
34166
- let n = "Reference List", r = "", i = this.citationType;
34174
+ let n, r = "", i = this.citationType;
34167
34175
  t ? (n = t.resource, r = t.type === "doi" ? t.id : "") : n = [
34168
34176
  ...this.pubMedReferences,
34169
34177
  ...this.openLibReferences,
@@ -34211,14 +34219,14 @@ function iU(e, n, r, i, a, o) {
34211
34219
  }, [r.citation ? (I(), u(t, { key: 0 }, [r.citation.error?.ref === "doi" && r.citation.error?.type === e.citationType ? (I(), u(t, { key: 0 }, [
34212
34220
  n[2] ||= d("span", null, "Internal Server Error", -1),
34213
34221
  n[3] ||= d("br", null, null, -1),
34214
- n[4] ||= m(" Sorry, something went wrong.", -1),
34222
+ n[4] ||= m(" Sorry, something went wrong. ", -1),
34215
34223
  n[5] ||= d("br", null, null, -1),
34216
- n[6] ||= m(" The dataset citation generator (", -1),
34224
+ n[6] ||= m(" The dataset citation generator ( ", -1),
34217
34225
  d("a", {
34218
34226
  href: e.crosscite_host,
34219
34227
  target: "_blank"
34220
34228
  }, K(e.crosscite_host), 9, $H),
34221
- n[7] ||= m(") encountered an internal error and was unable to complete your request.", -1),
34229
+ n[7] ||= m(" ) encountered an internal error and was unable to complete your request. ", -1),
34222
34230
  n[8] ||= d("br", null, null, -1),
34223
34231
  n[9] ||= m(" Please come back later. ", -1)
34224
34232
  ], 64)) : r.citation.error?.ref === "pubmed" && r.citation.error?.type === e.citationType ? (I(), u(t, { key: 1 }, [
@@ -34268,7 +34276,7 @@ function iU(e, n, r, i, a, o) {
34268
34276
  ])
34269
34277
  ]);
34270
34278
  }
34271
- var aU = /*#__PURE__*/ Zv(qH, [["render", iU], ["__scopeId", "data-v-4e57d58e"]]);
34279
+ var aU = /*#__PURE__*/ Zv(qH, [["render", iU], ["__scopeId", "data-v-494d893f"]]);
34272
34280
  function oU(e) {
34273
34281
  return {
34274
34282
  all: e ||= /* @__PURE__ */ new Map(),
@@ -34629,7 +34637,7 @@ async function wU(e, t, n, r) {
34629
34637
  "destination",
34630
34638
  "all"
34631
34639
  ]) {
34632
- let t = [];
34640
+ let t;
34633
34641
  if (e === "origin") t = l.map((t) => f(e, t));
34634
34642
  else if (e === "via") t = u.map((t) => f(e, t));
34635
34643
  else if (e === "destination") t = d.map((t) => f(e, t));
@@ -34834,7 +34842,7 @@ var EU = new TU(), DU = { sendEvent: function(e) {
34834
34842
  }
34835
34843
  });
34836
34844
  for (let [e, n] of Object.entries(this.facets)) {
34837
- let r = 0;
34845
+ let r;
34838
34846
  for (r = n.length - 1; r >= 0; --r) t[e].indexOf(n[r]) == -1 && n.splice(r, 1);
34839
34847
  }
34840
34848
  }
@@ -35678,7 +35686,24 @@ var QU = (e) => {
35678
35686
  EU.emit("species-layout-connectivity-update");
35679
35687
  }
35680
35688
  }
35681
- }), aW = _e("connectivities", {
35689
+ });
35690
+ //#endregion
35691
+ //#region src/stores/connectivities.js
35692
+ function aW(e = [], t = []) {
35693
+ let n = /* @__PURE__ */ new Map();
35694
+ return [...e, ...t].forEach((e) => {
35695
+ if (!e || e.id === void 0) return;
35696
+ let t = n.get(e.id);
35697
+ n.set(e.id, t ? {
35698
+ ...t,
35699
+ ...e,
35700
+ "nerve-label": e["nerve-label"] || t["nerve-label"],
35701
+ "long-label": e["long-label"] || t["long-label"],
35702
+ "expert-consultants": e["expert-consultants"] || t["expert-consultants"]
35703
+ } : { ...e });
35704
+ }), Array.from(n.values());
35705
+ }
35706
+ var oW = _e("connectivities", {
35682
35707
  state: () => ({
35683
35708
  activeConnectivityKeys: [],
35684
35709
  globalConnectivities: {},
@@ -35729,7 +35754,13 @@ var QU = (e) => {
35729
35754
  return BU(this.activeConnectivityKeys, e) ? this.connectivitiesUpdated ? (this.connectivitiesUpdated = !e.every((e) => e in this.globalConnectivities), !0) : !1 : (this.activeConnectivityKeys = e, !0);
35730
35755
  },
35731
35756
  updateGlobalConnectivities(e) {
35732
- e && JSON.stringify(e) !== JSON.stringify(this.globalConnectivities) && (this.globalConnectivities = e, this.connectivitiesUpdated = !0);
35757
+ if (e) {
35758
+ let t = { ...this.globalConnectivities };
35759
+ Object.entries(e).forEach(([e, n]) => {
35760
+ let r = t[e] || [];
35761
+ t[e] = aW(r, n || []);
35762
+ }), JSON.stringify(t) !== JSON.stringify(this.globalConnectivities) && (this.globalConnectivities = t, this.connectivitiesUpdated = !0);
35763
+ }
35733
35764
  },
35734
35765
  updateFilterOptions(e) {
35735
35766
  this.filterOptions = e;
@@ -35740,4 +35771,4 @@ var QU = (e) => {
35740
35771
  }
35741
35772
  });
35742
35773
  //#endregion
35743
- export { He as $, uU as A, De as B, RH as C, ry as D, fU as E, be as F, je as G, Oe as H, xe as I, Pe as J, Me as K, Se as L, hy as M, SV as N, wU as O, ye as P, Be as Q, we as R, qV as S, aV as T, ke as U, Ee as V, Ae as W, Re as X, Le as Y, ze as Z, kU as _, HU as a, Xe as at, EU as b, FU as c, IU as d, Ue as et, RU as f, zU as g, NU as h, UU as i, Je as it, xy as j, aU as k, PU as l, jU as m, iW as n, Ge as nt, VU as o, Ye as ot, MU as p, Ne as q, YU as r, qe as rt, GU as s, aW as t, We as tt, AU as u, OU as v, cU as w, pU as x, DU as y, Te as z };
35774
+ export { He as $, uU as A, De as B, RH as C, ry as D, fU as E, be as F, je as G, Oe as H, xe as I, Pe as J, Me as K, Se as L, hy as M, SV as N, wU as O, ye as P, Be as Q, we as R, qV as S, aV as T, ke as U, Ee as V, Ae as W, Re as X, Le as Y, ze as Z, kU as _, HU as a, Xe as at, EU as b, FU as c, IU as d, Ue as et, RU as f, zU as g, NU as h, UU as i, Je as it, xy as j, aU as k, PU as l, jU as m, iW as n, Ge as nt, VU as o, Ye as ot, MU as p, Ne as q, YU as r, qe as rt, GU as s, oW as t, We as tt, AU as u, OU as v, cU as w, pU as x, DU as y, Te as z };